Gvermi12744.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12744.t1
Unique NameGvermi12744.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length153
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1362719..1363317 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog132113.XP_003491775.1
PFAMsAlba,Rpp20
Max annot lvl33208|Metazoa
KEGG koko:K14527
KEGG Pathwayko03008,ko03013,map03008,map03013
GOsGO:0000172,GO:0000966,GO:0001682,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005655,GO:0005730,GO:0005732,GO:0005737,GO:0005739,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030677,GO:0030678,GO:0030681,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0098798,GO:0099116,GO:1901360,GO:1902494,GO:1902555,GO:1905348,GO:1990904
Evalue1.15e-07
EggNOG OGsKOG3631@1|root,KOG3631@2759|Eukaryota,3A5MY@33154|Opisthokonta,3BV57@33208|Metazoa,3DBHC@33213|Bilateria,4211D@6656|Arthropoda,3SPMM@50557|Insecta,46MN3@7399|Hymenoptera
EC3.1.26.5
DescriptionComponent of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. Also a component of RNase MRP complex, which cleaves pre-rRNA sequences
COG categoryL
BRITEko00000,ko00001,ko01000,ko03009,ko03016,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12744Gvermi12744Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1362719..1363317 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12744.t1Gvermi12744.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1362719..1363317 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12744.t1.start1Gvermi12744.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1362719..1362721 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12744.t1.CDS1Gvermi12744.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1362719..1362827 +
Gvermi12744.t1.CDS2Gvermi12744.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1362896..1363167 +
Gvermi12744.t1.CDS3Gvermi12744.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1363240..1363317 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12744.t1.exon1Gvermi12744.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1362719..1362827 +
Gvermi12744.t1.exon2Gvermi12744.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1362896..1363167 +
Gvermi12744.t1.exon3Gvermi12744.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1363240..1363317 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12744.t1.intron1Gvermi12744.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 1362828..1362895 +
Gvermi12744.t1.intron2Gvermi12744.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 1363168..1363239 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12744.t1.stop1Gvermi12744.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1363315..1363317 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12744.t1 ID=Gvermi12744.t1|Name=Gvermi12744.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=153bp
MSQKRKRAPHGDEPGAPLPPPPPPPPQRATAPNPALYRVIRRVPTALAPS
CRSIHVSRATKLAPLARRVDALLHTGCTPVLLHAMGAAIAKCCQFALAIQ
QRSAHAVCIELTTSTQVVYDDYHPVVERAEETTVSRNVSALHVTLRHAPR
SV*
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spliced messenger RNA

>Gvermi12744.t1 ID=Gvermi12744.t1|Name=Gvermi12744.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=459bp|location=Sequence derived from alignment at ScGOVlb_425:1362719..1363317+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCCAAAAGCGCAAGCGCGCGCCGCACGGCGACGAGCCCGGCGCCCC
GTTgccgccgccgccgccgccgccgccgcagcgcgccaccgccCCGAATC
CCGCGCTTTACCGCGTCATCCGGCGGGTGCCCACGGCGCTGGCGCCGTCG
TGCAGATCCATCCACGTCTCGCGCGCAACCAAGCTGGCGCCGCTCGCCAG
GCGCGTCGACGCCCTGCTGCACACCGGCTGCACGCCGGTGCTGCTACACG
CCATGGGCGCCGCCATCGCCAAGTGCTGCCAGTTCGCGCTGGCCATTCAG
CAGCGCAGCGCGCACGCCGTCTGCATCGAGCTCACCACCAGCACGCAGGT
CGTGTACGACGACTACCACCCCGTCGTGGAGCGCGCCGAGGAGACCACCG
TGTCGCGCAATGTTTCCGCGCTGCATGTCACTCTGCGCCACGCCCCGCGC
TCGGTGTAA
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protein sequence of Gvermi12744.t1

>Gvermi12744.t1 ID=Gvermi12744.t1|Name=Gvermi12744.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=153bp
MSQKRKRAPHGDEPGAPLPPPPPPPPQRATAPNPALYRVIRRVPTALAPS
CRSIHVSRATKLAPLARRVDALLHTGCTPVLLHAMGAAIAKCCQFALAIQ
QRSAHAVCIELTTSTQVVYDDYHPVVERAEETTVSRNVSALHVTLRHAPR
SV*
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mRNA from alignment at ScGOVlb_425:1362719..1363317+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12744.t1 ID=Gvermi12744.t1|Name=Gvermi12744.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=599bp|location=Sequence derived from alignment at ScGOVlb_425:1362719..1363317+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCCCAAAAGCGCAAGCGCGCGCCGCACGGCGACGAGCCCGGCGCCCC
GTTgccgccgccgccgccgccgccgccgcagcgcgccaccgccCCGAATC
CCGCGCTTTGTAAGTGCCGCCGCTTTCCCGCCGCGCGCAGCGCGTCCGTG
GCTGACCGTCGCTTTCCGCCGCCGCAGACCGCGTCATCCGGCGGGTGCCC
ACGGCGCTGGCGCCGTCGTGCAGATCCATCCACGTCTCGCGCGCAACCAA
GCTGGCGCCGCTCGCCAGGCGCGTCGACGCCCTGCTGCACACCGGCTGCA
CGCCGGTGCTGCTACACGCCATGGGCGCCGCCATCGCCAAGTGCTGCCAG
TTCGCGCTGGCCATTCAGCAGCGCAGCGCGCACGCCGTCTGCATCGAGCT
CACCACCAGCACGCAGGTCGTGTACGACGACTACCACCCCGTCGTGGAGG
TACGTTgcgctccgccgcccactgcgccccgcgccgcgcgctcgcTGACT
TTGCACCTTCCATCGCGCAAGCGCGCCGAGGAGACCACCGTGTCGCGCAA
TGTTTCCGCGCTGCATGTCACTCTGCGCCACGCCCCGCGCTCGGTGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1362719..1363317+

>Gvermi12744.t1 ID=Gvermi12744.t1|Name=Gvermi12744.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=459bp|location=Sequence derived from alignment at ScGOVlb_425:1362719..1363317+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCCCAAAAGCGCAAGCGCGCGCCGCACGGCGACGAGCCCGGCGCCCC
GTTgccgccgccgccgccgccgccgccgcagcgcgccaccgccCCGAATC
CCGCGCTTTACCGCGTCATCCGGCGGGTGCCCACGGCGCTGGCGCCGTCG
TGCAGATCCATCCACGTCTCGCGCGCAACCAAGCTGGCGCCGCTCGCCAG
GCGCGTCGACGCCCTGCTGCACACCGGCTGCACGCCGGTGCTGCTACACG
CCATGGGCGCCGCCATCGCCAAGTGCTGCCAGTTCGCGCTGGCCATTCAG
CAGCGCAGCGCGCACGCCGTCTGCATCGAGCTCACCACCAGCACGCAGGT
CGTGTACGACGACTACCACCCCGTCGTGGAGCGCGCCGAGGAGACCACCG
TGTCGCGCAATGTTTCCGCGCTGCATGTCACTCTGCGCCACGCCCCGCGC
TCGGTGTAA
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