Gvermi12892.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12892.t1
Unique NameGvermi12892.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length457
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1969409..1970779 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2340.JV46_08260
Preferred namemtaD
PFAMsAmidohydro_1
Max annot lvl1236|Gammaproteobacteria
KEGG rclassRC00477
KEGG koko:K12960
KEGG ReactionR09660
KEGG Pathwayko00270,ko01100,map00270,map01100
Evalue6.42e-142
EggNOG OGsCOG0402@1|root,COG0402@2|Bacteria,1MVPA@1224|Proteobacteria,1RN13@1236|Gammaproteobacteria,1J4NS@118884|unclassified Gammaproteobacteria
EC3.5.4.28,3.5.4.31
DescriptionCatalyzes the deamination of 5-methylthioadenosine and S-adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L- homocysteine, respectively. Is also able to deaminate adenosine
COG categoryF
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12892Gvermi12892Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1969409..1970779 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12892.t1.stop1Gvermi12892.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1969409..1969411 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12892.t1.CDS1Gvermi12892.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1969409..1970779 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12892.t1.exon1Gvermi12892.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1969409..1970779 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12892.t1.start1Gvermi12892.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1970777..1970779 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12892.t1Gvermi12892.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1969409..1970779 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12892.t1 ID=Gvermi12892.t1|Name=Gvermi12892.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=457bp
MKPVETEIRARWVLPIAPDENVALDHYSVVISGGKILDILPSQEAQEKYS
PTEVVERPNSIVLPGFINAHTHSGMTIMRGRADDQPLLQWLHETVWPIER
AMACEEEFCEDGALLAAAEMIRGGVTCFSDMYFFPDAGAKAALRAGIRAI
IGIVFLMFPTAYASTPEEYEGRGEEFIERFKNQPLIHFTYAPHAPYTVPP
DIWLRLKDLSKANGIPIHTHMHETIDECTSSRVLDRSNPACHTSDEKCHP
IEDFNRKEILGPNFIGAHMVHLTDEEIALCAEKGVHVAHCPTSNAKLASG
FCPVHKLVKAGVNVAIGTDSACSNNSLDMLAEVKMAALVTKCVARDPTLL
PAPMALRMATINGARAFGLEDVTGSLEIGKSADLICIDVETHAGNTPVYD
PHSAVVYAASREDVTDVLVNGKFVLKDKLHCTLDLGDVLRRAEYWRARIV
KEIPLN*
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spliced messenger RNA

>Gvermi12892.t1 ID=Gvermi12892.t1|Name=Gvermi12892.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1371bp|location=Sequence derived from alignment at ScGOVlb_425:1969409..1970779- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCCTGTCGAAACTGAGATCCGTGCGAGATGGGTGCTTCCCATAGC
ACCAGACGAAAATGTCGCTCTCGACCATTACTCGGTAGTCATCAGTGGGG
GGAAAATATTGGACATACTACCATCACAAGAAGCACAAGAGAAGTACAGT
CCCACAGAAGTTGTGGAGCGACCGAACAGCATTGTGCTTCCCGGTTTCAT
CAACGCTCACACTCATTCCGGAATGACTATAATGAGAGGCCGCGCGGATG
ACCAGCCTCTTTTGCAATGGCTTCATGAGACCGTCTGGCCTATAGAACGA
GCAATGGCATGTGAGGAAGAATTTTGTGAGGACGGTGCCCTTCTGGCCGC
CGCTGAAATGATTCGTGGTGGAGTAACTTGCTTTTCCGATATGTACTTTT
TCCCAGATGCTGGCGCAAAGGCCGCCCTTAGAGCTGGCATAAGGGCCATC
ATTGGAATAGTCTTTCTGATGTTTCCAACTGCATACGCATCAACCCCTGA
AGAATATGAAGGTCGAGGAGAAGAATTTATAGAGCGATTCAAGAATCAAC
CTTTAATACACTTCACCTATGCGCCCCATGCTCCATATACAGTGCCTCCG
GATATCTGGCTACGGCTCAAGGATCTTTCCAAAGCAAATGGAATCCCAAT
TCATACTCATATGCATGAAACCATAGATGAGTGCACTTCCAGTCGAGTCT
TGGATAGGAGCAATCCTGCATGCCATACTAGTGACGAAAAATGCCATCCC
ATCGAGGACTTCAATCGAAAAGAAATTCTGGGACCGAACTTCATCGGGGC
CCATATGGTCCATCTTACCGACGAAGAAATTGCTTTATGTGCGGAGAAAG
GCGTACATGTCGCACATTGTCCTACTTCAAACGCTAAACTCGCCTCTGGG
TTTTGCCCTGTACACAAATTAGTCAAAGCTGGAGTCAATGTTGCGATTGG
GACCGACTCAGCGTGCAGCAATAATTCTCTTGATATGCTAGCAGAAGTGA
AAATGGCCGCGCTCGTCACCAAGTGCGTAGCCAGAGACCCCACTCTTCTT
CCAGCTCCTATGGCTCTCCGCATGGCGACAATCAATGGTGCGCGTGCGTT
TGGACTCGAAGATGTCACTGGGAGCTTGGAGATAGGAAAGTCCGCCGATC
TGATTTGCATCGATGTGGAGACTCATGCGGGAAACACCCCGGTATACGAT
CCACATTCAGCCGTTGTTTACGCAGCTTCTAGAGAAGACGTCACGGATGT
ACTTGTCAACGGTAAATTCGTGTTAAAAGACAAGTTGCACTGCACACTTG
ACTTGGGCGATGTTTTGCGCCGAGCTGAGTACTGGAGGGCCAGAATTGTC
AAAGAAATTCCGCTGAACTGA
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protein sequence of Gvermi12892.t1

>Gvermi12892.t1 ID=Gvermi12892.t1|Name=Gvermi12892.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=457bp
MKPVETEIRARWVLPIAPDENVALDHYSVVISGGKILDILPSQEAQEKYS
PTEVVERPNSIVLPGFINAHTHSGMTIMRGRADDQPLLQWLHETVWPIER
AMACEEEFCEDGALLAAAEMIRGGVTCFSDMYFFPDAGAKAALRAGIRAI
IGIVFLMFPTAYASTPEEYEGRGEEFIERFKNQPLIHFTYAPHAPYTVPP
DIWLRLKDLSKANGIPIHTHMHETIDECTSSRVLDRSNPACHTSDEKCHP
IEDFNRKEILGPNFIGAHMVHLTDEEIALCAEKGVHVAHCPTSNAKLASG
FCPVHKLVKAGVNVAIGTDSACSNNSLDMLAEVKMAALVTKCVARDPTLL
PAPMALRMATINGARAFGLEDVTGSLEIGKSADLICIDVETHAGNTPVYD
PHSAVVYAASREDVTDVLVNGKFVLKDKLHCTLDLGDVLRRAEYWRARIV
KEIPLN*
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mRNA from alignment at ScGOVlb_425:1969409..1970779-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12892.t1 ID=Gvermi12892.t1|Name=Gvermi12892.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1371bp|location=Sequence derived from alignment at ScGOVlb_425:1969409..1970779- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGCCTGTCGAAACTGAGATCCGTGCGAGATGGGTGCTTCCCATAGC
ACCAGACGAAAATGTCGCTCTCGACCATTACTCGGTAGTCATCAGTGGGG
GGAAAATATTGGACATACTACCATCACAAGAAGCACAAGAGAAGTACAGT
CCCACAGAAGTTGTGGAGCGACCGAACAGCATTGTGCTTCCCGGTTTCAT
CAACGCTCACACTCATTCCGGAATGACTATAATGAGAGGCCGCGCGGATG
ACCAGCCTCTTTTGCAATGGCTTCATGAGACCGTCTGGCCTATAGAACGA
GCAATGGCATGTGAGGAAGAATTTTGTGAGGACGGTGCCCTTCTGGCCGC
CGCTGAAATGATTCGTGGTGGAGTAACTTGCTTTTCCGATATGTACTTTT
TCCCAGATGCTGGCGCAAAGGCCGCCCTTAGAGCTGGCATAAGGGCCATC
ATTGGAATAGTCTTTCTGATGTTTCCAACTGCATACGCATCAACCCCTGA
AGAATATGAAGGTCGAGGAGAAGAATTTATAGAGCGATTCAAGAATCAAC
CTTTAATACACTTCACCTATGCGCCCCATGCTCCATATACAGTGCCTCCG
GATATCTGGCTACGGCTCAAGGATCTTTCCAAAGCAAATGGAATCCCAAT
TCATACTCATATGCATGAAACCATAGATGAGTGCACTTCCAGTCGAGTCT
TGGATAGGAGCAATCCTGCATGCCATACTAGTGACGAAAAATGCCATCCC
ATCGAGGACTTCAATCGAAAAGAAATTCTGGGACCGAACTTCATCGGGGC
CCATATGGTCCATCTTACCGACGAAGAAATTGCTTTATGTGCGGAGAAAG
GCGTACATGTCGCACATTGTCCTACTTCAAACGCTAAACTCGCCTCTGGG
TTTTGCCCTGTACACAAATTAGTCAAAGCTGGAGTCAATGTTGCGATTGG
GACCGACTCAGCGTGCAGCAATAATTCTCTTGATATGCTAGCAGAAGTGA
AAATGGCCGCGCTCGTCACCAAGTGCGTAGCCAGAGACCCCACTCTTCTT
CCAGCTCCTATGGCTCTCCGCATGGCGACAATCAATGGTGCGCGTGCGTT
TGGACTCGAAGATGTCACTGGGAGCTTGGAGATAGGAAAGTCCGCCGATC
TGATTTGCATCGATGTGGAGACTCATGCGGGAAACACCCCGGTATACGAT
CCACATTCAGCCGTTGTTTACGCAGCTTCTAGAGAAGACGTCACGGATGT
ACTTGTCAACGGTAAATTCGTGTTAAAAGACAAGTTGCACTGCACACTTG
ACTTGGGCGATGTTTTGCGCCGAGCTGAGTACTGGAGGGCCAGAATTGTC
AAAGAAATTCCGCTGAACTGA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1969409..1970779-

>Gvermi12892.t1 ID=Gvermi12892.t1|Name=Gvermi12892.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1371bp|location=Sequence derived from alignment at ScGOVlb_425:1969409..1970779- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGCCTGTCGAAACTGAGATCCGTGCGAGATGGGTGCTTCCCATAGC
ACCAGACGAAAATGTCGCTCTCGACCATTACTCGGTAGTCATCAGTGGGG
GGAAAATATTGGACATACTACCATCACAAGAAGCACAAGAGAAGTACAGT
CCCACAGAAGTTGTGGAGCGACCGAACAGCATTGTGCTTCCCGGTTTCAT
CAACGCTCACACTCATTCCGGAATGACTATAATGAGAGGCCGCGCGGATG
ACCAGCCTCTTTTGCAATGGCTTCATGAGACCGTCTGGCCTATAGAACGA
GCAATGGCATGTGAGGAAGAATTTTGTGAGGACGGTGCCCTTCTGGCCGC
CGCTGAAATGATTCGTGGTGGAGTAACTTGCTTTTCCGATATGTACTTTT
TCCCAGATGCTGGCGCAAAGGCCGCCCTTAGAGCTGGCATAAGGGCCATC
ATTGGAATAGTCTTTCTGATGTTTCCAACTGCATACGCATCAACCCCTGA
AGAATATGAAGGTCGAGGAGAAGAATTTATAGAGCGATTCAAGAATCAAC
CTTTAATACACTTCACCTATGCGCCCCATGCTCCATATACAGTGCCTCCG
GATATCTGGCTACGGCTCAAGGATCTTTCCAAAGCAAATGGAATCCCAAT
TCATACTCATATGCATGAAACCATAGATGAGTGCACTTCCAGTCGAGTCT
TGGATAGGAGCAATCCTGCATGCCATACTAGTGACGAAAAATGCCATCCC
ATCGAGGACTTCAATCGAAAAGAAATTCTGGGACCGAACTTCATCGGGGC
CCATATGGTCCATCTTACCGACGAAGAAATTGCTTTATGTGCGGAGAAAG
GCGTACATGTCGCACATTGTCCTACTTCAAACGCTAAACTCGCCTCTGGG
TTTTGCCCTGTACACAAATTAGTCAAAGCTGGAGTCAATGTTGCGATTGG
GACCGACTCAGCGTGCAGCAATAATTCTCTTGATATGCTAGCAGAAGTGA
AAATGGCCGCGCTCGTCACCAAGTGCGTAGCCAGAGACCCCACTCTTCTT
CCAGCTCCTATGGCTCTCCGCATGGCGACAATCAATGGTGCGCGTGCGTT
TGGACTCGAAGATGTCACTGGGAGCTTGGAGATAGGAAAGTCCGCCGATC
TGATTTGCATCGATGTGGAGACTCATGCGGGAAACACCCCGGTATACGAT
CCACATTCAGCCGTTGTTTACGCAGCTTCTAGAGAAGACGTCACGGATGT
ACTTGTCAACGGTAAATTCGTGTTAAAAGACAAGTTGCACTGCACACTTG
ACTTGGGCGATGTTTTGCGCCGAGCTGAGTACTGGAGGGCCAGAATTGTC
AAAGAAATTCCGCTGAACTGA
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