Gvermi12922.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12922.t1
Unique NameGvermi12922.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length434
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:2096427..2097728 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D8LMF4
PFAMsCBM_1,LPMO_10
Max annot lvl2759|Eukaryota
Evalue7.07e-15
EggNOG OGs2CZUJ@1|root,2SBQR@2759|Eukaryota
DescriptionFungal-type cellulose-binding domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12922Gvermi12922Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 2096427..2097728 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12922.t1.start1Gvermi12922.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 2096427..2096429 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12922.t1.CDS1Gvermi12922.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 2096427..2097728 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12922.t1.exon1Gvermi12922.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 2096427..2097728 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12922.t1.stop1Gvermi12922.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 2097726..2097728 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12922.t1Gvermi12922.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 2096427..2097728 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12922.t1 ID=Gvermi12922.t1|Name=Gvermi12922.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=434bp
MTEPPQRGILGGNQFAPRLQPVSGAPVDFFAHFPAGDKSTRPGAGKASQE
RAAGRNWTPYTPLDAAFVWRAGVCGDAAGAAQDHLKGGTLYFGGRVTRSY
RQGAVLRMTNAITAHHNGFVEAHLCDVSKCPGGDVSTRCFAHTSACVALR
RAADAECDGGRSPACGPVQRTHPGRWYLPCASGARFDEFSMTWQLPEHVF
CDHCVLQWYWVSANTCNPPGVRDYFTGPDAPRAWGSCRGQGGAVGGFAAN
QRDCGADRFPEEYYQCADIRIERAGAAPAAPAAPSADDHQAVAAQSDDAD
AVAAQSAPDRDDDDDDDDVAAPPESRFLHIAVIADGRVVSEVLSGDDKAV
DISPYRRVALEAVTSRRVRRVTFAINGRRVWTERSRPYFLFGNHGREPNY
WPDPLINEEFQLSASAGADIIDVRITLIRADGR*
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spliced messenger RNA

>Gvermi12922.t1 ID=Gvermi12922.t1|Name=Gvermi12922.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1302bp|location=Sequence derived from alignment at ScGOVlb_425:2096427..2097728+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGAGCCGCCGCAGCGCGGCATCCTGGGCGGCAACCAGTTCGCGCC
GCGGCTGCAGCCCGTGTCCGGCGCGCCCGTGGACTTCTTCGCGCACTTCC
CGGCCGGCGACAAGAGCACGCGGCCGGGCGCCGGCAAGGCGTCGCAGGAG
CGCGCGGCCGGGCGCAACTGGACGCCGTACACGCCGCTGGACGCGGCGTT
CGTGTGGCGCGCCGGCGTGTGCGGCGACGCGGCCGGCGCGGCGCAGGACC
ACCTCAAGGGCGGCACGCTGTACTTCGGCGGCCGCGTCACGCGCTCGTAC
CGCCAGGGCGCCGTGCTGCGCATGACCAACGCCATCACGGCGCACCACAA
CGGCTTCGTGGAGGCGCACCTCTGCGACGTGTCCAAGTGTCCGGGGGGCG
ACGTGTCCACGCGCTGCTTCGCGCACACGTCGGCGTGCGTGGCGCTGCGC
CGCGCCGCCGACGCCGAGTGCGACGGGGGGCGGTCGCCCGCGTGCGGCCC
GGTGCAGCGCACGCACCCGGGGCGCTGGTACCTGCCGTGCGCCTCGGGCG
CGCGCTTCGACGAGTTCTCCATGACGTGGCAGCTGCCGGAGCACGTGTTC
TGCGACCACTGCGTGCTGCAGTGGTACTGGGTGTCGGCCAACACGTGCAA
CCCGCCCGGCGTGCGCGACTACTTCACCGGCCCCGACGCCCCGCGCGCCT
GGGGCTCGTGCCGCGGCCAGGGCGGCGCCGTCGGCGGCTTCGCCGCCAAC
CAGCGCGACTGCGGCGCCGACCGCTTCCCCGAGGAGTACTACCAGTGCGC
CGACATCCGCATCGAGCGcgctggcgccgcccccgccgcccccgccgccc
cctccgccgacgaccaccaggccgtcgccgcccaatccgacgacgccgac
gccgtcgccgcccaatccgcccccgaccgcgacgacgacgacgacgacga
cgacgTCGCCGCCCCGCCCGAGTCGCGCTTCCTGCACATCGCCGTCATCG
CCGACGGCCGCGTCGTGTCCGAGGTGCTGTCCGGCGACGACAAGGCCGTC
GACATCAGCCCGTACcgccgcgtcgcgctggaggccgtcacgtcgcgccg
cgtgcgccgcgtcACCTTCGCCATCAACGGCCGCCGCGTGTGGACCGAGC
GCTCACGCCCCTACTTTCTCTTCGGCAACCACGGCCGCGAGCCCAACTAC
TGGCCCGACCCGCTCATCAACGAGGAGTTCCAGCTGTCCgcctccgcggg
tgccgacatcatcgacgtgcgcatcaccctcattcgcgccgacggccgct
ga
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protein sequence of Gvermi12922.t1

>Gvermi12922.t1 ID=Gvermi12922.t1|Name=Gvermi12922.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=434bp
MTEPPQRGILGGNQFAPRLQPVSGAPVDFFAHFPAGDKSTRPGAGKASQE
RAAGRNWTPYTPLDAAFVWRAGVCGDAAGAAQDHLKGGTLYFGGRVTRSY
RQGAVLRMTNAITAHHNGFVEAHLCDVSKCPGGDVSTRCFAHTSACVALR
RAADAECDGGRSPACGPVQRTHPGRWYLPCASGARFDEFSMTWQLPEHVF
CDHCVLQWYWVSANTCNPPGVRDYFTGPDAPRAWGSCRGQGGAVGGFAAN
QRDCGADRFPEEYYQCADIRIERAGAAPAAPAAPSADDHQAVAAQSDDAD
AVAAQSAPDRDDDDDDDDVAAPPESRFLHIAVIADGRVVSEVLSGDDKAV
DISPYRRVALEAVTSRRVRRVTFAINGRRVWTERSRPYFLFGNHGREPNY
WPDPLINEEFQLSASAGADIIDVRITLIRADGR*
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mRNA from alignment at ScGOVlb_425:2096427..2097728+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12922.t1 ID=Gvermi12922.t1|Name=Gvermi12922.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1302bp|location=Sequence derived from alignment at ScGOVlb_425:2096427..2097728+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACGGAGCCGCCGCAGCGCGGCATCCTGGGCGGCAACCAGTTCGCGCC
GCGGCTGCAGCCCGTGTCCGGCGCGCCCGTGGACTTCTTCGCGCACTTCC
CGGCCGGCGACAAGAGCACGCGGCCGGGCGCCGGCAAGGCGTCGCAGGAG
CGCGCGGCCGGGCGCAACTGGACGCCGTACACGCCGCTGGACGCGGCGTT
CGTGTGGCGCGCCGGCGTGTGCGGCGACGCGGCCGGCGCGGCGCAGGACC
ACCTCAAGGGCGGCACGCTGTACTTCGGCGGCCGCGTCACGCGCTCGTAC
CGCCAGGGCGCCGTGCTGCGCATGACCAACGCCATCACGGCGCACCACAA
CGGCTTCGTGGAGGCGCACCTCTGCGACGTGTCCAAGTGTCCGGGGGGCG
ACGTGTCCACGCGCTGCTTCGCGCACACGTCGGCGTGCGTGGCGCTGCGC
CGCGCCGCCGACGCCGAGTGCGACGGGGGGCGGTCGCCCGCGTGCGGCCC
GGTGCAGCGCACGCACCCGGGGCGCTGGTACCTGCCGTGCGCCTCGGGCG
CGCGCTTCGACGAGTTCTCCATGACGTGGCAGCTGCCGGAGCACGTGTTC
TGCGACCACTGCGTGCTGCAGTGGTACTGGGTGTCGGCCAACACGTGCAA
CCCGCCCGGCGTGCGCGACTACTTCACCGGCCCCGACGCCCCGCGCGCCT
GGGGCTCGTGCCGCGGCCAGGGCGGCGCCGTCGGCGGCTTCGCCGCCAAC
CAGCGCGACTGCGGCGCCGACCGCTTCCCCGAGGAGTACTACCAGTGCGC
CGACATCCGCATCGAGCGcgctggcgccgcccccgccgcccccgccgccc
cctccgccgacgaccaccaggccgtcgccgcccaatccgacgacgccgac
gccgtcgccgcccaatccgcccccgaccgcgacgacgacgacgacgacga
cgacgTCGCCGCCCCGCCCGAGTCGCGCTTCCTGCACATCGCCGTCATCG
CCGACGGCCGCGTCGTGTCCGAGGTGCTGTCCGGCGACGACAAGGCCGTC
GACATCAGCCCGTACcgccgcgtcgcgctggaggccgtcacgtcgcgccg
cgtgcgccgcgtcACCTTCGCCATCAACGGCCGCCGCGTGTGGACCGAGC
GCTCACGCCCCTACTTTCTCTTCGGCAACCACGGCCGCGAGCCCAACTAC
TGGCCCGACCCGCTCATCAACGAGGAGTTCCAGCTGTCCgcctccgcggg
tgccgacatcatcgacgtgcgcatcaccctcattcgcgccgacggccgct
ga
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Coding sequence (CDS) from alignment at ScGOVlb_425:2096427..2097728+

>Gvermi12922.t1 ID=Gvermi12922.t1|Name=Gvermi12922.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1302bp|location=Sequence derived from alignment at ScGOVlb_425:2096427..2097728+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACGGAGCCGCCGCAGCGCGGCATCCTGGGCGGCAACCAGTTCGCGCC
GCGGCTGCAGCCCGTGTCCGGCGCGCCCGTGGACTTCTTCGCGCACTTCC
CGGCCGGCGACAAGAGCACGCGGCCGGGCGCCGGCAAGGCGTCGCAGGAG
CGCGCGGCCGGGCGCAACTGGACGCCGTACACGCCGCTGGACGCGGCGTT
CGTGTGGCGCGCCGGCGTGTGCGGCGACGCGGCCGGCGCGGCGCAGGACC
ACCTCAAGGGCGGCACGCTGTACTTCGGCGGCCGCGTCACGCGCTCGTAC
CGCCAGGGCGCCGTGCTGCGCATGACCAACGCCATCACGGCGCACCACAA
CGGCTTCGTGGAGGCGCACCTCTGCGACGTGTCCAAGTGTCCGGGGGGCG
ACGTGTCCACGCGCTGCTTCGCGCACACGTCGGCGTGCGTGGCGCTGCGC
CGCGCCGCCGACGCCGAGTGCGACGGGGGGCGGTCGCCCGCGTGCGGCCC
GGTGCAGCGCACGCACCCGGGGCGCTGGTACCTGCCGTGCGCCTCGGGCG
CGCGCTTCGACGAGTTCTCCATGACGTGGCAGCTGCCGGAGCACGTGTTC
TGCGACCACTGCGTGCTGCAGTGGTACTGGGTGTCGGCCAACACGTGCAA
CCCGCCCGGCGTGCGCGACTACTTCACCGGCCCCGACGCCCCGCGCGCCT
GGGGCTCGTGCCGCGGCCAGGGCGGCGCCGTCGGCGGCTTCGCCGCCAAC
CAGCGCGACTGCGGCGCCGACCGCTTCCCCGAGGAGTACTACCAGTGCGC
CGACATCCGCATCGAGCGcgctggcgccgcccccgccgcccccgccgccc
cctccgccgacgaccaccaggccgtcgccgcccaatccgacgacgccgac
gccgtcgccgcccaatccgcccccgaccgcgacgacgacgacgacgacga
cgacgTCGCCGCCCCGCCCGAGTCGCGCTTCCTGCACATCGCCGTCATCG
CCGACGGCCGCGTCGTGTCCGAGGTGCTGTCCGGCGACGACAAGGCCGTC
GACATCAGCCCGTACcgccgcgtcgcgctggaggccgtcacgtcgcgccg
cgtgcgccgcgtcACCTTCGCCATCAACGGCCGCCGCGTGTGGACCGAGC
GCTCACGCCCCTACTTTCTCTTCGGCAACCACGGCCGCGAGCCCAACTAC
TGGCCCGACCCGCTCATCAACGAGGAGTTCCAGCTGTCCgcctccgcggg
tgccgacatcatcgacgtgcgcatcaccctcattcgcgccgacggccgct
ga
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