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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 130081.XP_005705480.1 |
| PFAMs | CBS,Voltage_CLC |
| Max annot lvl | 2759|Eukaryota |
| Evalue | 2.45e-98 |
| EggNOG OGs | COG0038@1|root,KOG0474@2759|Eukaryota |
| Description | Chloride Channel |
| COG category | P |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gvermi12908.t1 ID=Gvermi12908.t1|Name=Gvermi12908.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=893bp MSQSFEENHNYALSYAAFFTPRTHKFDTIDFRLSPSPANIESYFPKSSKQ RTRHLRLAGLLGLIIGFVFALVGFVVDQLTRGLTIGLYTATDRLFRVTNF WVAVLFFVALSTVFVLIASLMVVYIAPLGAGSGIPELKSYLNGVRVPGFL AINSFFVKAIGIAFSLSGGLVCGKQGPMIHAGAILAAGMSQAASSRFSWR WKTSLFRVFRTEAWKRDFAAIGAAIGVAVAFGSPMGAWMWVYEDAATHWN WDLGIITLCGCLVGSTFTRILNLLAAGIPGNGFDDFFLNDIGKLAPLRGS TFLLKDIPWYFIIGLAGGVAGAILPLINKYITLFRYEHINQRRRRLFESA LIAILTAFLRIVIPYVASDCKPTNTVILDSLEIATFRDYSRFYCEEGEYS AWAAAIYNPSDSVVRSLLYATGPGNFSAPALAVAVLFYFVFIIWTYGAAV PAGVFFPGFLLGGVYGRLMGIGVQAIFPSRGDISLRGFAFVGAVSALAGV TRTISVSVIALEAVGGYTGAFAAVFVAVVAKLTSDFLYRRGIYDLHIDLK GIPFLSSEVPKLESYVRLRVSDVMQSKLIGVRRLSRISALVRMLATNEHH SFPVFLKLKQKQNASSTDAPELQNAGAIASGMANESYASLLASQLDQQEA REIDKQVPASTIITADNTGLQATIFDEGATQLLTLTDKKEVMNYRKIQKR NLPAGGTFGDDSHAKRPRDDEASRGSSSTSLHGFPPERPSDESDVPEFEL IGSIDRGTLLALLKHECEKHERLAAEDEVDQDQISREDLDSAWPNSSLLK QDQESVIVNRVRELKLLNVVIDLKPHINPDPLLMSDRAMPSTAYLLFRRT GARHILVANMRGGRVCGIMTRKDVLPESIEEVLSRMQGVKVE* back to topspliced messenger RNA >Gvermi12908.t1 ID=Gvermi12908.t1|Name=Gvermi12908.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2679bp|location=Sequence derived from alignment at ScGOVlb_425:2025679..2028357+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.
ATGTCGCAGTCATTCGAAGAGAACCACAACTATGCGCTGTCCTACGCCGC TTTCTTCACGCCTCGCACGCATAAGTTCGACACCATAGACTTTCGACTGT CCCCATCCCCAGCCAACATCGAATCGTATTTTCCCAAGTCTTCCAAGCAG CGCACCCGTCACCTGCGTCTCGCTGGTCTTCTGGGCTTGATAATCGGGTT TGTGTTTGCCTTGGTTGGCTTCGTAGTCGACCAGCTCACAAGGGGTCTTA CAATCGGTCTATACACAGCCACAGACCGCTTATTTCGCGTAACAAACTTC TGGGTTGCAGTACTCTTCTTCGTCGCTCTGTCCACCGTATTCGTGCTCAT TGCCTCTCTCATGGTCGTGTACATTGCCCCGCTCGGAGCTGGCTCTGGCA TTCCGGAGCTCAAAAGCTATCTCAACGGTGTCCGGGTGCCGGGTTTTCTC GCAATCAACTCCTTCTTCGTGAAGGCGATAGGGATAGCATTCAGTCTTTC TGGCGGGCTTGTGTGCGGCAAGCAAGGTCCTATGATTCATGCCGGCGCCA TTTTGGCTGCTGGCATGAGCCAGGCTGCAAGCTCGCGTTTCTCGTGGCGT TGGAAAACTTCTCTTTTCCGCGTGTTCCGAACAGAGGCGTGGAAACGGGA CTTTGCAGCCATTGGGGCTGCCATCGGCGTGGCAGTCGCCTTCGGATCGC CGATGGGAGCGTGGATGTGGGTATATGAGGATGCCGCCACACATTGGAAC TGGGACCTTGGCATCATCACCCTGTGTGGTTGCCTCGTTGGCAGCACCTT TACACGCATTCTCAATCTCCTGGCTGCCGGAATCCCGGGCAATGGCTTTG ACGATTTTTTTCTAAATGACATCGGCAAACTTGCGCCCCTGCGGGGTTCC ACCTTTCTGCTCAAGGACATACCATGGTACTTCATTATTGGACTTGCGGG GGGTGTTGCTGGAGCCATTTTACCCCTAATTAACAAGTACATAACGTTGT TCCGTTATGAACATATCAATCAGCGCAGACGCCGCCTGTTCGAAAGTGCG CTCATCGCTATATTAACGGCTTTCTTGCGCATTGTTATACCGTACGTTGC TAGTGATTGCAAGCCAACTAACACCGTCATCCTGGACTCTCTAGAGATTG CGACATTTAGAGACTACTCTCGATTTTACTGTGAGGAAGGTGAATATTCT GCTTGGGCAGCCGCCATCTACAACCCTTCGGACTCTGTTGTGCGTTCTCT TCTTTACGCCACTGGCCCAGGGAATTTTTCTGCTCCGGCATTGGCGGTGG CTGTACTGTTCTACTTTGTCTTTATTATTTGGACGTATGGCGCTGCGGTT CCTGCTGGTGTCTTCTTTCCCGGGTTCTTGCTGGGCGGTGTGTACGGGCG TCTTATGGGTATAGGCGTGCAGGCAATATTTCCGTCTCGCGGTGACATCT CATTGAGAGGATTCGCGTTCGTGGGGGCTGTCTCTGCGCTTGCTGGAGTC ACCAGAACCATATCGGTATCAGTTATCGCGCTCGAAGCCGTTGGAGGTTA TACCGGTGCTTTCGCAGCTGTATTTGTGGCCGTGGTCGCGAAGTTAACTA GCGATTTTCTGTACAGACGGGGAATATACGACCTGCACATTGATTTGAAG GGAATCCCGTTTTTGTCAAGTGAAGTGCCCAAGCTTGAATCTTATGTCCG TCTGCGCGTGTCTGATGTGATGCAAAGCAAGCTGATTGGCGTGCGCCGCC TTTCAAGGATTTCGGCCCTGGTTAGAATGCTTGCAACGAATGAACATCAC TCATTCCCCGTGTTTTTGAAGCTCAAACAAAAGCAGAATGCTTCAAGCAC TGATGCACCTGAATTGCAAAATGCCGGTGCAATCGCGTCGGGAATGGCAA ACGAGTCATACGCTTCACTGCTTGCTTCTCAATTGGATCAGCAAGAAGCC CGTGAAATTGACAAACAGGTTCCGGCATCAACGATTATTACAGCCGACAA TACTGGTTTGCAAGCAACGATATTCGATGAGGGAGCGACTCAACTTCTCA CCCTTACGGACAAGAAGGAGGTGATGAACTACAGGAAGATTCAGAAGCGA AATCTTCCTGCGGGCGGTACTTTTGGTGATGATTCACATGCAAAGCGTCC AAGAGATGATGAGGCTTCCCGAGGCTCATCATCCACGTCTTTGCACGGAT TTCCTCCAGAAAGACCGTCGGACGAAAGTGACGTACCGGAATTTGAGCTC ATCGGCAGCATTGATAGGGGTACATTGCTGGCCCTTCTGAAACATGAATG CGAGAAGCATGAGCGTTTGGCCGCCGAGGATGAAGTAGACCAGGACCAGA TCTCAAGAGAAGACCTTGATTCGGCGTGGCCGAATTCTTCATTATTGAAG CAGGACCAAGAAAGCGTGATTGTTAATAGAGTCAGAGAGTTGAAGCTCTT GAATGTTGTGATCGACCTCAAGCCGCATATTAATCCAGACCCGCTGCTAA TGTCTGATCGAGCAATGCCTTCCACGGCGTATTTGTTGTTCCGCCGCACT GGCGCTCGTCATATACTTGTAGCAAATATGAGAGGCGGACGCGTATGTGG AATCATGACACGTAAAGACGTGTTGCCGGAAAGCATTGAAGAGGTTCTCA GTCGTATGCAAGGTGTGAAAGTGGAGTAA back to topprotein sequence of Gvermi12908.t1 >Gvermi12908.t1 ID=Gvermi12908.t1|Name=Gvermi12908.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=893bp
MSQSFEENHNYALSYAAFFTPRTHKFDTIDFRLSPSPANIESYFPKSSKQ RTRHLRLAGLLGLIIGFVFALVGFVVDQLTRGLTIGLYTATDRLFRVTNF WVAVLFFVALSTVFVLIASLMVVYIAPLGAGSGIPELKSYLNGVRVPGFL AINSFFVKAIGIAFSLSGGLVCGKQGPMIHAGAILAAGMSQAASSRFSWR WKTSLFRVFRTEAWKRDFAAIGAAIGVAVAFGSPMGAWMWVYEDAATHWN WDLGIITLCGCLVGSTFTRILNLLAAGIPGNGFDDFFLNDIGKLAPLRGS TFLLKDIPWYFIIGLAGGVAGAILPLINKYITLFRYEHINQRRRRLFESA LIAILTAFLRIVIPYVASDCKPTNTVILDSLEIATFRDYSRFYCEEGEYS AWAAAIYNPSDSVVRSLLYATGPGNFSAPALAVAVLFYFVFIIWTYGAAV PAGVFFPGFLLGGVYGRLMGIGVQAIFPSRGDISLRGFAFVGAVSALAGV TRTISVSVIALEAVGGYTGAFAAVFVAVVAKLTSDFLYRRGIYDLHIDLK GIPFLSSEVPKLESYVRLRVSDVMQSKLIGVRRLSRISALVRMLATNEHH SFPVFLKLKQKQNASSTDAPELQNAGAIASGMANESYASLLASQLDQQEA REIDKQVPASTIITADNTGLQATIFDEGATQLLTLTDKKEVMNYRKIQKR NLPAGGTFGDDSHAKRPRDDEASRGSSSTSLHGFPPERPSDESDVPEFEL IGSIDRGTLLALLKHECEKHERLAAEDEVDQDQISREDLDSAWPNSSLLK QDQESVIVNRVRELKLLNVVIDLKPHINPDPLLMSDRAMPSTAYLLFRRT GARHILVANMRGGRVCGIMTRKDVLPESIEEVLSRMQGVKVE* back to topmRNA from alignment at ScGOVlb_425:2025679..2028357+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gvermi12908.t1 ID=Gvermi12908.t1|Name=Gvermi12908.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2679bp|location=Sequence derived from alignment at ScGOVlb_425:2025679..2028357+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGTCGCAGTCATTCGAAGAGAACCACAACTATGCGCTGTCCTACGCCGC
TTTCTTCACGCCTCGCACGCATAAGTTCGACACCATAGACTTTCGACTGT
CCCCATCCCCAGCCAACATCGAATCGTATTTTCCCAAGTCTTCCAAGCAG
CGCACCCGTCACCTGCGTCTCGCTGGTCTTCTGGGCTTGATAATCGGGTT
TGTGTTTGCCTTGGTTGGCTTCGTAGTCGACCAGCTCACAAGGGGTCTTA
CAATCGGTCTATACACAGCCACAGACCGCTTATTTCGCGTAACAAACTTC
TGGGTTGCAGTACTCTTCTTCGTCGCTCTGTCCACCGTATTCGTGCTCAT
TGCCTCTCTCATGGTCGTGTACATTGCCCCGCTCGGAGCTGGCTCTGGCA
TTCCGGAGCTCAAAAGCTATCTCAACGGTGTCCGGGTGCCGGGTTTTCTC
GCAATCAACTCCTTCTTCGTGAAGGCGATAGGGATAGCATTCAGTCTTTC
TGGCGGGCTTGTGTGCGGCAAGCAAGGTCCTATGATTCATGCCGGCGCCA
TTTTGGCTGCTGGCATGAGCCAGGCTGCAAGCTCGCGTTTCTCGTGGCGT
TGGAAAACTTCTCTTTTCCGCGTGTTCCGAACAGAGGCGTGGAAACGGGA
CTTTGCAGCCATTGGGGCTGCCATCGGCGTGGCAGTCGCCTTCGGATCGC
CGATGGGAGCGTGGATGTGGGTATATGAGGATGCCGCCACACATTGGAAC
TGGGACCTTGGCATCATCACCCTGTGTGGTTGCCTCGTTGGCAGCACCTT
TACACGCATTCTCAATCTCCTGGCTGCCGGAATCCCGGGCAATGGCTTTG
ACGATTTTTTTCTAAATGACATCGGCAAACTTGCGCCCCTGCGGGGTTCC
ACCTTTCTGCTCAAGGACATACCATGGTACTTCATTATTGGACTTGCGGG
GGGTGTTGCTGGAGCCATTTTACCCCTAATTAACAAGTACATAACGTTGT
TCCGTTATGAACATATCAATCAGCGCAGACGCCGCCTGTTCGAAAGTGCG
CTCATCGCTATATTAACGGCTTTCTTGCGCATTGTTATACCGTACGTTGC
TAGTGATTGCAAGCCAACTAACACCGTCATCCTGGACTCTCTAGAGATTG
CGACATTTAGAGACTACTCTCGATTTTACTGTGAGGAAGGTGAATATTCT
GCTTGGGCAGCCGCCATCTACAACCCTTCGGACTCTGTTGTGCGTTCTCT
TCTTTACGCCACTGGCCCAGGGAATTTTTCTGCTCCGGCATTGGCGGTGG
CTGTACTGTTCTACTTTGTCTTTATTATTTGGACGTATGGCGCTGCGGTT
CCTGCTGGTGTCTTCTTTCCCGGGTTCTTGCTGGGCGGTGTGTACGGGCG
TCTTATGGGTATAGGCGTGCAGGCAATATTTCCGTCTCGCGGTGACATCT
CATTGAGAGGATTCGCGTTCGTGGGGGCTGTCTCTGCGCTTGCTGGAGTC
ACCAGAACCATATCGGTATCAGTTATCGCGCTCGAAGCCGTTGGAGGTTA
TACCGGTGCTTTCGCAGCTGTATTTGTGGCCGTGGTCGCGAAGTTAACTA
GCGATTTTCTGTACAGACGGGGAATATACGACCTGCACATTGATTTGAAG
GGAATCCCGTTTTTGTCAAGTGAAGTGCCCAAGCTTGAATCTTATGTCCG
TCTGCGCGTGTCTGATGTGATGCAAAGCAAGCTGATTGGCGTGCGCCGCC
TTTCAAGGATTTCGGCCCTGGTTAGAATGCTTGCAACGAATGAACATCAC
TCATTCCCCGTGTTTTTGAAGCTCAAACAAAAGCAGAATGCTTCAAGCAC
TGATGCACCTGAATTGCAAAATGCCGGTGCAATCGCGTCGGGAATGGCAA
ACGAGTCATACGCTTCACTGCTTGCTTCTCAATTGGATCAGCAAGAAGCC
CGTGAAATTGACAAACAGGTTCCGGCATCAACGATTATTACAGCCGACAA
TACTGGTTTGCAAGCAACGATATTCGATGAGGGAGCGACTCAACTTCTCA
CCCTTACGGACAAGAAGGAGGTGATGAACTACAGGAAGATTCAGAAGCGA
AATCTTCCTGCGGGCGGTACTTTTGGTGATGATTCACATGCAAAGCGTCC
AAGAGATGATGAGGCTTCCCGAGGCTCATCATCCACGTCTTTGCACGGAT
TTCCTCCAGAAAGACCGTCGGACGAAAGTGACGTACCGGAATTTGAGCTC
ATCGGCAGCATTGATAGGGGTACATTGCTGGCCCTTCTGAAACATGAATG
CGAGAAGCATGAGCGTTTGGCCGCCGAGGATGAAGTAGACCAGGACCAGA
TCTCAAGAGAAGACCTTGATTCGGCGTGGCCGAATTCTTCATTATTGAAG
CAGGACCAAGAAAGCGTGATTGTTAATAGAGTCAGAGAGTTGAAGCTCTT
GAATGTTGTGATCGACCTCAAGCCGCATATTAATCCAGACCCGCTGCTAA
TGTCTGATCGAGCAATGCCTTCCACGGCGTATTTGTTGTTCCGCCGCACT
GGCGCTCGTCATATACTTGTAGCAAATATGAGAGGCGGACGCGTATGTGG
AATCATGACACGTAAAGACGTGTTGCCGGAAAGCATTGAAGAGGTTCTCA
GTCGTATGCAAGGTGTGAAAGTGGAGTAA back to topCoding sequence (CDS) from alignment at ScGOVlb_425:2025679..2028357+ >Gvermi12908.t1 ID=Gvermi12908.t1|Name=Gvermi12908.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2679bp|location=Sequence derived from alignment at ScGOVlb_425:2025679..2028357+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGTCGCAGTCATTCGAAGAGAACCACAACTATGCGCTGTCCTACGCCGC TTTCTTCACGCCTCGCACGCATAAGTTCGACACCATAGACTTTCGACTGT CCCCATCCCCAGCCAACATCGAATCGTATTTTCCCAAGTCTTCCAAGCAG CGCACCCGTCACCTGCGTCTCGCTGGTCTTCTGGGCTTGATAATCGGGTT TGTGTTTGCCTTGGTTGGCTTCGTAGTCGACCAGCTCACAAGGGGTCTTA CAATCGGTCTATACACAGCCACAGACCGCTTATTTCGCGTAACAAACTTC TGGGTTGCAGTACTCTTCTTCGTCGCTCTGTCCACCGTATTCGTGCTCAT TGCCTCTCTCATGGTCGTGTACATTGCCCCGCTCGGAGCTGGCTCTGGCA TTCCGGAGCTCAAAAGCTATCTCAACGGTGTCCGGGTGCCGGGTTTTCTC GCAATCAACTCCTTCTTCGTGAAGGCGATAGGGATAGCATTCAGTCTTTC TGGCGGGCTTGTGTGCGGCAAGCAAGGTCCTATGATTCATGCCGGCGCCA TTTTGGCTGCTGGCATGAGCCAGGCTGCAAGCTCGCGTTTCTCGTGGCGT TGGAAAACTTCTCTTTTCCGCGTGTTCCGAACAGAGGCGTGGAAACGGGA CTTTGCAGCCATTGGGGCTGCCATCGGCGTGGCAGTCGCCTTCGGATCGC CGATGGGAGCGTGGATGTGGGTATATGAGGATGCCGCCACACATTGGAAC TGGGACCTTGGCATCATCACCCTGTGTGGTTGCCTCGTTGGCAGCACCTT TACACGCATTCTCAATCTCCTGGCTGCCGGAATCCCGGGCAATGGCTTTG ACGATTTTTTTCTAAATGACATCGGCAAACTTGCGCCCCTGCGGGGTTCC ACCTTTCTGCTCAAGGACATACCATGGTACTTCATTATTGGACTTGCGGG GGGTGTTGCTGGAGCCATTTTACCCCTAATTAACAAGTACATAACGTTGT TCCGTTATGAACATATCAATCAGCGCAGACGCCGCCTGTTCGAAAGTGCG CTCATCGCTATATTAACGGCTTTCTTGCGCATTGTTATACCGTACGTTGC TAGTGATTGCAAGCCAACTAACACCGTCATCCTGGACTCTCTAGAGATTG CGACATTTAGAGACTACTCTCGATTTTACTGTGAGGAAGGTGAATATTCT GCTTGGGCAGCCGCCATCTACAACCCTTCGGACTCTGTTGTGCGTTCTCT TCTTTACGCCACTGGCCCAGGGAATTTTTCTGCTCCGGCATTGGCGGTGG CTGTACTGTTCTACTTTGTCTTTATTATTTGGACGTATGGCGCTGCGGTT CCTGCTGGTGTCTTCTTTCCCGGGTTCTTGCTGGGCGGTGTGTACGGGCG TCTTATGGGTATAGGCGTGCAGGCAATATTTCCGTCTCGCGGTGACATCT CATTGAGAGGATTCGCGTTCGTGGGGGCTGTCTCTGCGCTTGCTGGAGTC ACCAGAACCATATCGGTATCAGTTATCGCGCTCGAAGCCGTTGGAGGTTA TACCGGTGCTTTCGCAGCTGTATTTGTGGCCGTGGTCGCGAAGTTAACTA GCGATTTTCTGTACAGACGGGGAATATACGACCTGCACATTGATTTGAAG GGAATCCCGTTTTTGTCAAGTGAAGTGCCCAAGCTTGAATCTTATGTCCG TCTGCGCGTGTCTGATGTGATGCAAAGCAAGCTGATTGGCGTGCGCCGCC TTTCAAGGATTTCGGCCCTGGTTAGAATGCTTGCAACGAATGAACATCAC TCATTCCCCGTGTTTTTGAAGCTCAAACAAAAGCAGAATGCTTCAAGCAC TGATGCACCTGAATTGCAAAATGCCGGTGCAATCGCGTCGGGAATGGCAA ACGAGTCATACGCTTCACTGCTTGCTTCTCAATTGGATCAGCAAGAAGCC CGTGAAATTGACAAACAGGTTCCGGCATCAACGATTATTACAGCCGACAA TACTGGTTTGCAAGCAACGATATTCGATGAGGGAGCGACTCAACTTCTCA CCCTTACGGACAAGAAGGAGGTGATGAACTACAGGAAGATTCAGAAGCGA AATCTTCCTGCGGGCGGTACTTTTGGTGATGATTCACATGCAAAGCGTCC AAGAGATGATGAGGCTTCCCGAGGCTCATCATCCACGTCTTTGCACGGAT TTCCTCCAGAAAGACCGTCGGACGAAAGTGACGTACCGGAATTTGAGCTC ATCGGCAGCATTGATAGGGGTACATTGCTGGCCCTTCTGAAACATGAATG CGAGAAGCATGAGCGTTTGGCCGCCGAGGATGAAGTAGACCAGGACCAGA TCTCAAGAGAAGACCTTGATTCGGCGTGGCCGAATTCTTCATTATTGAAG CAGGACCAAGAAAGCGTGATTGTTAATAGAGTCAGAGAGTTGAAGCTCTT GAATGTTGTGATCGACCTCAAGCCGCATATTAATCCAGACCCGCTGCTAA TGTCTGATCGAGCAATGCCTTCCACGGCGTATTTGTTGTTCCGCCGCACT GGCGCTCGTCATATACTTGTAGCAAATATGAGAGGCGGACGCGTATGTGG AATCATGACACGTAAAGACGTGTTGCCGGAAAGCATTGAAGAGGTTCTCA GTCGTATGCAAGGTGTGAAAGTGGAGTAA back to top
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