Gvermi12911.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12911.t1
Unique NameGvermi12911.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length413
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:2067665..2068903 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707147.1
Preferred nameHIS5
PFAMsAminotran_1_2
Max annot lvl2759|Eukaryota
KEGG rclassRC00006,RC00888,RC00945
KEGG koko:K00817,ko:K01814
KEGG ReactionR00694,R00734,R03243,R04640
KEGG Pathwayko00340,ko00350,ko00360,ko00400,ko00401,ko00960,ko01100,ko01110,ko01130,ko01230,map00340,map00350,map00360,map00400,map00401,map00960,map01100,map01110,map01130,map01230
KEGG ModuleM00026
GOsGO:0000105,GO:0003674,GO:0003824,GO:0004400,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0008652,GO:0009058,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0010035,GO:0010038,GO:0010045,GO:0016053,GO:0016740,GO:0016769,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046483,GO:0050896,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
Evalue6.8e-137
EggNOG OGsCOG0079@1|root,KOG0633@2759|Eukaryota
EC2.6.1.9,5.3.1.16
Descriptionhistidinol-phosphate transaminase activity
COG categoryE
BiGG ReactioniMM904.YIL116W,iND750.YIL116W
BRITEko00000,ko00001,ko00002,ko01000,ko01007
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12911Gvermi12911Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 2067665..2068903 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12911.t1.stop1Gvermi12911.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 2067665..2067667 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12911.t1.CDS1Gvermi12911.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 2067665..2068903 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12911.t1.exon1Gvermi12911.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 2067665..2068903 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12911.t1.start1Gvermi12911.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 2068901..2068903 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12911.t1Gvermi12911.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 2067665..2068903 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12911.t1 ID=Gvermi12911.t1|Name=Gvermi12911.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=413bp
MTSFAPAFQICLPLLPFEKRSFSATKHSVSPRFSPSAIMNPTKTFSPEDS
IRPALREISPYTPILPYEVLAEKLGRHPSDIVKLDANENPFGPAPSVAPA
LAGAKHLHIYPDPESSFLRDAISEYTRVPKEYIMAGAGADELIDLLFRLF
VTPGTQDSIINCPPTFGMYKFDADVNGARIVNVPRNSAFEVDVSAIERVF
DEEPSPPKLLFVASPNNPDGSVLSENCVKRLLALPTVVVIDEAYFEFSNM
NIFSWVPSHENLVVLRTFSKWAALAGMRVGYGAFPLSIIKHMWKIKQPYN
VSVAGQIAAIASIKEKSDLLQKVDRLVKQRHIFYDRIAKYEWLHPFPSQS
NYVLCRVDSNRDAAQIKQQLADRGILIRYYTTPGLTDCIRVSMGTEQQME
AMYSALDELDQL*
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spliced messenger RNA

>Gvermi12911.t1 ID=Gvermi12911.t1|Name=Gvermi12911.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1239bp|location=Sequence derived from alignment at ScGOVlb_425:2067665..2068903- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCTCATTCGCCCCAGCTTTCCAGATATGTCTTCCTCTGCTACCTTT
CGAGAAACGCTCCTTTTCGGCAACCAAGCATAGCGTGTCTCCGCGGTTCT
CCCCCTCCGCTATTATGAATCCAACCAAGACCTTTTCGCCGGAAGATTCC
ATACGACCCGCGTTGCGTGAGATCTCCCCGTACACCCCTATTCTTCCATA
CGAGGTTCTGGCGGAGAAACTTGGCCGCCATCCCTCAGACATAGTCAAAC
TCGACGCTAACGAAAATCCTTTCGGCCCAGCTCCTTCCGTGGCCCCTGCG
CTTGCAGGTGCCAAACATCTGCATATTTATCCTGATCCCGAGTCCTCTTT
CCTGCGAGACGCCATATCGGAGTATACACGAGTGCCCAAAGAGTACATCA
TGGCTGGCGCTGGCGCTGATGAGCTTATTGACTTGCTGTTTCGCCTCTTT
GTCACCCCGGGCACGCAGGACAGTATCATCAACTGCCCGCCAACGTTTGG
TATGTACAAGTTTGATGCCGATGTGAATGGGGCGCGCATTGTCAACGTCC
CTCGCAACTCTGCTTTTGAGGTTGATGTGAGCGCTATCGAACGCGTATTC
GACGAAGAGCCCTCTCCTCCAAAACTTTTATTCGTTGCAAGTCCGAATAA
CCCAGACGGAAGCGTGCTGTCAGAAAATTGCGTCAAACGGCTTCTCGCGC
TCCCAACTGTTGTTGTGATAGACGAAGCATACTTTGAGTTTTCAAACATG
AACATTTTTTCATGGGTTCCCTCCCACGAAAATCTTGTCGTATTACGAAC
CTTTTCGAAGTGGGCGGCTCTAGCAGGTATGCGGGTTGGATACGGCGCTT
TTCCGCTTTCAATCATAAAGCATATGTGGAAGATTAAGCAGCCGTATAAC
GTATCTGTTGCCGGCCAGATTGCTGCCATAGCCTCTATCAAAGAAAAGAG
CGATTTGCTGCAAAAAGTTGATCGCCTGGTGAAACAACGTCACATCTTCT
ACGATAGAATTGCAAAGTATGAATGGTTACATCCGTTTCCTTCGCAATCG
AACTACGTTCTTTGTCGCGTGGATAGCAATCGTGATGCCGCACAAATTAA
GCAGCAATTGGCAGATCGCGGTATTTTGATCCGTTATTACACAACCCCTG
GCTTGACAGATTGTATACGAGTGTCCATGGGAACCGAACAACAAATGGAG
GCCATGTACTCCGCTCTGGATGAATTGGACCAGCTGTGA
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protein sequence of Gvermi12911.t1

>Gvermi12911.t1 ID=Gvermi12911.t1|Name=Gvermi12911.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=413bp
MTSFAPAFQICLPLLPFEKRSFSATKHSVSPRFSPSAIMNPTKTFSPEDS
IRPALREISPYTPILPYEVLAEKLGRHPSDIVKLDANENPFGPAPSVAPA
LAGAKHLHIYPDPESSFLRDAISEYTRVPKEYIMAGAGADELIDLLFRLF
VTPGTQDSIINCPPTFGMYKFDADVNGARIVNVPRNSAFEVDVSAIERVF
DEEPSPPKLLFVASPNNPDGSVLSENCVKRLLALPTVVVIDEAYFEFSNM
NIFSWVPSHENLVVLRTFSKWAALAGMRVGYGAFPLSIIKHMWKIKQPYN
VSVAGQIAAIASIKEKSDLLQKVDRLVKQRHIFYDRIAKYEWLHPFPSQS
NYVLCRVDSNRDAAQIKQQLADRGILIRYYTTPGLTDCIRVSMGTEQQME
AMYSALDELDQL*
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mRNA from alignment at ScGOVlb_425:2067665..2068903-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12911.t1 ID=Gvermi12911.t1|Name=Gvermi12911.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1239bp|location=Sequence derived from alignment at ScGOVlb_425:2067665..2068903- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACCTCATTCGCCCCAGCTTTCCAGATATGTCTTCCTCTGCTACCTTT
CGAGAAACGCTCCTTTTCGGCAACCAAGCATAGCGTGTCTCCGCGGTTCT
CCCCCTCCGCTATTATGAATCCAACCAAGACCTTTTCGCCGGAAGATTCC
ATACGACCCGCGTTGCGTGAGATCTCCCCGTACACCCCTATTCTTCCATA
CGAGGTTCTGGCGGAGAAACTTGGCCGCCATCCCTCAGACATAGTCAAAC
TCGACGCTAACGAAAATCCTTTCGGCCCAGCTCCTTCCGTGGCCCCTGCG
CTTGCAGGTGCCAAACATCTGCATATTTATCCTGATCCCGAGTCCTCTTT
CCTGCGAGACGCCATATCGGAGTATACACGAGTGCCCAAAGAGTACATCA
TGGCTGGCGCTGGCGCTGATGAGCTTATTGACTTGCTGTTTCGCCTCTTT
GTCACCCCGGGCACGCAGGACAGTATCATCAACTGCCCGCCAACGTTTGG
TATGTACAAGTTTGATGCCGATGTGAATGGGGCGCGCATTGTCAACGTCC
CTCGCAACTCTGCTTTTGAGGTTGATGTGAGCGCTATCGAACGCGTATTC
GACGAAGAGCCCTCTCCTCCAAAACTTTTATTCGTTGCAAGTCCGAATAA
CCCAGACGGAAGCGTGCTGTCAGAAAATTGCGTCAAACGGCTTCTCGCGC
TCCCAACTGTTGTTGTGATAGACGAAGCATACTTTGAGTTTTCAAACATG
AACATTTTTTCATGGGTTCCCTCCCACGAAAATCTTGTCGTATTACGAAC
CTTTTCGAAGTGGGCGGCTCTAGCAGGTATGCGGGTTGGATACGGCGCTT
TTCCGCTTTCAATCATAAAGCATATGTGGAAGATTAAGCAGCCGTATAAC
GTATCTGTTGCCGGCCAGATTGCTGCCATAGCCTCTATCAAAGAAAAGAG
CGATTTGCTGCAAAAAGTTGATCGCCTGGTGAAACAACGTCACATCTTCT
ACGATAGAATTGCAAAGTATGAATGGTTACATCCGTTTCCTTCGCAATCG
AACTACGTTCTTTGTCGCGTGGATAGCAATCGTGATGCCGCACAAATTAA
GCAGCAATTGGCAGATCGCGGTATTTTGATCCGTTATTACACAACCCCTG
GCTTGACAGATTGTATACGAGTGTCCATGGGAACCGAACAACAAATGGAG
GCCATGTACTCCGCTCTGGATGAATTGGACCAGCTGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_425:2067665..2068903-

>Gvermi12911.t1 ID=Gvermi12911.t1|Name=Gvermi12911.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1239bp|location=Sequence derived from alignment at ScGOVlb_425:2067665..2068903- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACCTCATTCGCCCCAGCTTTCCAGATATGTCTTCCTCTGCTACCTTT
CGAGAAACGCTCCTTTTCGGCAACCAAGCATAGCGTGTCTCCGCGGTTCT
CCCCCTCCGCTATTATGAATCCAACCAAGACCTTTTCGCCGGAAGATTCC
ATACGACCCGCGTTGCGTGAGATCTCCCCGTACACCCCTATTCTTCCATA
CGAGGTTCTGGCGGAGAAACTTGGCCGCCATCCCTCAGACATAGTCAAAC
TCGACGCTAACGAAAATCCTTTCGGCCCAGCTCCTTCCGTGGCCCCTGCG
CTTGCAGGTGCCAAACATCTGCATATTTATCCTGATCCCGAGTCCTCTTT
CCTGCGAGACGCCATATCGGAGTATACACGAGTGCCCAAAGAGTACATCA
TGGCTGGCGCTGGCGCTGATGAGCTTATTGACTTGCTGTTTCGCCTCTTT
GTCACCCCGGGCACGCAGGACAGTATCATCAACTGCCCGCCAACGTTTGG
TATGTACAAGTTTGATGCCGATGTGAATGGGGCGCGCATTGTCAACGTCC
CTCGCAACTCTGCTTTTGAGGTTGATGTGAGCGCTATCGAACGCGTATTC
GACGAAGAGCCCTCTCCTCCAAAACTTTTATTCGTTGCAAGTCCGAATAA
CCCAGACGGAAGCGTGCTGTCAGAAAATTGCGTCAAACGGCTTCTCGCGC
TCCCAACTGTTGTTGTGATAGACGAAGCATACTTTGAGTTTTCAAACATG
AACATTTTTTCATGGGTTCCCTCCCACGAAAATCTTGTCGTATTACGAAC
CTTTTCGAAGTGGGCGGCTCTAGCAGGTATGCGGGTTGGATACGGCGCTT
TTCCGCTTTCAATCATAAAGCATATGTGGAAGATTAAGCAGCCGTATAAC
GTATCTGTTGCCGGCCAGATTGCTGCCATAGCCTCTATCAAAGAAAAGAG
CGATTTGCTGCAAAAAGTTGATCGCCTGGTGAAACAACGTCACATCTTCT
ACGATAGAATTGCAAAGTATGAATGGTTACATCCGTTTCCTTCGCAATCG
AACTACGTTCTTTGTCGCGTGGATAGCAATCGTGATGCCGCACAAATTAA
GCAGCAATTGGCAGATCGCGGTATTTTGATCCGTTATTACACAACCCCTG
GCTTGACAGATTGTATACGAGTGTCCATGGGAACCGAACAACAAATGGAG
GCCATGTACTCCGCTCTGGATGAATTGGACCAGCTGTGA
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