Gvermi12829.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12829.t1
Unique NameGvermi12829.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length440
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1716348..1717820 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4081.Solyc01g008840.2.1
PFAMsPCI
Max annot lvl35493|Streptophyta
KEGG koko:K12176
GOsGO:0000338,GO:0003674,GO:0003712,GO:0003714,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006355,GO:0006464,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0019219,GO:0019222,GO:0019538,GO:0030163,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0070646,GO:0070647,GO:0071704,GO:0080090,GO:0140110,GO:1901564,GO:1901565,GO:1901575,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
Evalue5.35e-191
EggNOG OGsCOG5159@1|root,KOG1464@2759|Eukaryota,37MZ5@33090|Viridiplantae,3G7Y7@35493|Streptophyta,44S1I@71274|asterids
Descriptionmotif in proteasome subunits, Int-6, Nip-1 and TRIP-15
COG categoryOT
BRITEko00000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12829Gvermi12829Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1716348..1717820 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12829.t1Gvermi12829.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1716348..1717820 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12829.t1.stop1Gvermi12829.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1716348..1716350 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12829.t1.CDS1Gvermi12829.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1716348..1717580 -
Gvermi12829.t1.CDS2Gvermi12829.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1717734..1717820 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12829.t1.exon1Gvermi12829.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1716348..1717580 -
Gvermi12829.t1.exon2Gvermi12829.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1717734..1717820 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12829.t1.intron1Gvermi12829.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 1717581..1717733 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12829.t1.start1Gvermi12829.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1717818..1717820 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12829.t1 ID=Gvermi12829.t1|Name=Gvermi12829.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=440bp
MSDMEDDEDYGFEYETDDEEEQDIDIENQYYTAKGLLETDRKGALEAFEE
VLQMETEKGEWGFKALKQIVKLKFGLGDFKGMIVRYKEMLTYIRSAVTRN
YSENTINAILDFVSSSNQMDLLQEFYETTLAALQEARNERLWFKTNLKLG
KLWFDVGDFPRLMRILKELHKSCQRADGTDDHKKGTQLLEVYALEIQMYT
ATKNTKRLKHLYEKALQVKSAIPHPRIMGVIRECGGKMHMGASNFEKAHS
DFFESFKNYDEAGNARRIQCLKYLVLANMLALSDIDPFDSPEAKPYMNNK
EIQSMTDLRGAYTKKDVNEFERILKENSSTIMDDPFIRVHIQDLLTRFRS
QVLLKLIQPYTRIAIPYAAKELNIEVQELEDLLVALIMDNKVNGKIDQVN
NVLILHDKDSRGEEAKYDAIRSWSEHIELLQSTISSLLL*
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spliced messenger RNA

>Gvermi12829.t1 ID=Gvermi12829.t1|Name=Gvermi12829.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1320bp|location=Sequence derived from alignment at ScGOVlb_425:1716348..1717820- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGATATGGAAGATGACGAGGACTACGGTTTTGAGTATGAGACAGA
CGATGAAGAAGAGCAGGATATTGACATTGAGAATCAGTACTATACCGCAA
AAGGTTTACTCGAAACGGATAGAAAAGGTGCCCTCGAAGCGTTTGAAGAA
GTCCTCCAGATGGAAACGGAGAAAGGGGAATGGGGATTCAAGGCATTGAA
ACAGATCGTCAAGCTCAAGTTCGGTCTTGGAGACTTCAAGGGTATGATTG
TACGGTATAAGGAGATGCTTACCTACATCCGCTCTGCAGTTACTCGAAAC
TACTCAGAGAACACCATCAACGCCATACTTGACTTTGTTTCTTCTTCCAA
CCAAATGGATCTCCTACAGGAATTCTACGAGACAACATTAGCTGCATTGC
AAGAGGCGCGAAATGAGCGTTTGTGGTTCAAGACAAATCTCAAACTGGGC
AAACTATGGTTTGACGTTGGCGACTTTCCTAGACTTATGCGTATTCTGAA
GGAACTCCATAAATCTTGTCAAAGGGCGGACGGAACTGACGATCACAAGA
AAGGAACGCAACTTCTCGAGGTTTATGCCCTGGAAATTCAAATGTACACC
GCGACAAAGAACACGAAGCGTTTGAAGCATCTCTACGAGAAGGCCCTCCA
GGTGAAAAGCGCGATTCCTCACCCGCGAATCATGGGTGTTATTCGTGAAT
GCGGCGGCAAAATGCACATGGGGGCTAGCAACTTTGAGAAAGCACACTCC
GATTTCTTCGAATCCTTTAAGAATTACGACGAGGCAGGAAATGCAAGGCG
GATTCAGTGTTTAAAGTATCTTGTTCTCGCAAACATGCTTGCGCTCAGCG
ACATTGACCCCTTCGACTCGCCAGAAGCAAAACCCTACATGAACAACAAA
GAAATCCAGTCCATGACCGATCTACGAGGAGCCTACACAAAAAAGGATGT
CAACGAATTCGAGCGAATCTTGAAGGAAAACTCGTCGACCATCATGGACG
ATCCATTTATTCGGGTTCACATACAGGACCTTTTGACTCGTTTTCGATCG
CAAGTGCTTCTAAAATTGATTCAGCCGTACACCAGAATCGCGATACCATA
CGCAGCGAAAGAGTTGAATATTGAGGTGCAAGAACTAGAGGACTTACTGG
TAGCCTTGATCATGGACAACAAGGTGAACGGGAAAATTGATCAAGTGAAC
AATGTTCTCATTCTTCACGATAAGGATTCCAGGGGGGAAGAGGCCAAGTA
CGACGCCATTCGCAGCTGGAGTGAGCACATTGAGTTGCTTCAATCAACGA
TATCCAGTCTTCTGCTTTGA
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protein sequence of Gvermi12829.t1

>Gvermi12829.t1 ID=Gvermi12829.t1|Name=Gvermi12829.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=440bp
MSDMEDDEDYGFEYETDDEEEQDIDIENQYYTAKGLLETDRKGALEAFEE
VLQMETEKGEWGFKALKQIVKLKFGLGDFKGMIVRYKEMLTYIRSAVTRN
YSENTINAILDFVSSSNQMDLLQEFYETTLAALQEARNERLWFKTNLKLG
KLWFDVGDFPRLMRILKELHKSCQRADGTDDHKKGTQLLEVYALEIQMYT
ATKNTKRLKHLYEKALQVKSAIPHPRIMGVIRECGGKMHMGASNFEKAHS
DFFESFKNYDEAGNARRIQCLKYLVLANMLALSDIDPFDSPEAKPYMNNK
EIQSMTDLRGAYTKKDVNEFERILKENSSTIMDDPFIRVHIQDLLTRFRS
QVLLKLIQPYTRIAIPYAAKELNIEVQELEDLLVALIMDNKVNGKIDQVN
NVLILHDKDSRGEEAKYDAIRSWSEHIELLQSTISSLLL*
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mRNA from alignment at ScGOVlb_425:1716348..1717820-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12829.t1 ID=Gvermi12829.t1|Name=Gvermi12829.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1473bp|location=Sequence derived from alignment at ScGOVlb_425:1716348..1717820- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGGATATGGAAGATGACGAGGACTACGGTTTTGAGTATGAGACAGA
CGATGAAGAAGAGCAGGATATTGACATTGAGAATCAGGTATGTGTCTGAA
CCGCAATATTAATTCGTGAAATGACGTAGCTCATTCGTTTTAGAAAGTAT
CCTGTTTGTACCCGACGAAGAACTTGCTGGTTTCTAACTGCATTGTGATT
CTTGTCGTATGTACTCCTGGAAATGCGCTTTCAAGCTTAGTACTATACCG
CAAAAGGTTTACTCGAAACGGATAGAAAAGGTGCCCTCGAAGCGTTTGAA
GAAGTCCTCCAGATGGAAACGGAGAAAGGGGAATGGGGATTCAAGGCATT
GAAACAGATCGTCAAGCTCAAGTTCGGTCTTGGAGACTTCAAGGGTATGA
TTGTACGGTATAAGGAGATGCTTACCTACATCCGCTCTGCAGTTACTCGA
AACTACTCAGAGAACACCATCAACGCCATACTTGACTTTGTTTCTTCTTC
CAACCAAATGGATCTCCTACAGGAATTCTACGAGACAACATTAGCTGCAT
TGCAAGAGGCGCGAAATGAGCGTTTGTGGTTCAAGACAAATCTCAAACTG
GGCAAACTATGGTTTGACGTTGGCGACTTTCCTAGACTTATGCGTATTCT
GAAGGAACTCCATAAATCTTGTCAAAGGGCGGACGGAACTGACGATCACA
AGAAAGGAACGCAACTTCTCGAGGTTTATGCCCTGGAAATTCAAATGTAC
ACCGCGACAAAGAACACGAAGCGTTTGAAGCATCTCTACGAGAAGGCCCT
CCAGGTGAAAAGCGCGATTCCTCACCCGCGAATCATGGGTGTTATTCGTG
AATGCGGCGGCAAAATGCACATGGGGGCTAGCAACTTTGAGAAAGCACAC
TCCGATTTCTTCGAATCCTTTAAGAATTACGACGAGGCAGGAAATGCAAG
GCGGATTCAGTGTTTAAAGTATCTTGTTCTCGCAAACATGCTTGCGCTCA
GCGACATTGACCCCTTCGACTCGCCAGAAGCAAAACCCTACATGAACAAC
AAAGAAATCCAGTCCATGACCGATCTACGAGGAGCCTACACAAAAAAGGA
TGTCAACGAATTCGAGCGAATCTTGAAGGAAAACTCGTCGACCATCATGG
ACGATCCATTTATTCGGGTTCACATACAGGACCTTTTGACTCGTTTTCGA
TCGCAAGTGCTTCTAAAATTGATTCAGCCGTACACCAGAATCGCGATACC
ATACGCAGCGAAAGAGTTGAATATTGAGGTGCAAGAACTAGAGGACTTAC
TGGTAGCCTTGATCATGGACAACAAGGTGAACGGGAAAATTGATCAAGTG
AACAATGTTCTCATTCTTCACGATAAGGATTCCAGGGGGGAAGAGGCCAA
GTACGACGCCATTCGCAGCTGGAGTGAGCACATTGAGTTGCTTCAATCAA
CGATATCCAGTCTTCTGCTTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1716348..1717820-

>Gvermi12829.t1 ID=Gvermi12829.t1|Name=Gvermi12829.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1320bp|location=Sequence derived from alignment at ScGOVlb_425:1716348..1717820- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGGATATGGAAGATGACGAGGACTACGGTTTTGAGTATGAGACAGA
CGATGAAGAAGAGCAGGATATTGACATTGAGAATCAGTACTATACCGCAA
AAGGTTTACTCGAAACGGATAGAAAAGGTGCCCTCGAAGCGTTTGAAGAA
GTCCTCCAGATGGAAACGGAGAAAGGGGAATGGGGATTCAAGGCATTGAA
ACAGATCGTCAAGCTCAAGTTCGGTCTTGGAGACTTCAAGGGTATGATTG
TACGGTATAAGGAGATGCTTACCTACATCCGCTCTGCAGTTACTCGAAAC
TACTCAGAGAACACCATCAACGCCATACTTGACTTTGTTTCTTCTTCCAA
CCAAATGGATCTCCTACAGGAATTCTACGAGACAACATTAGCTGCATTGC
AAGAGGCGCGAAATGAGCGTTTGTGGTTCAAGACAAATCTCAAACTGGGC
AAACTATGGTTTGACGTTGGCGACTTTCCTAGACTTATGCGTATTCTGAA
GGAACTCCATAAATCTTGTCAAAGGGCGGACGGAACTGACGATCACAAGA
AAGGAACGCAACTTCTCGAGGTTTATGCCCTGGAAATTCAAATGTACACC
GCGACAAAGAACACGAAGCGTTTGAAGCATCTCTACGAGAAGGCCCTCCA
GGTGAAAAGCGCGATTCCTCACCCGCGAATCATGGGTGTTATTCGTGAAT
GCGGCGGCAAAATGCACATGGGGGCTAGCAACTTTGAGAAAGCACACTCC
GATTTCTTCGAATCCTTTAAGAATTACGACGAGGCAGGAAATGCAAGGCG
GATTCAGTGTTTAAAGTATCTTGTTCTCGCAAACATGCTTGCGCTCAGCG
ACATTGACCCCTTCGACTCGCCAGAAGCAAAACCCTACATGAACAACAAA
GAAATCCAGTCCATGACCGATCTACGAGGAGCCTACACAAAAAAGGATGT
CAACGAATTCGAGCGAATCTTGAAGGAAAACTCGTCGACCATCATGGACG
ATCCATTTATTCGGGTTCACATACAGGACCTTTTGACTCGTTTTCGATCG
CAAGTGCTTCTAAAATTGATTCAGCCGTACACCAGAATCGCGATACCATA
CGCAGCGAAAGAGTTGAATATTGAGGTGCAAGAACTAGAGGACTTACTGG
TAGCCTTGATCATGGACAACAAGGTGAACGGGAAAATTGATCAAGTGAAC
AATGTTCTCATTCTTCACGATAAGGATTCCAGGGGGGAAGAGGCCAAGTA
CGACGCCATTCGCAGCTGGAGTGAGCACATTGAGTTGCTTCAATCAACGA
TATCCAGTCTTCTGCTTTGA
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