Gvermi12794.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12794.t1
Unique Name	Gvermi12794.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	417

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_425	contig	ScGOVlb_425:1534019..1535269 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005704002.1
Preferred name	EIF5
PFAMs	W2,eIF-5_eIF-2B
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K03262,ko:K10683
KEGG Pathway	ko03013,ko03440,ko04214,map03013,map03440,map04214
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
Evalue	1.04e-67
EggNOG OGs	COG1601@1\|root,KOG2767@2759\|Eukaryota
Description	translation initiation factor activity
COG category	J
BRITE	ko00000,ko00001,ko03012,ko03019,ko03036,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12794	Gvermi12794	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_425 1534019..1535269 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12794.t1.start1	Gvermi12794.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_425 1534019..1534021 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12794.t1.CDS1	Gvermi12794.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_425 1534019..1535269 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12794.t1.exon1	Gvermi12794.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_425 1534019..1535269 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12794.t1.stop1	Gvermi12794.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_425 1535267..1535269 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12794.t1	Gvermi12794.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_425 1534019..1535269 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_425:1534019..1535269+
coding sequence from alignment at ScGOVlb_425:1534019..1535269+

mRNA sequence

>Gvermi12794.t1 ID=Gvermi12794.t1|Name=Gvermi12794.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=417bp
MDSINIGGGDDQFNRYKMPPVIGKVEGRGNGIKTRIVNCVEVARALHRPP
GYVCKFFGCELCAQTKINDADGVYIVNGSFSQSVLADTLQKFIKMFVLCQ
SCTLPETDLKIKKNGLITQLCNACGAEGMCDMTHKLCTFIVNNPPDGRKK
KVDGKRDKAARRAAKARKAAGEGDDDDERSRKKAAKKAAKKAAQTDNVDG
EAEFSTADFGAAGEEDADEDVQWSVDTSKEAQEARQRELGAAASILDRAP
VEDEWNRVRKLRAYIDDGKRASKVITKAEKIFGMDGTIQGIVKAAVVDEA
LSAVPSSVCDRAFAVLKEIGTPMPVEAQEALLDYFSWAAVHDNRMIPMFP
HILKLGYDEDLVEEEVILTWFKKDEVKDEVKDAVREFVHWLESAEEEGSD
DDDDDEEEDSTEGSEE*

spliced messenger RNA

>Gvermi12794.t1 ID=Gvermi12794.t1|Name=Gvermi12794.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1251bp|location=Sequence derived from alignment at ScGOVlb_425:1534019..1535269+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACAGCATCAACATTGGAGGCGGCGATGACCAGTTCAACCGCTACAA
AATGCCGCCGGTCATCGGCAAGGTCGAGGGCCGCGGCAACGGAATCAAAA
CGCGCATCGTCAACTGCGTGGAGGTTGCGCGCGCGCTGCACCGCCCGCCC
GGCTACGTGTGCAAATTCTTCGGCTGCGAGCTGTGCGCGCAGACCAAGAT
CAACGACGCCGACGGCGTGTACATTGTCAACGGCTCGTTCAGCCAGTCGG
TGCTGGCCGACACGCTGCAGAAGTTCATCAAGATGTTTGTGCTGTGCCAG
AGCTGCACGCTGCCGGAGACCGACCTCAAGATCAAGAAGAACGGGCTCAT
CACGCAGCTGTGCAACGCGTGTGGCGCGGAGGGTATGTGCGACATGACGC
ACAAGCTGTGTACGTTTATTGTCAACAACCCGCCGGACGGCAGGAAGAAG
AAGGTGGACGGCAAGAGGGACAAGGCCGCGCGCAGGGCCGCCAAGGCGCG
CAAGGCGGCCGGCGAGGGGGACGATGACGACGAGCGCAGCCGGAAGAAGG
CGGCCAAGAAGGCGGCCAAGAAGGCGGCGCAGACCGACAACGTGGACGGG
GAAGCAGAGTTTTCCACAGCCGATTTTGGCGCCGCGGGCGAAGAGGACGC
AGACGAAGATGTGCAGTGGAGCGTGGACACGTCCAAGGAGGCGCAGGAGG
CGCGTCAGAGGGAGCTCGGGGCCGCCGCGTCTATCTTGGACAGGGCACCC
GTGGAGGATGAGTGGAACAGGGTGAGGAAACTGCGTGCGTACATTGATGA
CGGAAAGCGCGCGAGCAAGGTGATCACCAAGGCGGAGAAAATCTTTGGCA
TGGACGGGACGATTCAGGGTATTGTGAAAGCGGCCGTGGTGGACGAAGCG
CTGTCGGCGGTGCCGAGCAGTGTGTGCGACCGTGCGTTTGCCGTGCTGAA
GGAGATTGGGACGCCGATGCCGGTGGAGGCTCAGGAGGCGCTTCTGGACT
ACTTTAGCTGGGCGGCGGTGCACGACAATAGGATGATTCCGATGTTCCCA
CACATTCTGAAACTGGGCTATGATGAGGACCTTGTGGAGGAGGAGGTGAT
CTTGACGTGGTTCAAGAAGGATGAGGTGAAAGATGAGGTGAAGGACGCCG
TGCGCGAATTTGTGCACTGGCTGGAGAGCGCGGAGGAAGAGGGCAGcgac
gacgatgacgacgatgaggaggaggacAGCACTGAGGGCAGTGAGGAGTA
G

protein sequence of Gvermi12794.t1

>Gvermi12794.t1 ID=Gvermi12794.t1|Name=Gvermi12794.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=417bp
MDSINIGGGDDQFNRYKMPPVIGKVEGRGNGIKTRIVNCVEVARALHRPP
GYVCKFFGCELCAQTKINDADGVYIVNGSFSQSVLADTLQKFIKMFVLCQ
SCTLPETDLKIKKNGLITQLCNACGAEGMCDMTHKLCTFIVNNPPDGRKK
KVDGKRDKAARRAAKARKAAGEGDDDDERSRKKAAKKAAKKAAQTDNVDG
EAEFSTADFGAAGEEDADEDVQWSVDTSKEAQEARQRELGAAASILDRAP
VEDEWNRVRKLRAYIDDGKRASKVITKAEKIFGMDGTIQGIVKAAVVDEA
LSAVPSSVCDRAFAVLKEIGTPMPVEAQEALLDYFSWAAVHDNRMIPMFP
HILKLGYDEDLVEEEVILTWFKKDEVKDEVKDAVREFVHWLESAEEEGSD
DDDDDEEEDSTEGSEE*

mRNA from alignment at ScGOVlb_425:1534019..1535269+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12794.t1 ID=Gvermi12794.t1|Name=Gvermi12794.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1251bp|location=Sequence derived from alignment at ScGOVlb_425:1534019..1535269+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACAGCATCAACATTGGAGGCGGCGATGACCAGTTCAACCGCTACAA
AATGCCGCCGGTCATCGGCAAGGTCGAGGGCCGCGGCAACGGAATCAAAA
CGCGCATCGTCAACTGCGTGGAGGTTGCGCGCGCGCTGCACCGCCCGCCC
GGCTACGTGTGCAAATTCTTCGGCTGCGAGCTGTGCGCGCAGACCAAGAT
CAACGACGCCGACGGCGTGTACATTGTCAACGGCTCGTTCAGCCAGTCGG
TGCTGGCCGACACGCTGCAGAAGTTCATCAAGATGTTTGTGCTGTGCCAG
AGCTGCACGCTGCCGGAGACCGACCTCAAGATCAAGAAGAACGGGCTCAT
CACGCAGCTGTGCAACGCGTGTGGCGCGGAGGGTATGTGCGACATGACGC
ACAAGCTGTGTACGTTTATTGTCAACAACCCGCCGGACGGCAGGAAGAAG
AAGGTGGACGGCAAGAGGGACAAGGCCGCGCGCAGGGCCGCCAAGGCGCG
CAAGGCGGCCGGCGAGGGGGACGATGACGACGAGCGCAGCCGGAAGAAGG
CGGCCAAGAAGGCGGCCAAGAAGGCGGCGCAGACCGACAACGTGGACGGG
GAAGCAGAGTTTTCCACAGCCGATTTTGGCGCCGCGGGCGAAGAGGACGC
AGACGAAGATGTGCAGTGGAGCGTGGACACGTCCAAGGAGGCGCAGGAGG
CGCGTCAGAGGGAGCTCGGGGCCGCCGCGTCTATCTTGGACAGGGCACCC
GTGGAGGATGAGTGGAACAGGGTGAGGAAACTGCGTGCGTACATTGATGA
CGGAAAGCGCGCGAGCAAGGTGATCACCAAGGCGGAGAAAATCTTTGGCA
TGGACGGGACGATTCAGGGTATTGTGAAAGCGGCCGTGGTGGACGAAGCG
CTGTCGGCGGTGCCGAGCAGTGTGTGCGACCGTGCGTTTGCCGTGCTGAA
GGAGATTGGGACGCCGATGCCGGTGGAGGCTCAGGAGGCGCTTCTGGACT
ACTTTAGCTGGGCGGCGGTGCACGACAATAGGATGATTCCGATGTTCCCA
CACATTCTGAAACTGGGCTATGATGAGGACCTTGTGGAGGAGGAGGTGAT
CTTGACGTGGTTCAAGAAGGATGAGGTGAAAGATGAGGTGAAGGACGCCG
TGCGCGAATTTGTGCACTGGCTGGAGAGCGCGGAGGAAGAGGGCAGcgac
gacgatgacgacgatgaggaggaggacAGCACTGAGGGCAGTGAGGAGTA
G

Coding sequence (CDS) from alignment at ScGOVlb_425:1534019..1535269+

>Gvermi12794.t1 ID=Gvermi12794.t1|Name=Gvermi12794.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1251bp|location=Sequence derived from alignment at ScGOVlb_425:1534019..1535269+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACAGCATCAACATTGGAGGCGGCGATGACCAGTTCAACCGCTACAA
AATGCCGCCGGTCATCGGCAAGGTCGAGGGCCGCGGCAACGGAATCAAAA
CGCGCATCGTCAACTGCGTGGAGGTTGCGCGCGCGCTGCACCGCCCGCCC
GGCTACGTGTGCAAATTCTTCGGCTGCGAGCTGTGCGCGCAGACCAAGAT
CAACGACGCCGACGGCGTGTACATTGTCAACGGCTCGTTCAGCCAGTCGG
TGCTGGCCGACACGCTGCAGAAGTTCATCAAGATGTTTGTGCTGTGCCAG
AGCTGCACGCTGCCGGAGACCGACCTCAAGATCAAGAAGAACGGGCTCAT
CACGCAGCTGTGCAACGCGTGTGGCGCGGAGGGTATGTGCGACATGACGC
ACAAGCTGTGTACGTTTATTGTCAACAACCCGCCGGACGGCAGGAAGAAG
AAGGTGGACGGCAAGAGGGACAAGGCCGCGCGCAGGGCCGCCAAGGCGCG
CAAGGCGGCCGGCGAGGGGGACGATGACGACGAGCGCAGCCGGAAGAAGG
CGGCCAAGAAGGCGGCCAAGAAGGCGGCGCAGACCGACAACGTGGACGGG
GAAGCAGAGTTTTCCACAGCCGATTTTGGCGCCGCGGGCGAAGAGGACGC
AGACGAAGATGTGCAGTGGAGCGTGGACACGTCCAAGGAGGCGCAGGAGG
CGCGTCAGAGGGAGCTCGGGGCCGCCGCGTCTATCTTGGACAGGGCACCC
GTGGAGGATGAGTGGAACAGGGTGAGGAAACTGCGTGCGTACATTGATGA
CGGAAAGCGCGCGAGCAAGGTGATCACCAAGGCGGAGAAAATCTTTGGCA
TGGACGGGACGATTCAGGGTATTGTGAAAGCGGCCGTGGTGGACGAAGCG
CTGTCGGCGGTGCCGAGCAGTGTGTGCGACCGTGCGTTTGCCGTGCTGAA
GGAGATTGGGACGCCGATGCCGGTGGAGGCTCAGGAGGCGCTTCTGGACT
ACTTTAGCTGGGCGGCGGTGCACGACAATAGGATGATTCCGATGTTCCCA
CACATTCTGAAACTGGGCTATGATGAGGACCTTGTGGAGGAGGAGGTGAT
CTTGACGTGGTTCAAGAAGGATGAGGTGAAAGATGAGGTGAAGGACGCCG
TGCGCGAATTTGTGCACTGGCTGGAGAGCGCGGAGGAAGAGGGCAGcgac
gacgatgacgacgatgaggaggaggacAGCACTGAGGGCAGTGAGGAGTA
G