Gvermi12891.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12891.t1
Unique NameGvermi12891.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length310
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1966550..1967479 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMT494CT
PFAMsTraB
Max annot lvl2759|Eukaryota
Evalue1.36e-22
EggNOG OGsCOG1916@1|root,KOG2860@2759|Eukaryota
DescriptionTraB family
COG categoryKLT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12891Gvermi12891Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1966550..1967479 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12891.t1.stop1Gvermi12891.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1966550..1966552 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12891.t1.CDS1Gvermi12891.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1966550..1967479 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12891.t1.exon1Gvermi12891.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1966550..1967479 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12891.t1.start1Gvermi12891.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1967477..1967479 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12891.t1Gvermi12891.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1966550..1967479 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12891.t1 ID=Gvermi12891.t1|Name=Gvermi12891.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=310bp
MIARQALVVSQPSISKHMKVLHRIPLARQKHSYPSRSTAVLESKYGIVHL
LGTMHIAEASAEATRNLITREHQKGSLGAVFLELDQDRFDRLKRAASLPD
ESLLSHALKILSSHRSPLAGLMELGIGSIYRVLHRLGFASGVDFKAAVET
AEDLNVPIILGDQELRITMRRLGEGFRTDFDLQRIMAILMARSDSRGPES
TVEHKLGEAFQAMASGDVAKGQAKLAELIDRNTVHQLIEPMRLFAPNVAR
AMLYERDVIMAKNLIKAAKDLHKERNVIVAVVGLAHVEGIADEWDSQIED
LERPINNGV*
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spliced messenger RNA

>Gvermi12891.t1 ID=Gvermi12891.t1|Name=Gvermi12891.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=930bp|location=Sequence derived from alignment at ScGOVlb_425:1966550..1967479- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTGCACGACAAGCTTTGGTGGTGTCACAACCGAGCATTAGCAAGCA
CATGAAGGTTCTACATAGAATTCCTCTCGCGCGTCAGAAGCACTCTTATC
CATCTCGCAGCACTGCCGTTCTTGAGTCCAAGTATGGAATTGTACACCTG
TTAGGCACAATGCATATAGCAGAAGCGTCTGCGGAAGCAACTCGCAATCT
TATTACGCGAGAGCATCAGAAAGGGTCGTTAGGCGCTGTTTTCCTGGAAC
TTGACCAAGACCGCTTCGACCGGCTAAAAAGAGCGGCGTCCTTGCCTGAC
GAGTCGCTCCTCTCGCATGCTCTAAAGATCCTTTCAAGTCATAGAAGTCC
CCTCGCTGGGCTTATGGAGCTGGGGATTGGTAGTATATACCGCGTTTTGC
ACCGCCTTGGCTTCGCTAGCGGCGTGGACTTCAAGGCCGCTGTTGAAACT
GCAGAGGATTTGAACGTACCTATTATCCTTGGCGATCAGGAGCTGCGGAT
AACGATGCGTCGCCTTGGCGAAGGGTTTCGCACAGACTTCGATTTGCAGC
GAATAATGGCCATTCTGATGGCTCGCTCAGACTCGCGGGGCCCGGAGTCT
ACGGTAGAGCACAAACTGGGAGAAGCGTTCCAAGCAATGGCTTCAGGGGA
TGTTGCGAAAGGTCAAGCGAAACTGGCAGAACTCATTGATCGCAACACTG
TCCACCAGCTTATAGAACCCATGCGTCTTTTTGCGCCGAACGTAGCACGG
GCAATGCTGTATGAGCGCGATGTCATAATGGCCAAAAATTTAATCAAGGC
GGCCAAAGACTTGCACAAGGAAAGAAATGTTATTGTCGCCGTAGTGGGCT
TGGCTCACGTTGAAGGCATTGCAGATGAATGGGATTCCCAGATTGAAGAT
CTCGAGCGCCCAATCAACAATGGCGTGTAG
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protein sequence of Gvermi12891.t1

>Gvermi12891.t1 ID=Gvermi12891.t1|Name=Gvermi12891.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=310bp
MIARQALVVSQPSISKHMKVLHRIPLARQKHSYPSRSTAVLESKYGIVHL
LGTMHIAEASAEATRNLITREHQKGSLGAVFLELDQDRFDRLKRAASLPD
ESLLSHALKILSSHRSPLAGLMELGIGSIYRVLHRLGFASGVDFKAAVET
AEDLNVPIILGDQELRITMRRLGEGFRTDFDLQRIMAILMARSDSRGPES
TVEHKLGEAFQAMASGDVAKGQAKLAELIDRNTVHQLIEPMRLFAPNVAR
AMLYERDVIMAKNLIKAAKDLHKERNVIVAVVGLAHVEGIADEWDSQIED
LERPINNGV*
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mRNA from alignment at ScGOVlb_425:1966550..1967479-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12891.t1 ID=Gvermi12891.t1|Name=Gvermi12891.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=930bp|location=Sequence derived from alignment at ScGOVlb_425:1966550..1967479- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATTGCACGACAAGCTTTGGTGGTGTCACAACCGAGCATTAGCAAGCA
CATGAAGGTTCTACATAGAATTCCTCTCGCGCGTCAGAAGCACTCTTATC
CATCTCGCAGCACTGCCGTTCTTGAGTCCAAGTATGGAATTGTACACCTG
TTAGGCACAATGCATATAGCAGAAGCGTCTGCGGAAGCAACTCGCAATCT
TATTACGCGAGAGCATCAGAAAGGGTCGTTAGGCGCTGTTTTCCTGGAAC
TTGACCAAGACCGCTTCGACCGGCTAAAAAGAGCGGCGTCCTTGCCTGAC
GAGTCGCTCCTCTCGCATGCTCTAAAGATCCTTTCAAGTCATAGAAGTCC
CCTCGCTGGGCTTATGGAGCTGGGGATTGGTAGTATATACCGCGTTTTGC
ACCGCCTTGGCTTCGCTAGCGGCGTGGACTTCAAGGCCGCTGTTGAAACT
GCAGAGGATTTGAACGTACCTATTATCCTTGGCGATCAGGAGCTGCGGAT
AACGATGCGTCGCCTTGGCGAAGGGTTTCGCACAGACTTCGATTTGCAGC
GAATAATGGCCATTCTGATGGCTCGCTCAGACTCGCGGGGCCCGGAGTCT
ACGGTAGAGCACAAACTGGGAGAAGCGTTCCAAGCAATGGCTTCAGGGGA
TGTTGCGAAAGGTCAAGCGAAACTGGCAGAACTCATTGATCGCAACACTG
TCCACCAGCTTATAGAACCCATGCGTCTTTTTGCGCCGAACGTAGCACGG
GCAATGCTGTATGAGCGCGATGTCATAATGGCCAAAAATTTAATCAAGGC
GGCCAAAGACTTGCACAAGGAAAGAAATGTTATTGTCGCCGTAGTGGGCT
TGGCTCACGTTGAAGGCATTGCAGATGAATGGGATTCCCAGATTGAAGAT
CTCGAGCGCCCAATCAACAATGGCGTGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_425:1966550..1967479-

>Gvermi12891.t1 ID=Gvermi12891.t1|Name=Gvermi12891.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=930bp|location=Sequence derived from alignment at ScGOVlb_425:1966550..1967479- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATTGCACGACAAGCTTTGGTGGTGTCACAACCGAGCATTAGCAAGCA
CATGAAGGTTCTACATAGAATTCCTCTCGCGCGTCAGAAGCACTCTTATC
CATCTCGCAGCACTGCCGTTCTTGAGTCCAAGTATGGAATTGTACACCTG
TTAGGCACAATGCATATAGCAGAAGCGTCTGCGGAAGCAACTCGCAATCT
TATTACGCGAGAGCATCAGAAAGGGTCGTTAGGCGCTGTTTTCCTGGAAC
TTGACCAAGACCGCTTCGACCGGCTAAAAAGAGCGGCGTCCTTGCCTGAC
GAGTCGCTCCTCTCGCATGCTCTAAAGATCCTTTCAAGTCATAGAAGTCC
CCTCGCTGGGCTTATGGAGCTGGGGATTGGTAGTATATACCGCGTTTTGC
ACCGCCTTGGCTTCGCTAGCGGCGTGGACTTCAAGGCCGCTGTTGAAACT
GCAGAGGATTTGAACGTACCTATTATCCTTGGCGATCAGGAGCTGCGGAT
AACGATGCGTCGCCTTGGCGAAGGGTTTCGCACAGACTTCGATTTGCAGC
GAATAATGGCCATTCTGATGGCTCGCTCAGACTCGCGGGGCCCGGAGTCT
ACGGTAGAGCACAAACTGGGAGAAGCGTTCCAAGCAATGGCTTCAGGGGA
TGTTGCGAAAGGTCAAGCGAAACTGGCAGAACTCATTGATCGCAACACTG
TCCACCAGCTTATAGAACCCATGCGTCTTTTTGCGCCGAACGTAGCACGG
GCAATGCTGTATGAGCGCGATGTCATAATGGCCAAAAATTTAATCAAGGC
GGCCAAAGACTTGCACAAGGAAAGAAATGTTATTGTCGCCGTAGTGGGCT
TGGCTCACGTTGAAGGCATTGCAGATGAATGGGATTCCCAGATTGAAGAT
CTCGAGCGCCCAATCAACAATGGCGTGTAG
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