Gvermi12871.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12871.t1
Unique NameGvermi12871.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length256
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1865552..1866442 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707149.1
Preferred namePSMA7
PFAMsProteasome,Proteasome_A_N
Max annot lvl2759|Eukaryota
KEGG koko:K01191,ko:K02731
KEGG Pathwayko00511,ko03050,map00511,map03050
KEGG ModuleM00337,M00340
GOsGO:0000502,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005773,GO:0005774,GO:0005819,GO:0005829,GO:0005839,GO:0005840,GO:0005856,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007088,GO:0007346,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009507,GO:0009524,GO:0009536,GO:0009896,GO:0009987,GO:0010498,GO:0010499,GO:0010564,GO:0010638,GO:0010965,GO:0012505,GO:0015630,GO:0016020,GO:0016579,GO:0019538,GO:0019773,GO:0019941,GO:0022626,GO:0030071,GO:0030163,GO:0031090,GO:0031331,GO:0031597,GO:0031974,GO:0031981,GO:0032270,GO:0032436,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034399,GO:0034515,GO:0036211,GO:0042175,GO:0042802,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044456,GO:0044464,GO:0045202,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051247,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0062033,GO:0065007,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0090068,GO:0098588,GO:0098794,GO:0098805,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:1990111,GO:1990904,GO:2001252
Evalue2.09e-122
EggNOG OGsCOG0638@1|root,KOG0183@2759|Eukaryota
EC3.2.1.24,3.4.25.1
Descriptionthreonine-type endopeptidase activity
COG categoryO
CAZyGH38
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03051,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12871Gvermi12871Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1865552..1866442 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12871.t1Gvermi12871.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1865552..1866442 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12871.t1.start1Gvermi12871.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1865552..1865554 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12871.t1.CDS1Gvermi12871.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1865552..1865650 +
Gvermi12871.t1.CDS2Gvermi12871.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1865774..1866442 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12871.t1.exon1Gvermi12871.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1865552..1865650 +
Gvermi12871.t1.exon2Gvermi12871.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1865774..1866442 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12871.t1.intron1Gvermi12871.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 1865651..1865773 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12871.t1.stop1Gvermi12871.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1866440..1866442 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12871.t1 ID=Gvermi12871.t1|Name=Gvermi12871.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=256bp
MSRYDRAITVFSPDGHLFQVEYALEAVRKGSTAVGIRGDNVIVLAVEKKS
TAKLQDARTVRKTARIDERICLAFAGLTADARVLINKARKECQSYRLMVE
DAPSVDYISRHIATTQQRYTQSGGVRPFGISTLIIGFDSDGTPRLFQTDP
SGLFSEWKANAIGRNSKTVLEFLEKKYKECVVDVPKENADDETIKLAIKA
MLEVVESSHKNIEVTVMYRDSGVKVLAEKEVEALVTAVETEKTEAEEKKK
PSSRT*
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spliced messenger RNA

>Gvermi12871.t1 ID=Gvermi12871.t1|Name=Gvermi12871.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=768bp|location=Sequence derived from alignment at ScGOVlb_425:1865552..1866442+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTCGCTACGATCGAGCGATTACGGTGTTCTCCCCCGATGGGCATCT
GTTCCAAGTCGAATATGCTTTGGAAGCCGTACGGAAAGGATCCACTGCGG
TTGGAATTCGGGGAGATAATGTGATTGTCCTGGCTGTGGAAAAAAAGAGT
ACAGCGAAGCTCCAAGATGCGCGTACTGTGCGCAAGACGGCGCGTATTGA
CGAACGTATTTGTCTGGCCTTTGCTGGTTTAACGGCGGACGCCCGAGTAC
TTATCAACAAGGCTAGAAAAGAATGTCAAAGTTACCGTCTTATGGTTGAA
GATGCTCCTAGCGTTGATTACATTTCTCGCCACATTGCCACCACTCAACA
AAGATATACGCAGAGCGGAGGAGTACGTCCTTTTGGAATTAGTACTTTGA
TCATCGGTTTTGATTCAGACGGAACACCACGTCTTTTCCAAACAGATCCC
TCAGGTCTATTCTCAGAATGGAAAGCGAACGCAATTGGCCGAAACTCCAA
GACCGTGCTAGAATTCTTGGAGAAGAAGTACAAAGAGTGTGTCGTTGATG
TGCCCAAAGAAAATGCTGATGATGAGACCATCAAATTGGCCATCAAGGCC
ATGTTGGAAGTTGTGGAGAGTTCACACAAAAACATCGAAGTTACGGTGAT
GTATCGAGATTCCGGTGTAAAGGTTTTAGCGGAAAAAGAGGTTGAGGCTT
TAGTAACTGCTGTAGAAACCGAAAAGACAGAAGCCGAAGAAAAGAAGAAA
CCATCGTCGAGGACGTAA
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protein sequence of Gvermi12871.t1

>Gvermi12871.t1 ID=Gvermi12871.t1|Name=Gvermi12871.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=256bp
MSRYDRAITVFSPDGHLFQVEYALEAVRKGSTAVGIRGDNVIVLAVEKKS
TAKLQDARTVRKTARIDERICLAFAGLTADARVLINKARKECQSYRLMVE
DAPSVDYISRHIATTQQRYTQSGGVRPFGISTLIIGFDSDGTPRLFQTDP
SGLFSEWKANAIGRNSKTVLEFLEKKYKECVVDVPKENADDETIKLAIKA
MLEVVESSHKNIEVTVMYRDSGVKVLAEKEVEALVTAVETEKTEAEEKKK
PSSRT*
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mRNA from alignment at ScGOVlb_425:1865552..1866442+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12871.t1 ID=Gvermi12871.t1|Name=Gvermi12871.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=891bp|location=Sequence derived from alignment at ScGOVlb_425:1865552..1866442+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGTCGCTACGATCGAGCGATTACGGTGTTCTCCCCCGATGGGCATCT
GTTCCAAGTCGAATATGCTTTGGAAGCCGTACGGAAAGGATCCACTGCGG
TAAGTCAAAGCACTGCATTTTTTTCCTCAGTACGCGTCTGGGACCTGGTC
TAACACCTGCAGACTCGCTTTCATAATGCCGGAATCATCTTTTGTTTACC
GTAACTCTCTGGTATTGTATAGGTTGGAATTCGGGGAGATAATGTGATTG
TCCTGGCTGTGGAAAAAAAGAGTACAGCGAAGCTCCAAGATGCGCGTACT
GTGCGCAAGACGGCGCGTATTGACGAACGTATTTGTCTGGCCTTTGCTGG
TTTAACGGCGGACGCCCGAGTACTTATCAACAAGGCTAGAAAAGAATGTC
AAAGTTACCGTCTTATGGTTGAAGATGCTCCTAGCGTTGATTACATTTCT
CGCCACATTGCCACCACTCAACAAAGATATACGCAGAGCGGAGGAGTACG
TCCTTTTGGAATTAGTACTTTGATCATCGGTTTTGATTCAGACGGAACAC
CACGTCTTTTCCAAACAGATCCCTCAGGTCTATTCTCAGAATGGAAAGCG
AACGCAATTGGCCGAAACTCCAAGACCGTGCTAGAATTCTTGGAGAAGAA
GTACAAAGAGTGTGTCGTTGATGTGCCCAAAGAAAATGCTGATGATGAGA
CCATCAAATTGGCCATCAAGGCCATGTTGGAAGTTGTGGAGAGTTCACAC
AAAAACATCGAAGTTACGGTGATGTATCGAGATTCCGGTGTAAAGGTTTT
AGCGGAAAAAGAGGTTGAGGCTTTAGTAACTGCTGTAGAAACCGAAAAGA
CAGAAGCCGAAGAAAAGAAGAAACCATCGTCGAGGACGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1865552..1866442+

>Gvermi12871.t1 ID=Gvermi12871.t1|Name=Gvermi12871.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=768bp|location=Sequence derived from alignment at ScGOVlb_425:1865552..1866442+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGTCGCTACGATCGAGCGATTACGGTGTTCTCCCCCGATGGGCATCT
GTTCCAAGTCGAATATGCTTTGGAAGCCGTACGGAAAGGATCCACTGCGG
TTGGAATTCGGGGAGATAATGTGATTGTCCTGGCTGTGGAAAAAAAGAGT
ACAGCGAAGCTCCAAGATGCGCGTACTGTGCGCAAGACGGCGCGTATTGA
CGAACGTATTTGTCTGGCCTTTGCTGGTTTAACGGCGGACGCCCGAGTAC
TTATCAACAAGGCTAGAAAAGAATGTCAAAGTTACCGTCTTATGGTTGAA
GATGCTCCTAGCGTTGATTACATTTCTCGCCACATTGCCACCACTCAACA
AAGATATACGCAGAGCGGAGGAGTACGTCCTTTTGGAATTAGTACTTTGA
TCATCGGTTTTGATTCAGACGGAACACCACGTCTTTTCCAAACAGATCCC
TCAGGTCTATTCTCAGAATGGAAAGCGAACGCAATTGGCCGAAACTCCAA
GACCGTGCTAGAATTCTTGGAGAAGAAGTACAAAGAGTGTGTCGTTGATG
TGCCCAAAGAAAATGCTGATGATGAGACCATCAAATTGGCCATCAAGGCC
ATGTTGGAAGTTGTGGAGAGTTCACACAAAAACATCGAAGTTACGGTGAT
GTATCGAGATTCCGGTGTAAAGGTTTTAGCGGAAAAAGAGGTTGAGGCTT
TAGTAACTGCTGTAGAAACCGAAAAGACAGAAGCCGAAGAAAAGAAGAAA
CCATCGTCGAGGACGTAA
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