Gvermi12917.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12917.t1
Unique NameGvermi12917.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length192
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:2079799..2080374 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog883078.HMPREF9695_02747
Preferred namemsrB1
PFAMsSelR
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K07305
Evalue2.55e-54
EggNOG OGsCOG0229@1|root,COG0229@2|Bacteria,1RGWC@1224|Proteobacteria,2U70T@28211|Alphaproteobacteria,3JSXE@41294|Bradyrhizobiaceae
EC1.8.4.12
Descriptionmethionine sulfoxide reductase
COG categoryO
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12917Gvermi12917Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 2079799..2080374 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12917.t1.start1Gvermi12917.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 2079799..2079801 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12917.t1.CDS1Gvermi12917.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 2079799..2080374 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12917.t1.exon1Gvermi12917.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 2079799..2080374 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12917.t1.stop1Gvermi12917.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 2080372..2080374 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12917.t1Gvermi12917.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 2079799..2080374 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12917.t1 ID=Gvermi12917.t1|Name=Gvermi12917.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=192bp
MHLTAFSLPSLIRTRKASEPPHSHSHSNPKYRTIASLPRFTRRDAIPLLL
ASLVVVPPVLAEPRDLPRTEQQWRAALTPEQFFVLRESGTERPFSSPLNA
EKRSGTFCCAGCGTPVFDSAAKFESGTGWPSFSLALDGVRVRQSLPDRIL
LRKEVSCTRCGGHLGHVFEDGPRPTGLRYCINGVALSFSPA*
back to top

spliced messenger RNA

>Gvermi12917.t1 ID=Gvermi12917.t1|Name=Gvermi12917.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=576bp|location=Sequence derived from alignment at ScGOVlb_425:2079799..2080374+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATCTCACCGCCTTCAGCCTACCATCGCTCATTCGCACGCGCAAAGC
GTCCGAGCCGCCGCATTCGCATTCGCATTCGAATCCAAAGTACCGCACCA
TCGCCTCGTTGCCGCGCTTTACCCGCCGGGATGCGATCCCACTGCTGCTC
GCCTCGCTCGTGGTCGTCCCTCCCGTGCTAGCCGAACCGCGCGACCTCCC
TCGCACCGAGCAGCAATGGCGCGCCGCACTCACACCCGAGCAGTTCTTCG
TGCTCCGTGAGAGCGGCACTGAGCGCCCGTTCTCTTCCCCGCTCAACGCC
GAGAAGCGCAGCGGTACATTTTGTTGCGCCGGCTGCGGCACGCCGGTGTT
TGACTCCGCGGCCAAGTTCGAGTCCGGCACGGGATGGCCATCCTTCAGCC
TCGCTTTGGATGGGGTTCGCGTGAGGCAGAGCCTTCCCGACCGCATCTTA
CTGAGAAAGGAAGTCTCTTGTACGAGGTGCGGCGGCCATTTGGGACACGT
TTTTGAAGATGGGCCGCGCCCCACCGGATTGCGCTACTGCATCAACGGGG
TCGCGCTCTCGTTTTCTCCGGCATGA
back to top

protein sequence of Gvermi12917.t1

>Gvermi12917.t1 ID=Gvermi12917.t1|Name=Gvermi12917.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=192bp
MHLTAFSLPSLIRTRKASEPPHSHSHSNPKYRTIASLPRFTRRDAIPLLL
ASLVVVPPVLAEPRDLPRTEQQWRAALTPEQFFVLRESGTERPFSSPLNA
EKRSGTFCCAGCGTPVFDSAAKFESGTGWPSFSLALDGVRVRQSLPDRIL
LRKEVSCTRCGGHLGHVFEDGPRPTGLRYCINGVALSFSPA*
back to top

mRNA from alignment at ScGOVlb_425:2079799..2080374+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12917.t1 ID=Gvermi12917.t1|Name=Gvermi12917.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=576bp|location=Sequence derived from alignment at ScGOVlb_425:2079799..2080374+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCATCTCACCGCCTTCAGCCTACCATCGCTCATTCGCACGCGCAAAGC
GTCCGAGCCGCCGCATTCGCATTCGCATTCGAATCCAAAGTACCGCACCA
TCGCCTCGTTGCCGCGCTTTACCCGCCGGGATGCGATCCCACTGCTGCTC
GCCTCGCTCGTGGTCGTCCCTCCCGTGCTAGCCGAACCGCGCGACCTCCC
TCGCACCGAGCAGCAATGGCGCGCCGCACTCACACCCGAGCAGTTCTTCG
TGCTCCGTGAGAGCGGCACTGAGCGCCCGTTCTCTTCCCCGCTCAACGCC
GAGAAGCGCAGCGGTACATTTTGTTGCGCCGGCTGCGGCACGCCGGTGTT
TGACTCCGCGGCCAAGTTCGAGTCCGGCACGGGATGGCCATCCTTCAGCC
TCGCTTTGGATGGGGTTCGCGTGAGGCAGAGCCTTCCCGACCGCATCTTA
CTGAGAAAGGAAGTCTCTTGTACGAGGTGCGGCGGCCATTTGGGACACGT
TTTTGAAGATGGGCCGCGCCCCACCGGATTGCGCTACTGCATCAACGGGG
TCGCGCTCTCGTTTTCTCCGGCATGA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_425:2079799..2080374+

>Gvermi12917.t1 ID=Gvermi12917.t1|Name=Gvermi12917.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=576bp|location=Sequence derived from alignment at ScGOVlb_425:2079799..2080374+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCATCTCACCGCCTTCAGCCTACCATCGCTCATTCGCACGCGCAAAGC
GTCCGAGCCGCCGCATTCGCATTCGCATTCGAATCCAAAGTACCGCACCA
TCGCCTCGTTGCCGCGCTTTACCCGCCGGGATGCGATCCCACTGCTGCTC
GCCTCGCTCGTGGTCGTCCCTCCCGTGCTAGCCGAACCGCGCGACCTCCC
TCGCACCGAGCAGCAATGGCGCGCCGCACTCACACCCGAGCAGTTCTTCG
TGCTCCGTGAGAGCGGCACTGAGCGCCCGTTCTCTTCCCCGCTCAACGCC
GAGAAGCGCAGCGGTACATTTTGTTGCGCCGGCTGCGGCACGCCGGTGTT
TGACTCCGCGGCCAAGTTCGAGTCCGGCACGGGATGGCCATCCTTCAGCC
TCGCTTTGGATGGGGTTCGCGTGAGGCAGAGCCTTCCCGACCGCATCTTA
CTGAGAAAGGAAGTCTCTTGTACGAGGTGCGGCGGCCATTTGGGACACGT
TTTTGAAGATGGGCCGCGCCCCACCGGATTGCGCTACTGCATCAACGGGG
TCGCGCTCTCGTTTTCTCCGGCATGA
back to top