Gvermi12723.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12723.t1
Unique Name	Gvermi12723.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	366

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_425	contig	ScGOVlb_425:1217084..1218181 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CML085CT
PFAMs	UAA
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K15276
KEGG TC	2.A.7.11.2,2.A.7.11.3
Evalue	7.68e-114
EggNOG OGs	COG0697@1\|root,KOG1581@2759\|Eukaryota
Description	UDP-galactose transmembrane transporter activity
COG category	U
BRITE	ko00000,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12723	Gvermi12723	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_425 1217084..1218181 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12723.t1.start1	Gvermi12723.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_425 1217084..1217086 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12723.t1.CDS1	Gvermi12723.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_425 1217084..1218181 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12723.t1.exon1	Gvermi12723.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_425 1217084..1218181 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12723.t1.stop1	Gvermi12723.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_425 1218179..1218181 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12723.t1	Gvermi12723.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_425 1217084..1218181 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_425:1217084..1218181+
coding sequence from alignment at ScGOVlb_425:1217084..1218181+

mRNA sequence

>Gvermi12723.t1 ID=Gvermi12723.t1|Name=Gvermi12723.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=366bp
MADKAVPMEEPEPTPAPQPVGIWKYLPSPRVMMCVVGIIGSLMLYALLQE
RIMTKPYTNGSEQDGEEGEYFKNSLVLVFANRFSAAIVAACILLAKGDFS
ELRNKAPLYKYFMISVSNVIATSCQYEALKWVTLPTQTLAKCAKMIPVMI
WGTFMSGKRYGPVEYGVAVFVALGCTVFLLSGNIKAKKASDEDSYYGLLL
MLGYLAFDGFTSTFQEKLFAGYQMTIYNQMLYVNMCSGLMSICFLVGSGK
LFESLAFLLKYPTVVGDMAVLSFSAVSGQFAITYTIKEFGALLYATIMTI
RQFLSVFVSNLLFRHGMTGMQWLGAATVFGALFYKTYAKANKPKTGPKTD
APLEEKATIVQTPAK*

spliced messenger RNA

>Gvermi12723.t1 ID=Gvermi12723.t1|Name=Gvermi12723.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1098bp|location=Sequence derived from alignment at ScGOVlb_425:1217084..1218181+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGACAAAGCAGTGCCCATGGAggaaccggagcccacgccggcgcc
gcagccggTCGGCATCTGGAAGTACCTCCCGTCCCCGCGCGTCATGATGT
GCGTCGTCGGCATCATCGGTTCGCTCATGCTGTACGCCTTGTTGCAGGAA
CGAATCATGACCAAGCCCTACACCAATGGATCCGAGCAAGACGGCGAAGA
GGGCGAGTACTTCAAGAACTCGCTCGTGCTCGTCTTTGCCAATCGCTTTT
CCGCCGCGATTGTCGCCGCTTGCATTTTGCTCGCAAAGGGCGACTTCTCC
GAGCTGCGAAACAAGGCCCCGCTCTACAAGTACTTCATGATCAGCGTCAG
CAACGTCATTGCCACCAGCTGCCAGTACGAGGCGCTCAAGTGGGTCACGT
TGCCCACGCAGACCCTGGCCAAGTGCGCCAAGATGATTCCCGTCATGATC
TGGGGCACGTTCATGTCCGGCAAGCGCTACGGCCCCGTCGAGTACGGTGT
GGCCGTCTTCGTCGCCCTGGGGTGCACCGTCTTCCTCTTGTCTGGAAACA
TCAAGGCCAAGAAGGCCTCCGATGAGGATTCCTACTACGGCCTTTTGCTC
ATGCTTGGCTACCTTGCCTTCGACGGCTTTACCTCCACCTTTCAGGAGAA
ACTCTTTGCCGGCTACCAGATGACCATCTACAACCAGATGCTTTACGTCA
ACATGTGTTCGGGGCTCATGAGCATCTGCTTCTTGGTCGGATCGGGCAAG
CTCTTTGAGTCCCTCGCTTTCCTCCTCAAGTATCCCACCGTCGTTGGAGA
CATGGCTGTGCTGTCTTTCTCGGCCGTGTCGGGCCAGTTTGCCATTACCT
ACACCATCAAGGAGTTCGGCGCGCTGCTGTACGCCACCATCATGACCATT
CGCCAATTCTTGTCTGTGTTCGTGTCCAACCTTCTCTTCCGCCACGGAAT
GACCGGAATGCAGTGGCTTGGCGCCGCCACAGTCTTCGGCGCCCTCTTCT
ACAAGACCTACGCAAAGGCCAACAAGCCAAAGACAGGGCCCAAGACCGAC
GCTCCGCTCGAGGAGAAGGCTACTATTGTACAGACTCCAGCAAAGTAA

protein sequence of Gvermi12723.t1

>Gvermi12723.t1 ID=Gvermi12723.t1|Name=Gvermi12723.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=366bp
MADKAVPMEEPEPTPAPQPVGIWKYLPSPRVMMCVVGIIGSLMLYALLQE
RIMTKPYTNGSEQDGEEGEYFKNSLVLVFANRFSAAIVAACILLAKGDFS
ELRNKAPLYKYFMISVSNVIATSCQYEALKWVTLPTQTLAKCAKMIPVMI
WGTFMSGKRYGPVEYGVAVFVALGCTVFLLSGNIKAKKASDEDSYYGLLL
MLGYLAFDGFTSTFQEKLFAGYQMTIYNQMLYVNMCSGLMSICFLVGSGK
LFESLAFLLKYPTVVGDMAVLSFSAVSGQFAITYTIKEFGALLYATIMTI
RQFLSVFVSNLLFRHGMTGMQWLGAATVFGALFYKTYAKANKPKTGPKTD
APLEEKATIVQTPAK*

mRNA from alignment at ScGOVlb_425:1217084..1218181+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12723.t1 ID=Gvermi12723.t1|Name=Gvermi12723.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1098bp|location=Sequence derived from alignment at ScGOVlb_425:1217084..1218181+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCGACAAAGCAGTGCCCATGGAggaaccggagcccacgccggcgcc
gcagccggTCGGCATCTGGAAGTACCTCCCGTCCCCGCGCGTCATGATGT
GCGTCGTCGGCATCATCGGTTCGCTCATGCTGTACGCCTTGTTGCAGGAA
CGAATCATGACCAAGCCCTACACCAATGGATCCGAGCAAGACGGCGAAGA
GGGCGAGTACTTCAAGAACTCGCTCGTGCTCGTCTTTGCCAATCGCTTTT
CCGCCGCGATTGTCGCCGCTTGCATTTTGCTCGCAAAGGGCGACTTCTCC
GAGCTGCGAAACAAGGCCCCGCTCTACAAGTACTTCATGATCAGCGTCAG
CAACGTCATTGCCACCAGCTGCCAGTACGAGGCGCTCAAGTGGGTCACGT
TGCCCACGCAGACCCTGGCCAAGTGCGCCAAGATGATTCCCGTCATGATC
TGGGGCACGTTCATGTCCGGCAAGCGCTACGGCCCCGTCGAGTACGGTGT
GGCCGTCTTCGTCGCCCTGGGGTGCACCGTCTTCCTCTTGTCTGGAAACA
TCAAGGCCAAGAAGGCCTCCGATGAGGATTCCTACTACGGCCTTTTGCTC
ATGCTTGGCTACCTTGCCTTCGACGGCTTTACCTCCACCTTTCAGGAGAA
ACTCTTTGCCGGCTACCAGATGACCATCTACAACCAGATGCTTTACGTCA
ACATGTGTTCGGGGCTCATGAGCATCTGCTTCTTGGTCGGATCGGGCAAG
CTCTTTGAGTCCCTCGCTTTCCTCCTCAAGTATCCCACCGTCGTTGGAGA
CATGGCTGTGCTGTCTTTCTCGGCCGTGTCGGGCCAGTTTGCCATTACCT
ACACCATCAAGGAGTTCGGCGCGCTGCTGTACGCCACCATCATGACCATT
CGCCAATTCTTGTCTGTGTTCGTGTCCAACCTTCTCTTCCGCCACGGAAT
GACCGGAATGCAGTGGCTTGGCGCCGCCACAGTCTTCGGCGCCCTCTTCT
ACAAGACCTACGCAAAGGCCAACAAGCCAAAGACAGGGCCCAAGACCGAC
GCTCCGCTCGAGGAGAAGGCTACTATTGTACAGACTCCAGCAAAGTAA

Coding sequence (CDS) from alignment at ScGOVlb_425:1217084..1218181+

>Gvermi12723.t1 ID=Gvermi12723.t1|Name=Gvermi12723.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1098bp|location=Sequence derived from alignment at ScGOVlb_425:1217084..1218181+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCGACAAAGCAGTGCCCATGGAggaaccggagcccacgccggcgcc
gcagccggTCGGCATCTGGAAGTACCTCCCGTCCCCGCGCGTCATGATGT
GCGTCGTCGGCATCATCGGTTCGCTCATGCTGTACGCCTTGTTGCAGGAA
CGAATCATGACCAAGCCCTACACCAATGGATCCGAGCAAGACGGCGAAGA
GGGCGAGTACTTCAAGAACTCGCTCGTGCTCGTCTTTGCCAATCGCTTTT
CCGCCGCGATTGTCGCCGCTTGCATTTTGCTCGCAAAGGGCGACTTCTCC
GAGCTGCGAAACAAGGCCCCGCTCTACAAGTACTTCATGATCAGCGTCAG
CAACGTCATTGCCACCAGCTGCCAGTACGAGGCGCTCAAGTGGGTCACGT
TGCCCACGCAGACCCTGGCCAAGTGCGCCAAGATGATTCCCGTCATGATC
TGGGGCACGTTCATGTCCGGCAAGCGCTACGGCCCCGTCGAGTACGGTGT
GGCCGTCTTCGTCGCCCTGGGGTGCACCGTCTTCCTCTTGTCTGGAAACA
TCAAGGCCAAGAAGGCCTCCGATGAGGATTCCTACTACGGCCTTTTGCTC
ATGCTTGGCTACCTTGCCTTCGACGGCTTTACCTCCACCTTTCAGGAGAA
ACTCTTTGCCGGCTACCAGATGACCATCTACAACCAGATGCTTTACGTCA
ACATGTGTTCGGGGCTCATGAGCATCTGCTTCTTGGTCGGATCGGGCAAG
CTCTTTGAGTCCCTCGCTTTCCTCCTCAAGTATCCCACCGTCGTTGGAGA
CATGGCTGTGCTGTCTTTCTCGGCCGTGTCGGGCCAGTTTGCCATTACCT
ACACCATCAAGGAGTTCGGCGCGCTGCTGTACGCCACCATCATGACCATT
CGCCAATTCTTGTCTGTGTTCGTGTCCAACCTTCTCTTCCGCCACGGAAT
GACCGGAATGCAGTGGCTTGGCGCCGCCACAGTCTTCGGCGCCCTCTTCT
ACAAGACCTACGCAAAGGCCAACAAGCCAAAGACAGGGCCCAAGACCGAC
GCTCCGCTCGAGGAGAAGGCTACTATTGTACAGACTCCAGCAAAGTAA