Gvermi12887.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12887.t1
Unique NameGvermi12887.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length377
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1935371..1936501 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog242159.ABO96548
PFAMstRNA-synt_1b
Max annot lvl3041|Chlorophyta
KEGG rclassRC00055,RC00523
KEGG koko:K01866
KEGG ReactionR02918
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Evalue1.86e-179
EggNOG OGsCOG0162@1|root,KOG2144@2759|Eukaryota,37ICN@33090|Viridiplantae,34JRD@3041|Chlorophyta
EC6.1.1.1
DescriptionBelongs to the class-I aminoacyl-tRNA synthetase family
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12887Gvermi12887Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1935371..1936501 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12887.t1.start1Gvermi12887.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1935371..1935373 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12887.t1.CDS1Gvermi12887.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1935371..1936501 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12887.t1.exon1Gvermi12887.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1935371..1936501 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12887.t1.stop1Gvermi12887.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1936499..1936501 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12887.t1Gvermi12887.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1935371..1936501 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12887.t1 ID=Gvermi12887.t1|Name=Gvermi12887.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=377bp
MSEQAAGVAPSQSADRADAKLVNGMTIDERVQLIMSVGEECHTEEGLRLL
LEKKPGPPVCYDGFEPSGRMHIAQGIQKSINVNKLTEGGCHFVFWVADWF
AQLNNKMGGDLKKIRVVGEYFIEVWKACGMNMDNVKFLWASDEINRRSDE
YWTRVMDIARLNSVSRVKRCCTIMGRGDGDELSAAQIMYPCMQCADIFFL
KADICQLGMDQRKVNMLAREYCDQSTPKIKNKPIILSHHMMPGLKQGQAK
MSKSDPSSAIYMEDSVQEVNSKIKGAFCPEQQVEDNPVLEYVKYLVFPKL
GRVSVKRSEANGGDKTYSSYAQLEAEFGSGALHPGDLKPALARALNEMLQ
PVRDHFKTDAHARKLLAQVKRYKTTK*
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spliced messenger RNA

>Gvermi12887.t1 ID=Gvermi12887.t1|Name=Gvermi12887.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1131bp|location=Sequence derived from alignment at ScGOVlb_425:1935371..1936501+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGAACAGGCTGCGGGCGTGGCGCCCTCGCAGAGCGCAGACAGGGC
CGACGCCAAGCTCGTGAATGGGATGACAATCGACGAGCGCGTGCAACTGA
TCATGTCCGTCGGAGAGGAGTGCCACACGGAGGAAGGGTTGCGGCTGCTG
CTGGAGAAGAAGCCGGGGCCGCCGGTGTGCTACGACGGGTTTGAGCCGTC
AGGGCGAATGCACATCGCGCAGGGCATTCAAAAGTCCATCAACGTGAACA
AGCTGACGGAAGGCGGGTGCCACTTTGTGTTCTGGGTGGCGGACTGGTTT
GCACAGCTCAACAACAAGATGGGCGGCGACCTCAAGAAGATCCGTGTGGT
GGGCGAGTACTTTATCGAGGTGTGGAAAGCGTGCGGCATGAACATGGATA
ACGTGAAGTTCCTGTGGGCGTCGGACGAAATCAACAGGCGGTCCGACGAG
TACTGGACGAGGGTGATGGACATTGCGCGCTTGAACAGCGTGTCGCGCGT
GAAGCGGTGCTGCACAATCATGGGGCGCGGCGACGGCGACGAGCTGTCAG
CGGCGCAAATCATGTACCCTTGCATGCAGTGCGCGGACATCTTCTTCCTC
AAGGCGGACATATGCCAGTTGGGCATGGACCAGCGAAAGGTGAATATGCT
TGCGAGGGAGTACTGTGATCAGAGCACGCCCAAGATAAAGAACAAGCCGA
TCATTCTGTCGCATCACATGATGCCCGGCCTGAAGCAGGGGCAGGCGAAG
ATGAGCAAGAGCGATCCGTCGAGCGCCATTTACATGGAGGACTCGGTGCA
AGAGGTGAACAGCAAGATCAAGGGGGCTTTCTGCCCGGAGCAGCAGGTGG
AGGACAACCCGGTGCTGGAGTACGTCAAGTACCTGGTGTTCCCCAAGCTG
GGGCGGGTGAGCGTGAAGCGAAGCGAGGCCAACGGCGGCGACAAGACGTA
CAGCTCGTACGCGCAGCTGGAAGCGGAGTTTGGCAGCGGGGCGCTGCACC
CCGGCGACCTAAAGCCGGCGCTAGCGCGGGCGCTCAACGAGATGCTGCAG
CCGGTGCGCGACCATTTCAAGACGGACGCGCATGCGAGGAAGTTGCTGGC
GCAGGTCAAGCGCTACAAGACGACCAAGTAA
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protein sequence of Gvermi12887.t1

>Gvermi12887.t1 ID=Gvermi12887.t1|Name=Gvermi12887.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=377bp
MSEQAAGVAPSQSADRADAKLVNGMTIDERVQLIMSVGEECHTEEGLRLL
LEKKPGPPVCYDGFEPSGRMHIAQGIQKSINVNKLTEGGCHFVFWVADWF
AQLNNKMGGDLKKIRVVGEYFIEVWKACGMNMDNVKFLWASDEINRRSDE
YWTRVMDIARLNSVSRVKRCCTIMGRGDGDELSAAQIMYPCMQCADIFFL
KADICQLGMDQRKVNMLAREYCDQSTPKIKNKPIILSHHMMPGLKQGQAK
MSKSDPSSAIYMEDSVQEVNSKIKGAFCPEQQVEDNPVLEYVKYLVFPKL
GRVSVKRSEANGGDKTYSSYAQLEAEFGSGALHPGDLKPALARALNEMLQ
PVRDHFKTDAHARKLLAQVKRYKTTK*
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mRNA from alignment at ScGOVlb_425:1935371..1936501+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12887.t1 ID=Gvermi12887.t1|Name=Gvermi12887.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1131bp|location=Sequence derived from alignment at ScGOVlb_425:1935371..1936501+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGGAACAGGCTGCGGGCGTGGCGCCCTCGCAGAGCGCAGACAGGGC
CGACGCCAAGCTCGTGAATGGGATGACAATCGACGAGCGCGTGCAACTGA
TCATGTCCGTCGGAGAGGAGTGCCACACGGAGGAAGGGTTGCGGCTGCTG
CTGGAGAAGAAGCCGGGGCCGCCGGTGTGCTACGACGGGTTTGAGCCGTC
AGGGCGAATGCACATCGCGCAGGGCATTCAAAAGTCCATCAACGTGAACA
AGCTGACGGAAGGCGGGTGCCACTTTGTGTTCTGGGTGGCGGACTGGTTT
GCACAGCTCAACAACAAGATGGGCGGCGACCTCAAGAAGATCCGTGTGGT
GGGCGAGTACTTTATCGAGGTGTGGAAAGCGTGCGGCATGAACATGGATA
ACGTGAAGTTCCTGTGGGCGTCGGACGAAATCAACAGGCGGTCCGACGAG
TACTGGACGAGGGTGATGGACATTGCGCGCTTGAACAGCGTGTCGCGCGT
GAAGCGGTGCTGCACAATCATGGGGCGCGGCGACGGCGACGAGCTGTCAG
CGGCGCAAATCATGTACCCTTGCATGCAGTGCGCGGACATCTTCTTCCTC
AAGGCGGACATATGCCAGTTGGGCATGGACCAGCGAAAGGTGAATATGCT
TGCGAGGGAGTACTGTGATCAGAGCACGCCCAAGATAAAGAACAAGCCGA
TCATTCTGTCGCATCACATGATGCCCGGCCTGAAGCAGGGGCAGGCGAAG
ATGAGCAAGAGCGATCCGTCGAGCGCCATTTACATGGAGGACTCGGTGCA
AGAGGTGAACAGCAAGATCAAGGGGGCTTTCTGCCCGGAGCAGCAGGTGG
AGGACAACCCGGTGCTGGAGTACGTCAAGTACCTGGTGTTCCCCAAGCTG
GGGCGGGTGAGCGTGAAGCGAAGCGAGGCCAACGGCGGCGACAAGACGTA
CAGCTCGTACGCGCAGCTGGAAGCGGAGTTTGGCAGCGGGGCGCTGCACC
CCGGCGACCTAAAGCCGGCGCTAGCGCGGGCGCTCAACGAGATGCTGCAG
CCGGTGCGCGACCATTTCAAGACGGACGCGCATGCGAGGAAGTTGCTGGC
GCAGGTCAAGCGCTACAAGACGACCAAGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1935371..1936501+

>Gvermi12887.t1 ID=Gvermi12887.t1|Name=Gvermi12887.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1131bp|location=Sequence derived from alignment at ScGOVlb_425:1935371..1936501+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGGAACAGGCTGCGGGCGTGGCGCCCTCGCAGAGCGCAGACAGGGC
CGACGCCAAGCTCGTGAATGGGATGACAATCGACGAGCGCGTGCAACTGA
TCATGTCCGTCGGAGAGGAGTGCCACACGGAGGAAGGGTTGCGGCTGCTG
CTGGAGAAGAAGCCGGGGCCGCCGGTGTGCTACGACGGGTTTGAGCCGTC
AGGGCGAATGCACATCGCGCAGGGCATTCAAAAGTCCATCAACGTGAACA
AGCTGACGGAAGGCGGGTGCCACTTTGTGTTCTGGGTGGCGGACTGGTTT
GCACAGCTCAACAACAAGATGGGCGGCGACCTCAAGAAGATCCGTGTGGT
GGGCGAGTACTTTATCGAGGTGTGGAAAGCGTGCGGCATGAACATGGATA
ACGTGAAGTTCCTGTGGGCGTCGGACGAAATCAACAGGCGGTCCGACGAG
TACTGGACGAGGGTGATGGACATTGCGCGCTTGAACAGCGTGTCGCGCGT
GAAGCGGTGCTGCACAATCATGGGGCGCGGCGACGGCGACGAGCTGTCAG
CGGCGCAAATCATGTACCCTTGCATGCAGTGCGCGGACATCTTCTTCCTC
AAGGCGGACATATGCCAGTTGGGCATGGACCAGCGAAAGGTGAATATGCT
TGCGAGGGAGTACTGTGATCAGAGCACGCCCAAGATAAAGAACAAGCCGA
TCATTCTGTCGCATCACATGATGCCCGGCCTGAAGCAGGGGCAGGCGAAG
ATGAGCAAGAGCGATCCGTCGAGCGCCATTTACATGGAGGACTCGGTGCA
AGAGGTGAACAGCAAGATCAAGGGGGCTTTCTGCCCGGAGCAGCAGGTGG
AGGACAACCCGGTGCTGGAGTACGTCAAGTACCTGGTGTTCCCCAAGCTG
GGGCGGGTGAGCGTGAAGCGAAGCGAGGCCAACGGCGGCGACAAGACGTA
CAGCTCGTACGCGCAGCTGGAAGCGGAGTTTGGCAGCGGGGCGCTGCACC
CCGGCGACCTAAAGCCGGCGCTAGCGCGGGCGCTCAACGAGATGCTGCAG
CCGGTGCGCGACCATTTCAAGACGGACGCGCATGCGAGGAAGTTGCTGGC
GCAGGTCAAGCGCTACAAGACGACCAAGTAA
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