Gvermi12757.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12757.t1
Unique NameGvermi12757.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length309
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1390835..1391761 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705377.1
PFAMsHydrolase_4
Max annot lvl2759|Eukaryota
KEGG rclassRC00020,RC00041
KEGG koko:K01054
KEGG ReactionR01351
KEGG Pathwayko00561,ko01100,ko04714,ko04723,ko04923,map00561,map01100,map04714,map04723,map04923
KEGG ModuleM00098
Evalue1.93e-52
EggNOG OGsCOG2267@1|root,KOG1455@2759|Eukaryota
EC3.1.1.23
Descriptionacylglycerol lipase activity
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000,ko01002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12757Gvermi12757Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1390835..1391761 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12757.t1.stop1Gvermi12757.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1390835..1390837 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12757.t1.CDS1Gvermi12757.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1390835..1391761 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12757.t1.exon1Gvermi12757.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1390835..1391761 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12757.t1.start1Gvermi12757.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1391759..1391761 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12757.t1Gvermi12757.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1390835..1391761 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12757.t1 ID=Gvermi12757.t1|Name=Gvermi12757.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=309bp
MAYKYSEASLPSSFKPEQLKLFSWLPEKPWRAAVFLQHGFRSHTQYNFLR
NDTPTKRGIYGDGATPHDTSLIRELNNRKIAVFGHDHVGHGRSSGVRAYF
PSFNTLVEDAILHIKQVDAEHDFTNNAVPIFLIGHSMGGTIAILAARREP
TLISGIALSSAATEPPANMFGLIGRINRALSGITSWLFPYLQVLTLPKSP
DPDMQAMFEADELNCNAEGVRARVGREFLDAYEDISNNAHTFETSFLSVH
GEHDTLIHPLAAKRFFDAAISKDKTLHTGTGRWHNIFTEKGKEEMWTLFA
DWISKRST*
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spliced messenger RNA

>Gvermi12757.t1 ID=Gvermi12757.t1|Name=Gvermi12757.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=927bp|location=Sequence derived from alignment at ScGOVlb_425:1390835..1391761- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTACAAGTACTCCGAGGCATCGCTACCGTCATCCTTTAAACCGGA
GCAGCTCAAGCTCTTCAGTTGGCTTCCGGAAAAGCCATGGCGAGCCGCTG
TTTTCCTCCAGCACGGATTCCGCTCACACACGCAGTACAACTTTCTGCGC
AACGACACGCCGACAAAGCGCGGTATCTACGGAGATGGAGCCACTCCGCA
CGACACCTCCCTAATTCGAGAACTCAACAATCGCAAAATTGCCGTCTTCG
GTCATGATCACGTGGGTCACGGCCGTTCAAGTGGTGTCCGTGCGTATTTT
CCTTCCTTCAACACCCTCGTCGAAGACGCCATTCTCCACATAAAGCAAGT
CGACGCCGAACACGATTTCACCAACAACGCCGTTCCGATTTTCCTTATCG
GCCATTCAATGGGCGGCACGATTGCAATCCTGGCAGCCCGGCGAGAGCCC
ACTTTGATATCGGGTATTGCGCTGTCATCTGCGGCGACCGAACCCCCGGC
CAACATGTTTGGTCTGATCGGTAGAATCAATCGCGCACTGTCCGGAATAA
CCAGTTGGCTTTTCCCGTACCTGCAGGTGCTTACACTTCCAAAGTCGCCC
GATCCTGACATGCAGGCAATGTTCGAAGCTGACGAGCTCAACTGCAATGC
CGAGGGTGTTCGTGCTCGAGTTGGCCGAGAGTTTTTGGACGCCTACGAAG
ACATTAGCAACAACGCGCACACGTTCGAAACTTCATTTTTGTCCGTCCAT
GGAGAGCACGATACCTTGATACACCCTCTGGCTGCTAAGCGCTTCTTCGA
CGCTGCTATAAGTAAAGACAAAACTCTGCATACTGGAACGGGAAGATGGC
ACAATATCTTCACAGAGAAAGGTAAAGAAGAAATGTGGACTCTGTTTGCT
GACTGGATCAGCAAAAGATCAACATAA
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protein sequence of Gvermi12757.t1

>Gvermi12757.t1 ID=Gvermi12757.t1|Name=Gvermi12757.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=309bp
MAYKYSEASLPSSFKPEQLKLFSWLPEKPWRAAVFLQHGFRSHTQYNFLR
NDTPTKRGIYGDGATPHDTSLIRELNNRKIAVFGHDHVGHGRSSGVRAYF
PSFNTLVEDAILHIKQVDAEHDFTNNAVPIFLIGHSMGGTIAILAARREP
TLISGIALSSAATEPPANMFGLIGRINRALSGITSWLFPYLQVLTLPKSP
DPDMQAMFEADELNCNAEGVRARVGREFLDAYEDISNNAHTFETSFLSVH
GEHDTLIHPLAAKRFFDAAISKDKTLHTGTGRWHNIFTEKGKEEMWTLFA
DWISKRST*
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mRNA from alignment at ScGOVlb_425:1390835..1391761-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12757.t1 ID=Gvermi12757.t1|Name=Gvermi12757.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=927bp|location=Sequence derived from alignment at ScGOVlb_425:1390835..1391761- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTTACAAGTACTCCGAGGCATCGCTACCGTCATCCTTTAAACCGGA
GCAGCTCAAGCTCTTCAGTTGGCTTCCGGAAAAGCCATGGCGAGCCGCTG
TTTTCCTCCAGCACGGATTCCGCTCACACACGCAGTACAACTTTCTGCGC
AACGACACGCCGACAAAGCGCGGTATCTACGGAGATGGAGCCACTCCGCA
CGACACCTCCCTAATTCGAGAACTCAACAATCGCAAAATTGCCGTCTTCG
GTCATGATCACGTGGGTCACGGCCGTTCAAGTGGTGTCCGTGCGTATTTT
CCTTCCTTCAACACCCTCGTCGAAGACGCCATTCTCCACATAAAGCAAGT
CGACGCCGAACACGATTTCACCAACAACGCCGTTCCGATTTTCCTTATCG
GCCATTCAATGGGCGGCACGATTGCAATCCTGGCAGCCCGGCGAGAGCCC
ACTTTGATATCGGGTATTGCGCTGTCATCTGCGGCGACCGAACCCCCGGC
CAACATGTTTGGTCTGATCGGTAGAATCAATCGCGCACTGTCCGGAATAA
CCAGTTGGCTTTTCCCGTACCTGCAGGTGCTTACACTTCCAAAGTCGCCC
GATCCTGACATGCAGGCAATGTTCGAAGCTGACGAGCTCAACTGCAATGC
CGAGGGTGTTCGTGCTCGAGTTGGCCGAGAGTTTTTGGACGCCTACGAAG
ACATTAGCAACAACGCGCACACGTTCGAAACTTCATTTTTGTCCGTCCAT
GGAGAGCACGATACCTTGATACACCCTCTGGCTGCTAAGCGCTTCTTCGA
CGCTGCTATAAGTAAAGACAAAACTCTGCATACTGGAACGGGAAGATGGC
ACAATATCTTCACAGAGAAAGGTAAAGAAGAAATGTGGACTCTGTTTGCT
GACTGGATCAGCAAAAGATCAACATAA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1390835..1391761-

>Gvermi12757.t1 ID=Gvermi12757.t1|Name=Gvermi12757.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=927bp|location=Sequence derived from alignment at ScGOVlb_425:1390835..1391761- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTTACAAGTACTCCGAGGCATCGCTACCGTCATCCTTTAAACCGGA
GCAGCTCAAGCTCTTCAGTTGGCTTCCGGAAAAGCCATGGCGAGCCGCTG
TTTTCCTCCAGCACGGATTCCGCTCACACACGCAGTACAACTTTCTGCGC
AACGACACGCCGACAAAGCGCGGTATCTACGGAGATGGAGCCACTCCGCA
CGACACCTCCCTAATTCGAGAACTCAACAATCGCAAAATTGCCGTCTTCG
GTCATGATCACGTGGGTCACGGCCGTTCAAGTGGTGTCCGTGCGTATTTT
CCTTCCTTCAACACCCTCGTCGAAGACGCCATTCTCCACATAAAGCAAGT
CGACGCCGAACACGATTTCACCAACAACGCCGTTCCGATTTTCCTTATCG
GCCATTCAATGGGCGGCACGATTGCAATCCTGGCAGCCCGGCGAGAGCCC
ACTTTGATATCGGGTATTGCGCTGTCATCTGCGGCGACCGAACCCCCGGC
CAACATGTTTGGTCTGATCGGTAGAATCAATCGCGCACTGTCCGGAATAA
CCAGTTGGCTTTTCCCGTACCTGCAGGTGCTTACACTTCCAAAGTCGCCC
GATCCTGACATGCAGGCAATGTTCGAAGCTGACGAGCTCAACTGCAATGC
CGAGGGTGTTCGTGCTCGAGTTGGCCGAGAGTTTTTGGACGCCTACGAAG
ACATTAGCAACAACGCGCACACGTTCGAAACTTCATTTTTGTCCGTCCAT
GGAGAGCACGATACCTTGATACACCCTCTGGCTGCTAAGCGCTTCTTCGA
CGCTGCTATAAGTAAAGACAAAACTCTGCATACTGGAACGGGAAGATGGC
ACAATATCTTCACAGAGAAAGGTAAAGAAGAAATGTGGACTCTGTTTGCT
GACTGGATCAGCAAAAGATCAACATAA
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