Gvermi12916.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12916.t1
Unique NameGvermi12916.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length159
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:2075072..2075548 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1227349.C170_29653
PFAMsHSP20
Max annot lvl91061|Bacilli
KEGG koko:K13993
KEGG Pathwayko04141,map04141
Evalue2.98e-08
EggNOG OGsCOG0071@1|root,COG0071@2|Bacteria,1VG0E@1239|Firmicutes,4HPDH@91061|Bacilli,26XIX@186822|Paenibacillaceae
DescriptionBelongs to the small heat shock protein (HSP20) family
COG categoryO
BRITEko00000,ko00001,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12916Gvermi12916Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 2075072..2075548 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12916.t1.stop1Gvermi12916.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 2075072..2075074 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12916.t1.CDS1Gvermi12916.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 2075072..2075548 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12916.t1.exon1Gvermi12916.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 2075072..2075548 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12916.t1.start1Gvermi12916.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 2075546..2075548 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12916.t1Gvermi12916.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 2075072..2075548 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12916.t1 ID=Gvermi12916.t1|Name=Gvermi12916.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=159bp
MEPLFPFSFPNRELRRLRQLADQMENSFKASDGTHHHVPNYEYHREQDKI
HLEVELPGVQKEHVEVEMRGSNLCILGRRFKSSGLVVEEHKDDSAQNNDQ
DVQMDQGKNASVVYELQVKVGENVDEGKIKAEHKDGILKMMIPLKTESGA
RKIAITQG*
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spliced messenger RNA

>Gvermi12916.t1 ID=Gvermi12916.t1|Name=Gvermi12916.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=477bp|location=Sequence derived from alignment at ScGOVlb_425:2075072..2075548- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAACCGCTCTTCCCGTTTTCCTTCCCGAACCGTGAGTTGCGCAGGCT
CCGCCAACTTGCCGATCAAATGGAAAACAGTTTTAAGGCTTCAGACGGCA
CTCATCATCATGTTCCGAACTACGAATACCACCGAGAGCAGGACAAAATC
CACCTGGAGGTGGAGCTGCCGGGGGTGCAGAAGGAACACGTTGAGGTAGA
AATGCGTGGTTCAAACCTGTGCATTCTTGGCCGCCGTTTCAAGTCAAGTG
GACTCGTTGTCGAGGAGCATAAAGATGACTCTGCGCAGAATAATGATCAA
GACGTGCAGATGGACCAGGGAAAGAACGCCAGCGTTGTTTACGAATTGCA
GGTAAAGGTTGGCGAAAATGTTGATGAAGGTAAAATCAAGGCTGAGCATA
AGGATGGAATCTTGAAAATGATGATCCCGTTGAAGACTGAAAGTGGAGCT
CGTAAGATCGCTATCACGCAGGGATAG
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protein sequence of Gvermi12916.t1

>Gvermi12916.t1 ID=Gvermi12916.t1|Name=Gvermi12916.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=159bp
MEPLFPFSFPNRELRRLRQLADQMENSFKASDGTHHHVPNYEYHREQDKI
HLEVELPGVQKEHVEVEMRGSNLCILGRRFKSSGLVVEEHKDDSAQNNDQ
DVQMDQGKNASVVYELQVKVGENVDEGKIKAEHKDGILKMMIPLKTESGA
RKIAITQG*
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mRNA from alignment at ScGOVlb_425:2075072..2075548-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12916.t1 ID=Gvermi12916.t1|Name=Gvermi12916.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=477bp|location=Sequence derived from alignment at ScGOVlb_425:2075072..2075548- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAACCGCTCTTCCCGTTTTCCTTCCCGAACCGTGAGTTGCGCAGGCT
CCGCCAACTTGCCGATCAAATGGAAAACAGTTTTAAGGCTTCAGACGGCA
CTCATCATCATGTTCCGAACTACGAATACCACCGAGAGCAGGACAAAATC
CACCTGGAGGTGGAGCTGCCGGGGGTGCAGAAGGAACACGTTGAGGTAGA
AATGCGTGGTTCAAACCTGTGCATTCTTGGCCGCCGTTTCAAGTCAAGTG
GACTCGTTGTCGAGGAGCATAAAGATGACTCTGCGCAGAATAATGATCAA
GACGTGCAGATGGACCAGGGAAAGAACGCCAGCGTTGTTTACGAATTGCA
GGTAAAGGTTGGCGAAAATGTTGATGAAGGTAAAATCAAGGCTGAGCATA
AGGATGGAATCTTGAAAATGATGATCCCGTTGAAGACTGAAAGTGGAGCT
CGTAAGATCGCTATCACGCAGGGATAG
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Coding sequence (CDS) from alignment at ScGOVlb_425:2075072..2075548-

>Gvermi12916.t1 ID=Gvermi12916.t1|Name=Gvermi12916.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=477bp|location=Sequence derived from alignment at ScGOVlb_425:2075072..2075548- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAACCGCTCTTCCCGTTTTCCTTCCCGAACCGTGAGTTGCGCAGGCT
CCGCCAACTTGCCGATCAAATGGAAAACAGTTTTAAGGCTTCAGACGGCA
CTCATCATCATGTTCCGAACTACGAATACCACCGAGAGCAGGACAAAATC
CACCTGGAGGTGGAGCTGCCGGGGGTGCAGAAGGAACACGTTGAGGTAGA
AATGCGTGGTTCAAACCTGTGCATTCTTGGCCGCCGTTTCAAGTCAAGTG
GACTCGTTGTCGAGGAGCATAAAGATGACTCTGCGCAGAATAATGATCAA
GACGTGCAGATGGACCAGGGAAAGAACGCCAGCGTTGTTTACGAATTGCA
GGTAAAGGTTGGCGAAAATGTTGATGAAGGTAAAATCAAGGCTGAGCATA
AGGATGGAATCTTGAAAATGATGATCCCGTTGAAGACTGAAAGTGGAGCT
CGTAAGATCGCTATCACGCAGGGATAG
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