Gvermi12894.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12894.t1
Unique NameGvermi12894.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length174
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1972402..1972923 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706413.1
Preferred nameBNA1
PFAMs3-HAO
Max annot lvl2759|Eukaryota
KEGG rclassRC00387
KEGG koko:K00452
KEGG ReactionR02665
KEGG Pathwayko00380,ko01100,map00380,map01100
KEGG ModuleM00038
GOsGO:0000334,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009072,GO:0009108,GO:0009117,GO:0009165,GO:0009308,GO:0009435,GO:0009987,GO:0016491,GO:0016701,GO:0016702,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019674,GO:0019752,GO:0034354,GO:0034627,GO:0034641,GO:0034654,GO:0042430,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0046496,GO:0051186,GO:0051188,GO:0051213,GO:0055086,GO:0055114,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605
Evalue4.5e-74
EggNOG OGsKOG3995@1|root,KOG3995@2759|Eukaryota
EC1.13.11.6
Description3-hydroxyanthranilate 3,4-dioxygenase activity
COG categoryH
BiGG ReactioniMM904.YJR025C,iND750.YJR025C
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12894Gvermi12894Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1972402..1972923 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12894.t1.start1Gvermi12894.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1972402..1972404 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12894.t1.CDS1Gvermi12894.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1972402..1972923 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12894.t1.exon1Gvermi12894.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1972402..1972923 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12894.t1.stop1Gvermi12894.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1972921..1972923 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12894.t1Gvermi12894.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1972402..1972923 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12894.t1 ID=Gvermi12894.t1|Name=Gvermi12894.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=174bp
MSRFQAFNLQKWLKENRHLLKPPVGNKLLCDGEFKVMVVAGPNARTDYHV
EEGEEWFYQLEGDMVLRVVDKGEFYDIPISAGDVFCLPPKVPHSPQRKPN
SIGIVVERERRAGEIDALQWYCQNETCRNLLHRKEFICGNLVRDLPPIIS
EYYADIGKRTCKKCGFVEEPPSL*
back to top

spliced messenger RNA

>Gvermi12894.t1 ID=Gvermi12894.t1|Name=Gvermi12894.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=522bp|location=Sequence derived from alignment at ScGOVlb_425:1972402..1972923+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTCGATTCCAGGCTTTTAACCTTCAAAAGTGGTTGAAGGAAAATCG
CCATCTGTTGAAACCGCCGGTGGGAAATAAGTTGCTCTGCGACGGAGAGT
TCAAGGTCATGGTTGTAGCTGGTCCCAATGCAAGGACAGATTATCATGTC
GAGGAAGGGGAAGAATGGTTTTATCAATTAGAGGGAGACATGGTCCTTCG
TGTAGTGGACAAAGGGGAGTTCTATGACATTCCGATATCCGCCGGAGACG
TTTTTTGTCTCCCTCCGAAAGTTCCACATTCACCTCAAAGGAAACCAAAT
TCTATCGGAATTGTTGTGGAAAGGGAACGACGTGCTGGTGAAATTGACGC
GCTTCAATGGTACTGCCAGAATGAAACATGTAGGAATCTGTTGCATAGAA
AAGAATTCATTTGTGGAAATCTTGTGAGAGATCTGCCTCCAATAATATCC
GAGTATTATGCCGACATAGGGAAAAGAACGTGCAAAAAGTGTGGTTTTGT
AGAAGAGCCCCCGAGCTTGTAA
back to top

protein sequence of Gvermi12894.t1

>Gvermi12894.t1 ID=Gvermi12894.t1|Name=Gvermi12894.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=174bp
MSRFQAFNLQKWLKENRHLLKPPVGNKLLCDGEFKVMVVAGPNARTDYHV
EEGEEWFYQLEGDMVLRVVDKGEFYDIPISAGDVFCLPPKVPHSPQRKPN
SIGIVVERERRAGEIDALQWYCQNETCRNLLHRKEFICGNLVRDLPPIIS
EYYADIGKRTCKKCGFVEEPPSL*
back to top

mRNA from alignment at ScGOVlb_425:1972402..1972923+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12894.t1 ID=Gvermi12894.t1|Name=Gvermi12894.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=522bp|location=Sequence derived from alignment at ScGOVlb_425:1972402..1972923+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGTCGATTCCAGGCTTTTAACCTTCAAAAGTGGTTGAAGGAAAATCG
CCATCTGTTGAAACCGCCGGTGGGAAATAAGTTGCTCTGCGACGGAGAGT
TCAAGGTCATGGTTGTAGCTGGTCCCAATGCAAGGACAGATTATCATGTC
GAGGAAGGGGAAGAATGGTTTTATCAATTAGAGGGAGACATGGTCCTTCG
TGTAGTGGACAAAGGGGAGTTCTATGACATTCCGATATCCGCCGGAGACG
TTTTTTGTCTCCCTCCGAAAGTTCCACATTCACCTCAAAGGAAACCAAAT
TCTATCGGAATTGTTGTGGAAAGGGAACGACGTGCTGGTGAAATTGACGC
GCTTCAATGGTACTGCCAGAATGAAACATGTAGGAATCTGTTGCATAGAA
AAGAATTCATTTGTGGAAATCTTGTGAGAGATCTGCCTCCAATAATATCC
GAGTATTATGCCGACATAGGGAAAAGAACGTGCAAAAAGTGTGGTTTTGT
AGAAGAGCCCCCGAGCTTGTAA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_425:1972402..1972923+

>Gvermi12894.t1 ID=Gvermi12894.t1|Name=Gvermi12894.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=522bp|location=Sequence derived from alignment at ScGOVlb_425:1972402..1972923+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGTCGATTCCAGGCTTTTAACCTTCAAAAGTGGTTGAAGGAAAATCG
CCATCTGTTGAAACCGCCGGTGGGAAATAAGTTGCTCTGCGACGGAGAGT
TCAAGGTCATGGTTGTAGCTGGTCCCAATGCAAGGACAGATTATCATGTC
GAGGAAGGGGAAGAATGGTTTTATCAATTAGAGGGAGACATGGTCCTTCG
TGTAGTGGACAAAGGGGAGTTCTATGACATTCCGATATCCGCCGGAGACG
TTTTTTGTCTCCCTCCGAAAGTTCCACATTCACCTCAAAGGAAACCAAAT
TCTATCGGAATTGTTGTGGAAAGGGAACGACGTGCTGGTGAAATTGACGC
GCTTCAATGGTACTGCCAGAATGAAACATGTAGGAATCTGTTGCATAGAA
AAGAATTCATTTGTGGAAATCTTGTGAGAGATCTGCCTCCAATAATATCC
GAGTATTATGCCGACATAGGGAAAAGAACGTGCAAAAAGTGTGGTTTTGT
AGAAGAGCCCCCGAGCTTGTAA
back to top