Gvermi12704.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12704.t1
Unique NameGvermi12704.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length252
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1076608..1077363 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702974.1
Preferred nameUQCRFS1
PFAMsRieske,UCR_TM,Ubiq-Cytc-red_N
Max annot lvl2759|Eukaryota
KEGG koko:K00411,ko:K00413
KEGG Pathwayko00190,ko01100,ko02020,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map02020,map04260,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00151,M00152
GOsGO:0001932,GO:0001933,GO:0001934,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005750,GO:0005751,GO:0006091,GO:0006119,GO:0006122,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0008121,GO:0008150,GO:0008152,GO:0009055,GO:0009060,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009266,GO:0009408,GO:0009628,GO:0009719,GO:0009725,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010468,GO:0010562,GO:0010563,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0015980,GO:0016020,GO:0016310,GO:0016491,GO:0016679,GO:0016681,GO:0017144,GO:0019220,GO:0019222,GO:0019637,GO:0019693,GO:0019866,GO:0022900,GO:0022904,GO:0031090,GO:0031323,GO:0031324,GO:0031325,GO:0031399,GO:0031400,GO:0031401,GO:0031966,GO:0031967,GO:0031975,GO:0032268,GO:0032269,GO:0032270,GO:0032991,GO:0034641,GO:0042221,GO:0042325,GO:0042326,GO:0042327,GO:0042493,GO:0042773,GO:0042775,GO:0043167,GO:0043169,GO:0043209,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044877,GO:0045275,GO:0045277,GO:0045333,GO:0045936,GO:0045937,GO:0046034,GO:0046483,GO:0046677,GO:0046872,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048580,GO:0048582,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051248,GO:0055086,GO:0055114,GO:0060255,GO:0061062,GO:0061063,GO:0065007,GO:0070069,GO:0070469,GO:0071704,GO:0072521,GO:0080090,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901360,GO:1901564,GO:1902494,GO:1990204,GO:2000026
Evalue8.79e-85
EggNOG OGsCOG0723@1|root,KOG1671@2759|Eukaryota
EC1.10.2.2
Descriptionoxidoreductase activity, acting on diphenols and related substances as donors
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12704Gvermi12704Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1076608..1077363 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12704.t1.stop1Gvermi12704.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1076608..1076610 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12704.t1.CDS1Gvermi12704.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1076608..1077363 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12704.t1.exon1Gvermi12704.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1076608..1077363 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12704.t1.start1Gvermi12704.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1077361..1077363 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12704.t1Gvermi12704.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1076608..1077363 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12704.t1 ID=Gvermi12704.t1|Name=Gvermi12704.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=252bp
MSMLTRFGAAARRLAANPSSLPRNAPSLGLRALATTPPTVANAGTLGAQT
ASSELVAPRGPGALPVGYIDDYHNHPHRFMPGDPTKRAFTYMVLGTTKFI
AASAVRVLILKLIYTMSASADVLAKGSVEVELGAIPLGESATIKWRGKPV
FIRHRTDTEIAKAAEDDDKELRHPEADIDRVQKPEWLVVLGVCTHLGCVP
IANAGDYHGWFCPCHGSHYDLSGRIRKGPAPLNLDVPTYRFEEDDTKLIL
G*
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spliced messenger RNA

>Gvermi12704.t1 ID=Gvermi12704.t1|Name=Gvermi12704.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=756bp|location=Sequence derived from alignment at ScGOVlb_425:1076608..1077363- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCATGCTGACTCGCTTCGGCGCCGCCGCGCGCCGGCTAGCCGCCAA
CCCGTCTTCGCTGCCTCGAAACGCCCCTTCCCTCGGGCTACGCGCGCTCG
CCACCACCCCGCCCACCGTCGCCAATGCCGGCACGCTCGGCGCGCAGACA
GCCTCTTCCGAGCTCGTCGCCCCCCGCGGACCCGGCGCTCTGCCTGTTGG
CTACATTGACGACTACCATAACCATCCGCATCGCTTCATGCCTGGCGATC
CCACCAAGCGCGCCTTCACGTACATGGTGCTTGGAACCACCAAGTTCATC
GCCGCTTCCGCGGTGCGCGTTCTTATCCTCAAGCTCATTTACACGATGTC
CGCCTCCGCTGATGTGCTCGCCAAGGGTTCGGTTGAAGTGGAACTGGGCG
CTATTCCGCTCGGAGAGTCCGCCACCATCAAGTGGAGAGGAAAGCCAGTT
TTCATCCGTCACAGAACAGACACCGAAATCGCCAAGGCAGCAGAAGATGA
TGATAAGGAGCTAAGGCACCCCGAAGCAGACATTGACCGCGTGCAGAAGC
CGGAGTGGCTTGTTGTGCTGGGCGTGTGTACTCATCTTGGTTGTGTCCCT
ATTGCAAATGCCGGCGATTATCACGGTTGGTTCTGCCCGTGCCACGGTTC
CCATTACGATCTCTCCGGTCGCATCCGTAAAGGACCCGCACCTCTTAACT
TAGACGTACCAACATACAGATTCGAGGAAGATGACACGAAGCTCATTTTG
GGATAA
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protein sequence of Gvermi12704.t1

>Gvermi12704.t1 ID=Gvermi12704.t1|Name=Gvermi12704.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=252bp
MSMLTRFGAAARRLAANPSSLPRNAPSLGLRALATTPPTVANAGTLGAQT
ASSELVAPRGPGALPVGYIDDYHNHPHRFMPGDPTKRAFTYMVLGTTKFI
AASAVRVLILKLIYTMSASADVLAKGSVEVELGAIPLGESATIKWRGKPV
FIRHRTDTEIAKAAEDDDKELRHPEADIDRVQKPEWLVVLGVCTHLGCVP
IANAGDYHGWFCPCHGSHYDLSGRIRKGPAPLNLDVPTYRFEEDDTKLIL
G*
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mRNA from alignment at ScGOVlb_425:1076608..1077363-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12704.t1 ID=Gvermi12704.t1|Name=Gvermi12704.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=756bp|location=Sequence derived from alignment at ScGOVlb_425:1076608..1077363- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCCATGCTGACTCGCTTCGGCGCCGCCGCGCGCCGGCTAGCCGCCAA
CCCGTCTTCGCTGCCTCGAAACGCCCCTTCCCTCGGGCTACGCGCGCTCG
CCACCACCCCGCCCACCGTCGCCAATGCCGGCACGCTCGGCGCGCAGACA
GCCTCTTCCGAGCTCGTCGCCCCCCGCGGACCCGGCGCTCTGCCTGTTGG
CTACATTGACGACTACCATAACCATCCGCATCGCTTCATGCCTGGCGATC
CCACCAAGCGCGCCTTCACGTACATGGTGCTTGGAACCACCAAGTTCATC
GCCGCTTCCGCGGTGCGCGTTCTTATCCTCAAGCTCATTTACACGATGTC
CGCCTCCGCTGATGTGCTCGCCAAGGGTTCGGTTGAAGTGGAACTGGGCG
CTATTCCGCTCGGAGAGTCCGCCACCATCAAGTGGAGAGGAAAGCCAGTT
TTCATCCGTCACAGAACAGACACCGAAATCGCCAAGGCAGCAGAAGATGA
TGATAAGGAGCTAAGGCACCCCGAAGCAGACATTGACCGCGTGCAGAAGC
CGGAGTGGCTTGTTGTGCTGGGCGTGTGTACTCATCTTGGTTGTGTCCCT
ATTGCAAATGCCGGCGATTATCACGGTTGGTTCTGCCCGTGCCACGGTTC
CCATTACGATCTCTCCGGTCGCATCCGTAAAGGACCCGCACCTCTTAACT
TAGACGTACCAACATACAGATTCGAGGAAGATGACACGAAGCTCATTTTG
GGATAA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1076608..1077363-

>Gvermi12704.t1 ID=Gvermi12704.t1|Name=Gvermi12704.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=756bp|location=Sequence derived from alignment at ScGOVlb_425:1076608..1077363- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCCATGCTGACTCGCTTCGGCGCCGCCGCGCGCCGGCTAGCCGCCAA
CCCGTCTTCGCTGCCTCGAAACGCCCCTTCCCTCGGGCTACGCGCGCTCG
CCACCACCCCGCCCACCGTCGCCAATGCCGGCACGCTCGGCGCGCAGACA
GCCTCTTCCGAGCTCGTCGCCCCCCGCGGACCCGGCGCTCTGCCTGTTGG
CTACATTGACGACTACCATAACCATCCGCATCGCTTCATGCCTGGCGATC
CCACCAAGCGCGCCTTCACGTACATGGTGCTTGGAACCACCAAGTTCATC
GCCGCTTCCGCGGTGCGCGTTCTTATCCTCAAGCTCATTTACACGATGTC
CGCCTCCGCTGATGTGCTCGCCAAGGGTTCGGTTGAAGTGGAACTGGGCG
CTATTCCGCTCGGAGAGTCCGCCACCATCAAGTGGAGAGGAAAGCCAGTT
TTCATCCGTCACAGAACAGACACCGAAATCGCCAAGGCAGCAGAAGATGA
TGATAAGGAGCTAAGGCACCCCGAAGCAGACATTGACCGCGTGCAGAAGC
CGGAGTGGCTTGTTGTGCTGGGCGTGTGTACTCATCTTGGTTGTGTCCCT
ATTGCAAATGCCGGCGATTATCACGGTTGGTTCTGCCCGTGCCACGGTTC
CCATTACGATCTCTCCGGTCGCATCCGTAAAGGACCCGCACCTCTTAACT
TAGACGTACCAACATACAGATTCGAGGAAGATGACACGAAGCTCATTTTG
GGATAA
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