Gvermi12881.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12881.t1
Unique NameGvermi12881.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length229
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1913983..1914669 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707410.1
PFAMsDUF218
Max annot lvl2759|Eukaryota
Evalue4.8e-57
EggNOG OGs2C8MV@1|root,2S34S@2759|Eukaryota
DescriptionDUF218 domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12881Gvermi12881Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1913983..1914669 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12881.t1.start1Gvermi12881.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1913983..1913985 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12881.t1.CDS1Gvermi12881.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1913983..1914669 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12881.t1.exon1Gvermi12881.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1913983..1914669 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12881.t1.stop1Gvermi12881.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1914667..1914669 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12881.t1Gvermi12881.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1913983..1914669 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12881.t1 ID=Gvermi12881.t1|Name=Gvermi12881.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=229bp
METEGSRRYDAIVIPGGGLEPKTALPQPWVRARLDAALRLRHQTKYFIVL
SRGTTHKPPPRDTAGYCIDEATASAKYLLDNGIRDAERILMDRWSFDTIG
NAYFARAMICEPMKLRHICVITSMFHMPRTRAIFEWVFSLDGCLSKMDYV
ATEDIGMSPEQSAVRTEKEQQSLRKLTASTIPNFRSMEQLAEFVLVGHGA
YNSQSVQKIVPACLPDESEESKGLVSTY*
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spliced messenger RNA

>Gvermi12881.t1 ID=Gvermi12881.t1|Name=Gvermi12881.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=687bp|location=Sequence derived from alignment at ScGOVlb_425:1913983..1914669+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAACCGAAGGTTCCCGGAGATATGACGCCATTGTGATTCCAGGCGG
CGGATTGGAGCCAAAAACTGCCCTTCCCCAGCCATGGGTAAGAGCCCGTC
TCGACGCCGCCTTGAGACTTCGTCACCAAACCAAGTACTTCATTGTGCTT
TCACGCGGCACAACACACAAACCACCCCCGCGCGATACGGCGGGCTATTG
CATTGACGAAGCTACAGCCAGTGCGAAATACTTGTTAGATAACGGAATCA
GAGACGCTGAGAGAATTTTGATGGACAGGTGGTCTTTCGACACGATTGGT
AATGCCTACTTCGCACGCGCCATGATATGCGAGCCGATGAAGCTCAGGCA
CATATGTGTAATAACAAGCATGTTTCACATGCCCCGGACGCGAGCAATCT
TCGAATGGGTTTTTTCTTTGGATGGGTGTCTCTCAAAGATGGATTATGTC
GCCACAGAGGACATAGGCATGTCGCCCGAGCAGAGTGCTGTCCGCACTGA
GAAAGAGCAGCAAAGCTTGCGAAAACTAACGGCGTCCACGATACCAAACT
TCCGGAGCATGGAACAGCTCGCGGAGTTTGTCCTTGTCGGTCATGGTGCA
TACAATTCACAGTCTGTGCAGAAAATCGTCCCAGCCTGCTTGCCTGACGA
AAGCGAGGAAAGCAAAGGATTGGTGAGCACCTACTGA
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protein sequence of Gvermi12881.t1

>Gvermi12881.t1 ID=Gvermi12881.t1|Name=Gvermi12881.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=229bp
METEGSRRYDAIVIPGGGLEPKTALPQPWVRARLDAALRLRHQTKYFIVL
SRGTTHKPPPRDTAGYCIDEATASAKYLLDNGIRDAERILMDRWSFDTIG
NAYFARAMICEPMKLRHICVITSMFHMPRTRAIFEWVFSLDGCLSKMDYV
ATEDIGMSPEQSAVRTEKEQQSLRKLTASTIPNFRSMEQLAEFVLVGHGA
YNSQSVQKIVPACLPDESEESKGLVSTY*
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mRNA from alignment at ScGOVlb_425:1913983..1914669+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12881.t1 ID=Gvermi12881.t1|Name=Gvermi12881.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=687bp|location=Sequence derived from alignment at ScGOVlb_425:1913983..1914669+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAAACCGAAGGTTCCCGGAGATATGACGCCATTGTGATTCCAGGCGG
CGGATTGGAGCCAAAAACTGCCCTTCCCCAGCCATGGGTAAGAGCCCGTC
TCGACGCCGCCTTGAGACTTCGTCACCAAACCAAGTACTTCATTGTGCTT
TCACGCGGCACAACACACAAACCACCCCCGCGCGATACGGCGGGCTATTG
CATTGACGAAGCTACAGCCAGTGCGAAATACTTGTTAGATAACGGAATCA
GAGACGCTGAGAGAATTTTGATGGACAGGTGGTCTTTCGACACGATTGGT
AATGCCTACTTCGCACGCGCCATGATATGCGAGCCGATGAAGCTCAGGCA
CATATGTGTAATAACAAGCATGTTTCACATGCCCCGGACGCGAGCAATCT
TCGAATGGGTTTTTTCTTTGGATGGGTGTCTCTCAAAGATGGATTATGTC
GCCACAGAGGACATAGGCATGTCGCCCGAGCAGAGTGCTGTCCGCACTGA
GAAAGAGCAGCAAAGCTTGCGAAAACTAACGGCGTCCACGATACCAAACT
TCCGGAGCATGGAACAGCTCGCGGAGTTTGTCCTTGTCGGTCATGGTGCA
TACAATTCACAGTCTGTGCAGAAAATCGTCCCAGCCTGCTTGCCTGACGA
AAGCGAGGAAAGCAAAGGATTGGTGAGCACCTACTGA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1913983..1914669+

>Gvermi12881.t1 ID=Gvermi12881.t1|Name=Gvermi12881.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=687bp|location=Sequence derived from alignment at ScGOVlb_425:1913983..1914669+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAAACCGAAGGTTCCCGGAGATATGACGCCATTGTGATTCCAGGCGG
CGGATTGGAGCCAAAAACTGCCCTTCCCCAGCCATGGGTAAGAGCCCGTC
TCGACGCCGCCTTGAGACTTCGTCACCAAACCAAGTACTTCATTGTGCTT
TCACGCGGCACAACACACAAACCACCCCCGCGCGATACGGCGGGCTATTG
CATTGACGAAGCTACAGCCAGTGCGAAATACTTGTTAGATAACGGAATCA
GAGACGCTGAGAGAATTTTGATGGACAGGTGGTCTTTCGACACGATTGGT
AATGCCTACTTCGCACGCGCCATGATATGCGAGCCGATGAAGCTCAGGCA
CATATGTGTAATAACAAGCATGTTTCACATGCCCCGGACGCGAGCAATCT
TCGAATGGGTTTTTTCTTTGGATGGGTGTCTCTCAAAGATGGATTATGTC
GCCACAGAGGACATAGGCATGTCGCCCGAGCAGAGTGCTGTCCGCACTGA
GAAAGAGCAGCAAAGCTTGCGAAAACTAACGGCGTCCACGATACCAAACT
TCCGGAGCATGGAACAGCTCGCGGAGTTTGTCCTTGTCGGTCATGGTGCA
TACAATTCACAGTCTGTGCAGAAAATCGTCCCAGCCTGCTTGCCTGACGA
AAGCGAGGAAAGCAAAGGATTGGTGAGCACCTACTGA
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