Gvermi12889.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12889.t1
Unique NameGvermi12889.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length297
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1944932..1945925 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702916.1
PFAMsPP2C
Max annot lvl2759|Eukaryota
KEGG koko:K01090,ko:K04457,ko:K14803,ko:K17499,ko:K17505
KEGG Pathwayko04010,map04010
GOsGO:0005575,GO:0016020
Evalue4.92e-18
EggNOG OGsCOG0631@1|root,KOG0698@2759|Eukaryota
EC3.1.3.16
Descriptionprotein serine/threonine phosphatase activity
COG categoryT
BRITEko00000,ko00001,ko01000,ko01009,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12889Gvermi12889Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1944932..1945925 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12889.t1Gvermi12889.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1944932..1945925 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12889.t1.start1Gvermi12889.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1944932..1944934 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12889.t1.CDS1Gvermi12889.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1944932..1945543 +
Gvermi12889.t1.CDS2Gvermi12889.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1945647..1945925 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12889.t1.exon1Gvermi12889.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1944932..1945543 +
Gvermi12889.t1.exon2Gvermi12889.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1945647..1945925 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12889.t1.intron1Gvermi12889.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 1945544..1945646 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12889.t1.stop1Gvermi12889.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1945923..1945925 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12889.t1 ID=Gvermi12889.t1|Name=Gvermi12889.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=297bp
MFRDFFRQLFTPISFVKSSTKSVMGTMHRADNVPNQDSSFILHSPNDQPQ
PRRNSAENLSGVQGFFAIGVFDGHGPRGQEASALAAQRMQFALSRISEDQ
NDVSMEQMVMTAFAETTAALNSAPCSANSGTTGSVVAVRNGDVAVANVGD
SAVYCISRSKWTRRPRVNYVSPMHRPTNPAEAERVKLSGGQIQNGYVVNE
HCNMGIAVSRTIGDRDMGRYGCIPDPTIHTFKLQRRDYTFVIATDGLWDV
PGLESEEAVLSAARGLVVTPHKVCKRLQKKAKEPKDDCTVACMIVV*
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spliced messenger RNA

>Gvermi12889.t1 ID=Gvermi12889.t1|Name=Gvermi12889.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=891bp|location=Sequence derived from alignment at ScGOVlb_425:1944932..1945925+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTCGCGACTTCTTCCGTCAACTTTTCACTCCCATTTCCTTCGTCAA
AAGTTCCACAAAATCCGTAATGGGAACGATGCATCGCGCTGACAACGTCC
CGAACCAGGATAGCTCATTTATCCTGCATTCCCCCAATGATCAACCCCAA
CCGCGGCGCAACTCAGCAGAAAACCTTTCTGGCGTTCAAGGCTTTTTCGC
CATAGGCGTATTCGATGGTCACGGTCCGAGAGGGCAAGAGGCAAGTGCTC
TGGCCGCACAACGAATGCAATTTGCCCTCAGCCGTATTTCGGAGGACCAG
AACGATGTCTCGATGGAGCAAATGGTGATGACGGCCTTTGCGGAGACCAC
GGCCGCGTTGAATTCGGCTCCGTGCAGTGCAAACAGCGGCACCACTGGTT
CGGTGGTCGCTGTGAGGAATGGCGACGTCGCAGTAGCTAACGTCGGCGAC
TCAGCCGTTTACTGCATATCCCGCTCCAAGTGGACCCGGCGTCCAAGAGT
GAATTACGTCAGTCCAATGCACAGGCCGACGAACCCCGCCGAGGCCGAGC
GGGTCAAACTAAGCGGCGGCCAAATCCAAAACGGATACGTCGTAAACGAG
CACTGCAACATGGGAATCGCAGTCAGCCGCACTATCGGCGACCGGGACAT
GGGTCGGTATGGATGCATTCCAGACCCAACGATCCACACTTTCAAGCTGC
AACGAAGGGATTATACCTTCGTCATAGCCACTGATGGGCTGTGGGACGTG
CCCGGATTAGAAAGTGAAGAAGCCGTGCTTTCAGCAGCTAGGGGGCTGGT
GGTCACCCCTCACAAGGTTTGCAAACGGTTGCAGAAGAAAGCCAAAGAGC
CGAAAGACGATTGCACTGTAGCCTGTATGATAGTGGTTTAG
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protein sequence of Gvermi12889.t1

>Gvermi12889.t1 ID=Gvermi12889.t1|Name=Gvermi12889.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=297bp
MFRDFFRQLFTPISFVKSSTKSVMGTMHRADNVPNQDSSFILHSPNDQPQ
PRRNSAENLSGVQGFFAIGVFDGHGPRGQEASALAAQRMQFALSRISEDQ
NDVSMEQMVMTAFAETTAALNSAPCSANSGTTGSVVAVRNGDVAVANVGD
SAVYCISRSKWTRRPRVNYVSPMHRPTNPAEAERVKLSGGQIQNGYVVNE
HCNMGIAVSRTIGDRDMGRYGCIPDPTIHTFKLQRRDYTFVIATDGLWDV
PGLESEEAVLSAARGLVVTPHKVCKRLQKKAKEPKDDCTVACMIVV*
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mRNA from alignment at ScGOVlb_425:1944932..1945925+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12889.t1 ID=Gvermi12889.t1|Name=Gvermi12889.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=994bp|location=Sequence derived from alignment at ScGOVlb_425:1944932..1945925+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTTCGCGACTTCTTCCGTCAACTTTTCACTCCCATTTCCTTCGTCAA
AAGTTCCACAAAATCCGTAATGGGAACGATGCATCGCGCTGACAACGTCC
CGAACCAGGATAGCTCATTTATCCTGCATTCCCCCAATGATCAACCCCAA
CCGCGGCGCAACTCAGCAGAAAACCTTTCTGGCGTTCAAGGCTTTTTCGC
CATAGGCGTATTCGATGGTCACGGTCCGAGAGGGCAAGAGGCAAGTGCTC
TGGCCGCACAACGAATGCAATTTGCCCTCAGCCGTATTTCGGAGGACCAG
AACGATGTCTCGATGGAGCAAATGGTGATGACGGCCTTTGCGGAGACCAC
GGCCGCGTTGAATTCGGCTCCGTGCAGTGCAAACAGCGGCACCACTGGTT
CGGTGGTCGCTGTGAGGAATGGCGACGTCGCAGTAGCTAACGTCGGCGAC
TCAGCCGTTTACTGCATATCCCGCTCCAAGTGGACCCGGCGTCCAAGAGT
GAATTACGTCAGTCCAATGCACAGGCCGACGAACCCCGCCGAGGCCGAGC
GGGTCAAACTAAGCGGCGGCCAAATCCAAAACGGATACGTCGTAAACGAG
CACTGCAACATGGTAAGTCTAATTGCATGCTTCTCAATCGCGTGCCATTC
GCTTTTCACAATGTTCTAACTTCTGTTGCACACTTCATTTGATGCACTTT
TTTTCTCGATCGAAGGGAATCGCAGTCAGCCGCACTATCGGCGACCGGGA
CATGGGTCGGTATGGATGCATTCCAGACCCAACGATCCACACTTTCAAGC
TGCAACGAAGGGATTATACCTTCGTCATAGCCACTGATGGGCTGTGGGAC
GTGCCCGGATTAGAAAGTGAAGAAGCCGTGCTTTCAGCAGCTAGGGGGCT
GGTGGTCACCCCTCACAAGGTTTGCAAACGGTTGCAGAAGAAAGCCAAAG
AGCCGAAAGACGATTGCACTGTAGCCTGTATGATAGTGGTTTAG
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Coding sequence (CDS) from alignment at ScGOVlb_425:1944932..1945925+

>Gvermi12889.t1 ID=Gvermi12889.t1|Name=Gvermi12889.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=891bp|location=Sequence derived from alignment at ScGOVlb_425:1944932..1945925+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTTCGCGACTTCTTCCGTCAACTTTTCACTCCCATTTCCTTCGTCAA
AAGTTCCACAAAATCCGTAATGGGAACGATGCATCGCGCTGACAACGTCC
CGAACCAGGATAGCTCATTTATCCTGCATTCCCCCAATGATCAACCCCAA
CCGCGGCGCAACTCAGCAGAAAACCTTTCTGGCGTTCAAGGCTTTTTCGC
CATAGGCGTATTCGATGGTCACGGTCCGAGAGGGCAAGAGGCAAGTGCTC
TGGCCGCACAACGAATGCAATTTGCCCTCAGCCGTATTTCGGAGGACCAG
AACGATGTCTCGATGGAGCAAATGGTGATGACGGCCTTTGCGGAGACCAC
GGCCGCGTTGAATTCGGCTCCGTGCAGTGCAAACAGCGGCACCACTGGTT
CGGTGGTCGCTGTGAGGAATGGCGACGTCGCAGTAGCTAACGTCGGCGAC
TCAGCCGTTTACTGCATATCCCGCTCCAAGTGGACCCGGCGTCCAAGAGT
GAATTACGTCAGTCCAATGCACAGGCCGACGAACCCCGCCGAGGCCGAGC
GGGTCAAACTAAGCGGCGGCCAAATCCAAAACGGATACGTCGTAAACGAG
CACTGCAACATGGGAATCGCAGTCAGCCGCACTATCGGCGACCGGGACAT
GGGTCGGTATGGATGCATTCCAGACCCAACGATCCACACTTTCAAGCTGC
AACGAAGGGATTATACCTTCGTCATAGCCACTGATGGGCTGTGGGACGTG
CCCGGATTAGAAAGTGAAGAAGCCGTGCTTTCAGCAGCTAGGGGGCTGGT
GGTCACCCCTCACAAGGTTTGCAAACGGTTGCAGAAGAAAGCCAAAGAGC
CGAAAGACGATTGCACTGTAGCCTGTATGATAGTGGTTTAG
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