Gvermi12862.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12862.t1
Unique Name	Gvermi12862.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	623

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_425	contig	ScGOVlb_425:1830008..1831876 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	42345.XP_008793065.1
Preferred name	DDX41
PFAMs	DEAD,Helicase_C
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K13116
GOs	GO:0000375,GO:0000377,GO:0000398,GO:0001817,GO:0001819,GO:0002252,GO:0002376,GO:0003674,GO:0003676,GO:0003677,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005730,GO:0005737,GO:0005783,GO:0005829,GO:0006139,GO:0006355,GO:0006357,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006915,GO:0006950,GO:0006952,GO:0008026,GO:0008104,GO:0008150,GO:0008152,GO:0008186,GO:0008219,GO:0008283,GO:0008380,GO:0009605,GO:0009607,GO:0009615,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010501,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0012501,GO:0012505,GO:0016070,GO:0016071,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0030154,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032479,GO:0032481,GO:0032502,GO:0032991,GO:0033036,GO:0034097,GO:0034641,GO:0035456,GO:0035458,GO:0035770,GO:0036464,GO:0042221,GO:0042623,GO:0043170,GO:0043186,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045495,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048522,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051179,GO:0051239,GO:0051240,GO:0051252,GO:0051254,GO:0051607,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0060293,GO:0065007,GO:0070013,GO:0070035,GO:0070887,GO:0071013,GO:0071310,GO:0071345,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0098542,GO:0140098,GO:1901360,GO:1901363,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1990904,GO:2000112,GO:2001141
Evalue	2.15e-213
EggNOG OGs	KOG0341@1\|root,KOG0341@2759\|Eukaryota,37HIW@33090\|Viridiplantae,3G71W@35493\|Streptophyta,3KTTQ@4447\|Liliopsida
EC	3.6.4.13
Description	DEAD-box ATP-dependent RNA helicase
COG category	A
BRITE	ko00000,ko01000,ko03041

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12862	Gvermi12862	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_425 1830008..1831876 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12862.t1.start1	Gvermi12862.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_425 1830008..1830010 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12862.t1.CDS1	Gvermi12862.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_425 1830008..1831876 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12862.t1.exon1	Gvermi12862.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_425 1830008..1831876 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12862.t1.stop1	Gvermi12862.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_425 1831874..1831876 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12862.t1	Gvermi12862.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_425 1830008..1831876 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_425:1830008..1831876+
coding sequence from alignment at ScGOVlb_425:1830008..1831876+

mRNA sequence

>Gvermi12862.t1 ID=Gvermi12862.t1|Name=Gvermi12862.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=623bp
MTASDDDHYVEYVPLKRRRAHAASSAARLASRTGSKSLLRAAQSALRAAA
QPRPAPLPPLPHHDPPPSSAPRPASPPARRSLLDHVARLQSAGLPPKTEE
QKVQESEAHVLAQLSRQPALKAVAELAHGVEYTEPMTTSWAPPRYLQRAG
EHHHSHMRQLHRIMVEGDDIPPPCVSFAEMKLPKPVLHHLSRSNIQNPSP
IQMQGLPVALSGRDMIGIAFTGSGKTLVFTLPLIMLAWEMELRLPFISNE
GPVGMILAPSRELARQTFDIADQFCRTIHRHGAPQLRPFLAIGGTRVDFD
AIRRGIHILVATPGRLLDLLRKRRINLDVCRYVALDEADRLIDLGFEEDI
RAIFSFFTAQRQTLMFSATMPTKIQAFASSALVKPVVVNVGRAGAASLNI
TQHVDVVRPDARISRLLDTLQKTPPPTLIFCENKNDVDDIHEYLLIKGVG
AVSIHGGRDQEDREASMRQFRAGSKDVLVATDVAAKGLDFPNIRHVINYD
MPKDIQTYVHRIGRTGRGEQTGTATTFINHSDSSTLIADLVQLLIEAKQK
VPESLYEIVPDLELNGLANQEVGGVKGCAYCGGLGHRVQECPTLESEKMK
ALVGGTKGGMERFNRGGYGSEW*

spliced messenger RNA

>Gvermi12862.t1 ID=Gvermi12862.t1|Name=Gvermi12862.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1869bp|location=Sequence derived from alignment at ScGOVlb_425:1830008..1831876+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGCCTCTGACGATGACCACTACGTCGAGTACGTCCCGCTCAAGCG
CCGCCGCGCGCACGCCGCCTCCAGCGCCGCCCGCCTCGCCTCGCGCACCG
GCTCCAAATCGCTGCTACGCGCCGCCCAGTCCGCCCTCCGCGCCGCCGCC
CAGCCGCGCCCTGCGCCGCTGCCGCCGCTGCCCCATCACGACCCACCCCC
ATCCTCTGCCCCCCGCCCCGCGTCCCCGCCCGCGCGCCGCTCCCTCCTCG
ACCACGTCGCCCGCCTGCAGTCCGCCGGCCTCCCCCCCAAGACAGAGGAG
CAGAAGGTCCAGGAATCCGAAGCCCATGTGCTGGCGCAGCTTTCCCGCCA
GCCGGCCCTCAAGGCCGTCGCCGAGCTCGCGCATGGCGTCGAGTACACCG
AGCCCATGACCACGTCCTGGGCCCCCCCCCGCTACTTGCAGCGCGCCGGC
GAGCACCACCACTCGCACATGCGCCAACTCCACCGCATCATGGTCGAGGG
CGACGACATACCCCCCCCGTGCGTGTCCTTCGCAGAGATGAAGCTGCCTA
AGCCCGTCCTGCACCACCTCAGCCGCAGCAACATCCAGAACCCCTCGCCC
ATCCAGATGCAGGGGCTCCCGGTCGCTCTCAGCGGACGCGACATGATCGG
CATTGCCTTCACCGGCTCAGGGAAAACGCTTGTTTTCACACTCCCGCTCA
TCATGCTCGCGTGGGAAATGGAGCTCCGCCTCCCCTTTATTTCCAACGAA
GGGCCCGTGGGTATGATTCTCGCCCCCTCCCGCGAGCTCGCCCGTCAGAC
CTTTGACATTGCCGACCAGTTCTGTCGCACCATACACCGCCACGGTGCGC
CTCAGCTTCGCCCCTTTCTGGCCATCGGCGGCACTCGCGTGGACTTTGAC
GCCATTCGAAGGGGAATACACATCCTGGTTGCCACGCCCGGCCGCCTGCT
GGACCTTCTCCGCAAGCGCAGGATCAACCTCGACGTCTGTCGATACGTGG
CCTTGGATGAGGCTGATCGCCTCATAGATCTCGGCTTTGAGGAGGACATC
AGAGCAATATTCAGTTTCTTTACGGCGCAGAGGCAGACGCTCATGTTTTC
TGCCACCATGCCCACCAAGATCCAGGCGTTTGCGTCTTCCGCTCTGGTCA
AGCCCGTTGTGGTCAACGTGGGCAGAGCCGGAGCTGCATCCCTCAACATC
ACCCAGCACGTTGACGTCGTTCGCCCGGATGCGCGCATATCTCGTTTGCT
GGACACGCTGCAAAAGACACCGCCGCCGACTCTCATTTTCTGCGAGAACA
AGAATGATGTCGACGACATTCACGAGTACTTGCTCATCAAGGGCGTCGGT
GCCGTGTCCATTCATGGTGGCCGCGACCAGGAGGACAGGGAAGCCTCAAT
GCGTCAGTTCCGCGCCGGCTCCAAGGACGTTCTGGTGGCCACAGACGTTG
CTGCAAAAGGGCTCGACTTTCCGAATATTCGACATGTCATCAATTATGAT
ATGCCCAAGGACATTCAGACATACGTCCATCGAATTGGCCGAACGGGACG
CGGCGAACAGACGGGTACAGCCACTACATTTATCAATCATTCCGATAGTT
CTACTCTCATTGCTGATTTGGTGCAACTGCTCATCGAGGCAAAGCAGAAA
GTCCCAGAGAGTTTGTACGAAATTGTCCCCGACCTTGAGCTGAATGGGCT
CGCAAACCAGGAAGTTGGTGGGGTCAAGGGTTGTGCCTATTGTGGGGGGC
TTGGCCATCGCGTGCAAGAATGTCCGACGCTGGAATCGGAGAAAATGAAG
GCGTTGGTTGGTGGCACGAAGGGCGGCATGGAACGTTTTAACCGGGGTGG
TTATGGAAGCGAGTGGTAA

protein sequence of Gvermi12862.t1

>Gvermi12862.t1 ID=Gvermi12862.t1|Name=Gvermi12862.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=623bp
MTASDDDHYVEYVPLKRRRAHAASSAARLASRTGSKSLLRAAQSALRAAA
QPRPAPLPPLPHHDPPPSSAPRPASPPARRSLLDHVARLQSAGLPPKTEE
QKVQESEAHVLAQLSRQPALKAVAELAHGVEYTEPMTTSWAPPRYLQRAG
EHHHSHMRQLHRIMVEGDDIPPPCVSFAEMKLPKPVLHHLSRSNIQNPSP
IQMQGLPVALSGRDMIGIAFTGSGKTLVFTLPLIMLAWEMELRLPFISNE
GPVGMILAPSRELARQTFDIADQFCRTIHRHGAPQLRPFLAIGGTRVDFD
AIRRGIHILVATPGRLLDLLRKRRINLDVCRYVALDEADRLIDLGFEEDI
RAIFSFFTAQRQTLMFSATMPTKIQAFASSALVKPVVVNVGRAGAASLNI
TQHVDVVRPDARISRLLDTLQKTPPPTLIFCENKNDVDDIHEYLLIKGVG
AVSIHGGRDQEDREASMRQFRAGSKDVLVATDVAAKGLDFPNIRHVINYD
MPKDIQTYVHRIGRTGRGEQTGTATTFINHSDSSTLIADLVQLLIEAKQK
VPESLYEIVPDLELNGLANQEVGGVKGCAYCGGLGHRVQECPTLESEKMK
ALVGGTKGGMERFNRGGYGSEW*

mRNA from alignment at ScGOVlb_425:1830008..1831876+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12862.t1 ID=Gvermi12862.t1|Name=Gvermi12862.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1869bp|location=Sequence derived from alignment at ScGOVlb_425:1830008..1831876+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACCGCCTCTGACGATGACCACTACGTCGAGTACGTCCCGCTCAAGCG
CCGCCGCGCGCACGCCGCCTCCAGCGCCGCCCGCCTCGCCTCGCGCACCG
GCTCCAAATCGCTGCTACGCGCCGCCCAGTCCGCCCTCCGCGCCGCCGCC
CAGCCGCGCCCTGCGCCGCTGCCGCCGCTGCCCCATCACGACCCACCCCC
ATCCTCTGCCCCCCGCCCCGCGTCCCCGCCCGCGCGCCGCTCCCTCCTCG
ACCACGTCGCCCGCCTGCAGTCCGCCGGCCTCCCCCCCAAGACAGAGGAG
CAGAAGGTCCAGGAATCCGAAGCCCATGTGCTGGCGCAGCTTTCCCGCCA
GCCGGCCCTCAAGGCCGTCGCCGAGCTCGCGCATGGCGTCGAGTACACCG
AGCCCATGACCACGTCCTGGGCCCCCCCCCGCTACTTGCAGCGCGCCGGC
GAGCACCACCACTCGCACATGCGCCAACTCCACCGCATCATGGTCGAGGG
CGACGACATACCCCCCCCGTGCGTGTCCTTCGCAGAGATGAAGCTGCCTA
AGCCCGTCCTGCACCACCTCAGCCGCAGCAACATCCAGAACCCCTCGCCC
ATCCAGATGCAGGGGCTCCCGGTCGCTCTCAGCGGACGCGACATGATCGG
CATTGCCTTCACCGGCTCAGGGAAAACGCTTGTTTTCACACTCCCGCTCA
TCATGCTCGCGTGGGAAATGGAGCTCCGCCTCCCCTTTATTTCCAACGAA
GGGCCCGTGGGTATGATTCTCGCCCCCTCCCGCGAGCTCGCCCGTCAGAC
CTTTGACATTGCCGACCAGTTCTGTCGCACCATACACCGCCACGGTGCGC
CTCAGCTTCGCCCCTTTCTGGCCATCGGCGGCACTCGCGTGGACTTTGAC
GCCATTCGAAGGGGAATACACATCCTGGTTGCCACGCCCGGCCGCCTGCT
GGACCTTCTCCGCAAGCGCAGGATCAACCTCGACGTCTGTCGATACGTGG
CCTTGGATGAGGCTGATCGCCTCATAGATCTCGGCTTTGAGGAGGACATC
AGAGCAATATTCAGTTTCTTTACGGCGCAGAGGCAGACGCTCATGTTTTC
TGCCACCATGCCCACCAAGATCCAGGCGTTTGCGTCTTCCGCTCTGGTCA
AGCCCGTTGTGGTCAACGTGGGCAGAGCCGGAGCTGCATCCCTCAACATC
ACCCAGCACGTTGACGTCGTTCGCCCGGATGCGCGCATATCTCGTTTGCT
GGACACGCTGCAAAAGACACCGCCGCCGACTCTCATTTTCTGCGAGAACA
AGAATGATGTCGACGACATTCACGAGTACTTGCTCATCAAGGGCGTCGGT
GCCGTGTCCATTCATGGTGGCCGCGACCAGGAGGACAGGGAAGCCTCAAT
GCGTCAGTTCCGCGCCGGCTCCAAGGACGTTCTGGTGGCCACAGACGTTG
CTGCAAAAGGGCTCGACTTTCCGAATATTCGACATGTCATCAATTATGAT
ATGCCCAAGGACATTCAGACATACGTCCATCGAATTGGCCGAACGGGACG
CGGCGAACAGACGGGTACAGCCACTACATTTATCAATCATTCCGATAGTT
CTACTCTCATTGCTGATTTGGTGCAACTGCTCATCGAGGCAAAGCAGAAA
GTCCCAGAGAGTTTGTACGAAATTGTCCCCGACCTTGAGCTGAATGGGCT
CGCAAACCAGGAAGTTGGTGGGGTCAAGGGTTGTGCCTATTGTGGGGGGC
TTGGCCATCGCGTGCAAGAATGTCCGACGCTGGAATCGGAGAAAATGAAG
GCGTTGGTTGGTGGCACGAAGGGCGGCATGGAACGTTTTAACCGGGGTGG
TTATGGAAGCGAGTGGTAA

Coding sequence (CDS) from alignment at ScGOVlb_425:1830008..1831876+

>Gvermi12862.t1 ID=Gvermi12862.t1|Name=Gvermi12862.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1869bp|location=Sequence derived from alignment at ScGOVlb_425:1830008..1831876+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACCGCCTCTGACGATGACCACTACGTCGAGTACGTCCCGCTCAAGCG
CCGCCGCGCGCACGCCGCCTCCAGCGCCGCCCGCCTCGCCTCGCGCACCG
GCTCCAAATCGCTGCTACGCGCCGCCCAGTCCGCCCTCCGCGCCGCCGCC
CAGCCGCGCCCTGCGCCGCTGCCGCCGCTGCCCCATCACGACCCACCCCC
ATCCTCTGCCCCCCGCCCCGCGTCCCCGCCCGCGCGCCGCTCCCTCCTCG
ACCACGTCGCCCGCCTGCAGTCCGCCGGCCTCCCCCCCAAGACAGAGGAG
CAGAAGGTCCAGGAATCCGAAGCCCATGTGCTGGCGCAGCTTTCCCGCCA
GCCGGCCCTCAAGGCCGTCGCCGAGCTCGCGCATGGCGTCGAGTACACCG
AGCCCATGACCACGTCCTGGGCCCCCCCCCGCTACTTGCAGCGCGCCGGC
GAGCACCACCACTCGCACATGCGCCAACTCCACCGCATCATGGTCGAGGG
CGACGACATACCCCCCCCGTGCGTGTCCTTCGCAGAGATGAAGCTGCCTA
AGCCCGTCCTGCACCACCTCAGCCGCAGCAACATCCAGAACCCCTCGCCC
ATCCAGATGCAGGGGCTCCCGGTCGCTCTCAGCGGACGCGACATGATCGG
CATTGCCTTCACCGGCTCAGGGAAAACGCTTGTTTTCACACTCCCGCTCA
TCATGCTCGCGTGGGAAATGGAGCTCCGCCTCCCCTTTATTTCCAACGAA
GGGCCCGTGGGTATGATTCTCGCCCCCTCCCGCGAGCTCGCCCGTCAGAC
CTTTGACATTGCCGACCAGTTCTGTCGCACCATACACCGCCACGGTGCGC
CTCAGCTTCGCCCCTTTCTGGCCATCGGCGGCACTCGCGTGGACTTTGAC
GCCATTCGAAGGGGAATACACATCCTGGTTGCCACGCCCGGCCGCCTGCT
GGACCTTCTCCGCAAGCGCAGGATCAACCTCGACGTCTGTCGATACGTGG
CCTTGGATGAGGCTGATCGCCTCATAGATCTCGGCTTTGAGGAGGACATC
AGAGCAATATTCAGTTTCTTTACGGCGCAGAGGCAGACGCTCATGTTTTC
TGCCACCATGCCCACCAAGATCCAGGCGTTTGCGTCTTCCGCTCTGGTCA
AGCCCGTTGTGGTCAACGTGGGCAGAGCCGGAGCTGCATCCCTCAACATC
ACCCAGCACGTTGACGTCGTTCGCCCGGATGCGCGCATATCTCGTTTGCT
GGACACGCTGCAAAAGACACCGCCGCCGACTCTCATTTTCTGCGAGAACA
AGAATGATGTCGACGACATTCACGAGTACTTGCTCATCAAGGGCGTCGGT
GCCGTGTCCATTCATGGTGGCCGCGACCAGGAGGACAGGGAAGCCTCAAT
GCGTCAGTTCCGCGCCGGCTCCAAGGACGTTCTGGTGGCCACAGACGTTG
CTGCAAAAGGGCTCGACTTTCCGAATATTCGACATGTCATCAATTATGAT
ATGCCCAAGGACATTCAGACATACGTCCATCGAATTGGCCGAACGGGACG
CGGCGAACAGACGGGTACAGCCACTACATTTATCAATCATTCCGATAGTT
CTACTCTCATTGCTGATTTGGTGCAACTGCTCATCGAGGCAAAGCAGAAA
GTCCCAGAGAGTTTGTACGAAATTGTCCCCGACCTTGAGCTGAATGGGCT
CGCAAACCAGGAAGTTGGTGGGGTCAAGGGTTGTGCCTATTGTGGGGGGC
TTGGCCATCGCGTGCAAGAATGTCCGACGCTGGAATCGGAGAAAATGAAG
GCGTTGGTTGGTGGCACGAAGGGCGGCATGGAACGTTTTAACCGGGGTGG
TTATGGAAGCGAGTGGTAA