Gvermi12849.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12849.t1
Unique Name	Gvermi12849.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	719

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_425	contig	ScGOVlb_425:1794757..1796913 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMT459CT
Preferred name	AAE15
PFAMs	AMP-binding
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00004,RC00014
KEGG ko	ko:K01897
KEGG TC	4.C.1.1
KEGG Reaction	R01280
KEGG Pathway	ko00061,ko00071,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,map00061,map00071,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920
KEGG Module	M00086
GOs	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0008922,GO:0009058,GO:0009507,GO:0009526,GO:0009536,GO:0009941,GO:0009987,GO:0015645,GO:0016053,GO:0016874,GO:0016877,GO:0016878,GO:0019752,GO:0030497,GO:0031967,GO:0031975,GO:0032787,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0071704,GO:0072330,GO:1901576
Evalue	2.08e-170
EggNOG OGs	COG1022@1\|root,KOG1256@2759\|Eukaryota
EC	6.2.1.3
Description	decanoate-CoA ligase activity
COG category	I
BRITE	ko00000,ko00001,ko00002,ko01000,ko01004,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12849	Gvermi12849	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_425 1794757..1796913 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12849.t1.start1	Gvermi12849.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_425 1794757..1794759 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12849.t1.CDS1	Gvermi12849.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_425 1794757..1796913 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12849.t1.exon1	Gvermi12849.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_425 1794757..1796913 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12849.t1.stop1	Gvermi12849.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_425 1796911..1796913 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12849.t1	Gvermi12849.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_425 1794757..1796913 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_425:1794757..1796913+
coding sequence from alignment at ScGOVlb_425:1794757..1796913+

mRNA sequence

>Gvermi12849.t1 ID=Gvermi12849.t1|Name=Gvermi12849.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=719bp
MACVAFQPPCFPPSSSRSRAPRRVCRTRRLRLAVSPLQPPETRVRPQVYP
PNVTPYPRPPGTSGQQALKVRTLQSIPELFLALAEPPTADLTAVVDVHHQ
PNVQLTFAQLAEQINRCTAALRMLGLRPHSNVALFSENSARWCIVDQAIM
SAGAAAAVRGVSAPPHELHFILDHSESKVLFVENVAVLRTMREEGVNFSN
LQFIVLLFGHAQPAKQFVFDVPVYSFEDLISMGANYTRDLVKPLAKRSDI
ATLLYTSGTTGNPKGVVLTHSNLLSQLEDVSLGSFDPSMGEIFLSILPCW
HVFERTAEYWSLSKGMKLVYSNKRHFREDLQEHKPHMLISVPRVFENLYA
AVTQKIKRSSSVRRALFAFFLAVSMAFIGARRRLRKQHIHSKPLNGSFAR
AMCALQMTLLMPLYALANLLIWRKIRAGFGGRLRICLSGGGSLAGHLEDF
FECAGIAICIGYGLTETSPVIANRFGESNVRGSTGMELPRAYVKIVDTET
GVPVPFGQQGRLCVKGPYVFNEYWRNQGATAKAFDTEGYFDTGDLAYRAL
GGDIVISGRAKELIVLSNGENIEPAPIEDVVVASPYIDQLMLVGQDQKAL
GALVVPNLVELELHGLVGEGTSARVQQLLQDEEGNREELRTLEARLMESK
QLMSTLESEIAQRNRQRVAYTGNDRVAHTRLVLIPFTVENGMMTQTLKLK
KNIVADKYAKEIESMYRK*

spliced messenger RNA

>Gvermi12849.t1 ID=Gvermi12849.t1|Name=Gvermi12849.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2157bp|location=Sequence derived from alignment at ScGOVlb_425:1794757..1796913+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTGTGTGGCATTCCAGCCGCCGTGTTTCCCACCGTCCTCGTCGCG
GTCGCGCGCTCCGCGTCGTGTCTGTCGCACGCGGCGGCTGCGTCTCGCCG
TGTCGCCGCTGCAGCCGCCAGAGACGCGCGTACGCCCACAGGTTTACCCG
CCCAACGTCACGCCGTACCCGCGCCCGCCCGGCACCTCCGGCCAACAGGC
GCTTAAGGTGCGCACCCTGCAGAGCATCCCCGAGCTCTTTCTCGCCCTTG
CCGAGCCGCCCACGGCCGACCTCACCGCCGTTGTTGACGTGCATCATCAG
CCCAACGTACAGCTCACGTTTGCGCAGCTCGCAGAGCAGATCAACAGATG
CACTGCCGCTCTGCGCATGCTGGGGCTGCGCCCCCACTCCAATGTCGCCC
TTTTCTCAGAGAATTCCGCCCGCTGGTGCATTGTGGATCAGGCTATCATG
TCTGCAGGCGCTGCCGCCGCTGTGCGCGGCGTTTCCGCGCCCCCTCACGA
GCTACACTTCATCCTGGACCATTCGGAAAGCAAAGTTCTTTTCGTCGAAA
ACGTAGCCGTTCTCAGGACCATGCGCGAGGAAGGCGTAAACTTCTCAAAC
CTGCAATTCATTGTACTGCTGTTTGGTCATGCACAGCCGGCCAAGCAATT
CGTATTTGACGTTCCTGTTTACTCGTTTGAGGACCTCATCAGCATGGGTG
CCAATTACACGCGCGACTTGGTTAAACCGCTGGCGAAACGATCGGACATT
GCAACCTTGCTCTACACGTCGGGCACCACTGGGAACCCGAAAGGTGTCGT
ACTCACGCACTCAAACCTGCTCTCTCAGTTGGAGGATGTTTCGCTGGGAT
CCTTTGATCCGTCCATGGGAGAGATATTCCTCTCCATTCTGCCGTGTTGG
CACGTGTTTGAGCGAACTGCCGAGTACTGGAGCCTGAGCAAGGGGATGAA
GCTAGTGTACTCAAACAAACGACATTTTAGAGAAGATCTTCAGGAACACA
AACCGCACATGTTAATCTCCGTTCCGCGCGTTTTTGAGAATCTTTACGCT
GCTGTTACGCAGAAGATCAAGCGATCTTCGTCGGTTAGAAGGGCTCTGTT
TGCCTTCTTCCTGGCTGTCAGCATGGCGTTTATTGGCGCTCGCCGGCGCC
TCCGAAAACAACATATCCATTCCAAGCCGCTGAACGGGAGCTTTGCGCGA
GCTATGTGCGCCTTGCAAATGACCCTTCTCATGCCGCTGTACGCGTTGGC
AAACTTGTTGATTTGGCGGAAGATTCGTGCCGGGTTTGGAGGCAGGTTGC
GAATCTGCCTCTCTGGCGGCGGAAGTCTTGCGGGGCACCTCGAAGACTTT
TTCGAATGCGCCGGCATTGCAATCTGCATCGGATATGGCCTCACTGAGAC
GTCTCCGGTGATTGCAAACCGATTTGGCGAGAGCAACGTGCGCGGCTCAA
CAGGCATGGAGCTGCCGAGGGCTTATGTGAAGATCGTTGACACGGAGACC
GGGGTACCTGTACCTTTTGGTCAACAAGGGCGGTTGTGTGTGAAAGGGCC
GTATGTGTTCAACGAGTACTGGAGGAATCAAGGAGCGACTGCGAAGGCGT
TCGACACCGAAGGATACTTTGACACGGGGGACCTTGCGTACCGGGCGCTT
GGGGGCGATATCGTGATAAGCGGCCGGGCAAAGGAGCTCATCGTGCTGTC
GAATGGAGAAAACATCGAGCCGGCTCCAATCGAAGACGTGGTTGTAGCCA
GTCCGTACATCGACCAGCTCATGCTGGTCGGTCAGGACCAGAAGGCGTTG
GGAGCGCTTGTGGTGCCGAACTTGGTTGAGTTGGAGTTGCACGGGCTCGT
CGGAGAAGGAACCAGCGCAAGAGTACAACAGTTGCTGCAGGATGAAGAGG
GCAACCGAGAAGAACTGAGAACACTCGAGGCGAGGCTCATGGAATCGAAG
CAGCTCATGTCCACGCTGGAGAGCGAGATTGCGCAGCGGAATCGCCAGCG
GGTGGCATACACGGGGAACGATCGTGTGGCACACACCCGTTTGGTGTTGA
TTCCTTTCACTGTGGAAAACGGTATGATGACTCAAACGCTGAAGCTGAAG
AAGAATATTGTAGCCGACAAGTATGCGAAAGAAATTGAAAGTATGTATAG
AAAATAG

protein sequence of Gvermi12849.t1

>Gvermi12849.t1 ID=Gvermi12849.t1|Name=Gvermi12849.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=719bp
MACVAFQPPCFPPSSSRSRAPRRVCRTRRLRLAVSPLQPPETRVRPQVYP
PNVTPYPRPPGTSGQQALKVRTLQSIPELFLALAEPPTADLTAVVDVHHQ
PNVQLTFAQLAEQINRCTAALRMLGLRPHSNVALFSENSARWCIVDQAIM
SAGAAAAVRGVSAPPHELHFILDHSESKVLFVENVAVLRTMREEGVNFSN
LQFIVLLFGHAQPAKQFVFDVPVYSFEDLISMGANYTRDLVKPLAKRSDI
ATLLYTSGTTGNPKGVVLTHSNLLSQLEDVSLGSFDPSMGEIFLSILPCW
HVFERTAEYWSLSKGMKLVYSNKRHFREDLQEHKPHMLISVPRVFENLYA
AVTQKIKRSSSVRRALFAFFLAVSMAFIGARRRLRKQHIHSKPLNGSFAR
AMCALQMTLLMPLYALANLLIWRKIRAGFGGRLRICLSGGGSLAGHLEDF
FECAGIAICIGYGLTETSPVIANRFGESNVRGSTGMELPRAYVKIVDTET
GVPVPFGQQGRLCVKGPYVFNEYWRNQGATAKAFDTEGYFDTGDLAYRAL
GGDIVISGRAKELIVLSNGENIEPAPIEDVVVASPYIDQLMLVGQDQKAL
GALVVPNLVELELHGLVGEGTSARVQQLLQDEEGNREELRTLEARLMESK
QLMSTLESEIAQRNRQRVAYTGNDRVAHTRLVLIPFTVENGMMTQTLKLK
KNIVADKYAKEIESMYRK*

mRNA from alignment at ScGOVlb_425:1794757..1796913+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12849.t1 ID=Gvermi12849.t1|Name=Gvermi12849.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2157bp|location=Sequence derived from alignment at ScGOVlb_425:1794757..1796913+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCTGTGTGGCATTCCAGCCGCCGTGTTTCCCACCGTCCTCGTCGCG
GTCGCGCGCTCCGCGTCGTGTCTGTCGCACGCGGCGGCTGCGTCTCGCCG
TGTCGCCGCTGCAGCCGCCAGAGACGCGCGTACGCCCACAGGTTTACCCG
CCCAACGTCACGCCGTACCCGCGCCCGCCCGGCACCTCCGGCCAACAGGC
GCTTAAGGTGCGCACCCTGCAGAGCATCCCCGAGCTCTTTCTCGCCCTTG
CCGAGCCGCCCACGGCCGACCTCACCGCCGTTGTTGACGTGCATCATCAG
CCCAACGTACAGCTCACGTTTGCGCAGCTCGCAGAGCAGATCAACAGATG
CACTGCCGCTCTGCGCATGCTGGGGCTGCGCCCCCACTCCAATGTCGCCC
TTTTCTCAGAGAATTCCGCCCGCTGGTGCATTGTGGATCAGGCTATCATG
TCTGCAGGCGCTGCCGCCGCTGTGCGCGGCGTTTCCGCGCCCCCTCACGA
GCTACACTTCATCCTGGACCATTCGGAAAGCAAAGTTCTTTTCGTCGAAA
ACGTAGCCGTTCTCAGGACCATGCGCGAGGAAGGCGTAAACTTCTCAAAC
CTGCAATTCATTGTACTGCTGTTTGGTCATGCACAGCCGGCCAAGCAATT
CGTATTTGACGTTCCTGTTTACTCGTTTGAGGACCTCATCAGCATGGGTG
CCAATTACACGCGCGACTTGGTTAAACCGCTGGCGAAACGATCGGACATT
GCAACCTTGCTCTACACGTCGGGCACCACTGGGAACCCGAAAGGTGTCGT
ACTCACGCACTCAAACCTGCTCTCTCAGTTGGAGGATGTTTCGCTGGGAT
CCTTTGATCCGTCCATGGGAGAGATATTCCTCTCCATTCTGCCGTGTTGG
CACGTGTTTGAGCGAACTGCCGAGTACTGGAGCCTGAGCAAGGGGATGAA
GCTAGTGTACTCAAACAAACGACATTTTAGAGAAGATCTTCAGGAACACA
AACCGCACATGTTAATCTCCGTTCCGCGCGTTTTTGAGAATCTTTACGCT
GCTGTTACGCAGAAGATCAAGCGATCTTCGTCGGTTAGAAGGGCTCTGTT
TGCCTTCTTCCTGGCTGTCAGCATGGCGTTTATTGGCGCTCGCCGGCGCC
TCCGAAAACAACATATCCATTCCAAGCCGCTGAACGGGAGCTTTGCGCGA
GCTATGTGCGCCTTGCAAATGACCCTTCTCATGCCGCTGTACGCGTTGGC
AAACTTGTTGATTTGGCGGAAGATTCGTGCCGGGTTTGGAGGCAGGTTGC
GAATCTGCCTCTCTGGCGGCGGAAGTCTTGCGGGGCACCTCGAAGACTTT
TTCGAATGCGCCGGCATTGCAATCTGCATCGGATATGGCCTCACTGAGAC
GTCTCCGGTGATTGCAAACCGATTTGGCGAGAGCAACGTGCGCGGCTCAA
CAGGCATGGAGCTGCCGAGGGCTTATGTGAAGATCGTTGACACGGAGACC
GGGGTACCTGTACCTTTTGGTCAACAAGGGCGGTTGTGTGTGAAAGGGCC
GTATGTGTTCAACGAGTACTGGAGGAATCAAGGAGCGACTGCGAAGGCGT
TCGACACCGAAGGATACTTTGACACGGGGGACCTTGCGTACCGGGCGCTT
GGGGGCGATATCGTGATAAGCGGCCGGGCAAAGGAGCTCATCGTGCTGTC
GAATGGAGAAAACATCGAGCCGGCTCCAATCGAAGACGTGGTTGTAGCCA
GTCCGTACATCGACCAGCTCATGCTGGTCGGTCAGGACCAGAAGGCGTTG
GGAGCGCTTGTGGTGCCGAACTTGGTTGAGTTGGAGTTGCACGGGCTCGT
CGGAGAAGGAACCAGCGCAAGAGTACAACAGTTGCTGCAGGATGAAGAGG
GCAACCGAGAAGAACTGAGAACACTCGAGGCGAGGCTCATGGAATCGAAG
CAGCTCATGTCCACGCTGGAGAGCGAGATTGCGCAGCGGAATCGCCAGCG
GGTGGCATACACGGGGAACGATCGTGTGGCACACACCCGTTTGGTGTTGA
TTCCTTTCACTGTGGAAAACGGTATGATGACTCAAACGCTGAAGCTGAAG
AAGAATATTGTAGCCGACAAGTATGCGAAAGAAATTGAAAGTATGTATAG
AAAATAG

Coding sequence (CDS) from alignment at ScGOVlb_425:1794757..1796913+

>Gvermi12849.t1 ID=Gvermi12849.t1|Name=Gvermi12849.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2157bp|location=Sequence derived from alignment at ScGOVlb_425:1794757..1796913+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCTGTGTGGCATTCCAGCCGCCGTGTTTCCCACCGTCCTCGTCGCG
GTCGCGCGCTCCGCGTCGTGTCTGTCGCACGCGGCGGCTGCGTCTCGCCG
TGTCGCCGCTGCAGCCGCCAGAGACGCGCGTACGCCCACAGGTTTACCCG
CCCAACGTCACGCCGTACCCGCGCCCGCCCGGCACCTCCGGCCAACAGGC
GCTTAAGGTGCGCACCCTGCAGAGCATCCCCGAGCTCTTTCTCGCCCTTG
CCGAGCCGCCCACGGCCGACCTCACCGCCGTTGTTGACGTGCATCATCAG
CCCAACGTACAGCTCACGTTTGCGCAGCTCGCAGAGCAGATCAACAGATG
CACTGCCGCTCTGCGCATGCTGGGGCTGCGCCCCCACTCCAATGTCGCCC
TTTTCTCAGAGAATTCCGCCCGCTGGTGCATTGTGGATCAGGCTATCATG
TCTGCAGGCGCTGCCGCCGCTGTGCGCGGCGTTTCCGCGCCCCCTCACGA
GCTACACTTCATCCTGGACCATTCGGAAAGCAAAGTTCTTTTCGTCGAAA
ACGTAGCCGTTCTCAGGACCATGCGCGAGGAAGGCGTAAACTTCTCAAAC
CTGCAATTCATTGTACTGCTGTTTGGTCATGCACAGCCGGCCAAGCAATT
CGTATTTGACGTTCCTGTTTACTCGTTTGAGGACCTCATCAGCATGGGTG
CCAATTACACGCGCGACTTGGTTAAACCGCTGGCGAAACGATCGGACATT
GCAACCTTGCTCTACACGTCGGGCACCACTGGGAACCCGAAAGGTGTCGT
ACTCACGCACTCAAACCTGCTCTCTCAGTTGGAGGATGTTTCGCTGGGAT
CCTTTGATCCGTCCATGGGAGAGATATTCCTCTCCATTCTGCCGTGTTGG
CACGTGTTTGAGCGAACTGCCGAGTACTGGAGCCTGAGCAAGGGGATGAA
GCTAGTGTACTCAAACAAACGACATTTTAGAGAAGATCTTCAGGAACACA
AACCGCACATGTTAATCTCCGTTCCGCGCGTTTTTGAGAATCTTTACGCT
GCTGTTACGCAGAAGATCAAGCGATCTTCGTCGGTTAGAAGGGCTCTGTT
TGCCTTCTTCCTGGCTGTCAGCATGGCGTTTATTGGCGCTCGCCGGCGCC
TCCGAAAACAACATATCCATTCCAAGCCGCTGAACGGGAGCTTTGCGCGA
GCTATGTGCGCCTTGCAAATGACCCTTCTCATGCCGCTGTACGCGTTGGC
AAACTTGTTGATTTGGCGGAAGATTCGTGCCGGGTTTGGAGGCAGGTTGC
GAATCTGCCTCTCTGGCGGCGGAAGTCTTGCGGGGCACCTCGAAGACTTT
TTCGAATGCGCCGGCATTGCAATCTGCATCGGATATGGCCTCACTGAGAC
GTCTCCGGTGATTGCAAACCGATTTGGCGAGAGCAACGTGCGCGGCTCAA
CAGGCATGGAGCTGCCGAGGGCTTATGTGAAGATCGTTGACACGGAGACC
GGGGTACCTGTACCTTTTGGTCAACAAGGGCGGTTGTGTGTGAAAGGGCC
GTATGTGTTCAACGAGTACTGGAGGAATCAAGGAGCGACTGCGAAGGCGT
TCGACACCGAAGGATACTTTGACACGGGGGACCTTGCGTACCGGGCGCTT
GGGGGCGATATCGTGATAAGCGGCCGGGCAAAGGAGCTCATCGTGCTGTC
GAATGGAGAAAACATCGAGCCGGCTCCAATCGAAGACGTGGTTGTAGCCA
GTCCGTACATCGACCAGCTCATGCTGGTCGGTCAGGACCAGAAGGCGTTG
GGAGCGCTTGTGGTGCCGAACTTGGTTGAGTTGGAGTTGCACGGGCTCGT
CGGAGAAGGAACCAGCGCAAGAGTACAACAGTTGCTGCAGGATGAAGAGG
GCAACCGAGAAGAACTGAGAACACTCGAGGCGAGGCTCATGGAATCGAAG
CAGCTCATGTCCACGCTGGAGAGCGAGATTGCGCAGCGGAATCGCCAGCG
GGTGGCATACACGGGGAACGATCGTGTGGCACACACCCGTTTGGTGTTGA
TTCCTTTCACTGTGGAAAACGGTATGATGACTCAAACGCTGAAGCTGAAG
AAGAATATTGTAGCCGACAAGTATGCGAAAGAAATTGAAAGTATGTATAG
AAAATAG