Gvermi12659.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12659.t1
Unique NameGvermi12659.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length234
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:126782..128251 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12659Gvermi12659Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 126782..128251 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12659.t1Gvermi12659.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 126782..128251 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12659.t1.stop1Gvermi12659.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 126782..126784 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12659.t1.CDS1Gvermi12659.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 126782..126792 -
Gvermi12659.t1.CDS2Gvermi12659.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 127561..128251 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12659.t1.exon1Gvermi12659.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 126782..126792 -
Gvermi12659.t1.exon2Gvermi12659.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 127561..128251 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12659.t1.intron1Gvermi12659.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 126793..127560 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12659.t1.start1Gvermi12659.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 128249..128251 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12659.t1 ID=Gvermi12659.t1|Name=Gvermi12659.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=234bp
MLMIHRFMPSLLRLQLVLLSLLIFSCTQGVAIPVVWLGKRGWRVGGRGGD
GGAALAIGASVTGGFGVNAANGAAGLVIGDGSITGQFFNTALGGKGGAGA
AGDLAGDGGKGGDATAIGGSVNSDGSGSGGGGNAVANGAVGTVIGGGSIN
GVFSNTAVGGDGGSGSSGKNAGNGGDGGNALAIGGNVGGGSGDGGGGNTV
ANGAAGTVVGDGSINGKFTNTAVAGKGGDGVKA*
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spliced messenger RNA

>Gvermi12659.t1 ID=Gvermi12659.t1|Name=Gvermi12659.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=702bp|location=Sequence derived from alignment at ScGOVlb_425:126782..128251- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTAATGATACACCGCTTCATGCCCTCCTTACTTCGGTTGCAGCTGGT
GCTGCTGTCTCTACTTATTTTCTCATGCACCCAGGGAGTGGCTATTCCTG
TGGTCTGGCTGGGAAAAAGAGGATGGCGTGTGGGTGGCCGTGGTGGTGAC
GGCGGAGCTGCGCTTGCTATAGGCGCCTCTGTAACTGGTGGATTCGGCGT
CAACGCAGCGAATGGGGCCGCTGGGCTTGTGATTGGCGACGGAAGCATCA
CCGGCCAGTTCTTCAACACTGCATTGGGCGGAAAAGGCGGAGCCGGTGCT
GCCGGCGACCTCGCTGGCGACGGTGGAAAGGGCGGTGATGCCACAGCGAT
TGGAGGCAGCGTGAACAGCGATGGAAGCGGAAGCGGCGGTGGCGGTAACG
CGGTGGCAAACGGTGCCGTGGGTACCGTCATTGGTGGCGGCAGCATCAAT
GGAGTTTTCTCAAACACAGCAGTGGGCGGAGATGGCGGCAGTGGTTCCAG
CGGCAAGAATGCTGGTAATGGCGGCGATGGCGGTAACGCATTAGCCATTG
GCGGCAATGTGGGTGGGGGAAGCGGTGATGGCGGCGGTGGCAATACCGTA
GCGAATGGAGCTGCCGGCACGGTGGTGGGTGACGGTAGTATCAATGGAAA
ATTCACCAACACCGCGGTGGCTGGTAAAGGCGGCGATGGCGTGAAAGCCT
AA
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protein sequence of Gvermi12659.t1

>Gvermi12659.t1 ID=Gvermi12659.t1|Name=Gvermi12659.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=234bp
MLMIHRFMPSLLRLQLVLLSLLIFSCTQGVAIPVVWLGKRGWRVGGRGGD
GGAALAIGASVTGGFGVNAANGAAGLVIGDGSITGQFFNTALGGKGGAGA
AGDLAGDGGKGGDATAIGGSVNSDGSGSGGGGNAVANGAVGTVIGGGSIN
GVFSNTAVGGDGGSGSSGKNAGNGGDGGNALAIGGNVGGGSGDGGGGNTV
ANGAAGTVVGDGSINGKFTNTAVAGKGGDGVKA*
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mRNA from alignment at ScGOVlb_425:126782..128251-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12659.t1 ID=Gvermi12659.t1|Name=Gvermi12659.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1470bp|location=Sequence derived from alignment at ScGOVlb_425:126782..128251- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTAATGATACACCGCTTCATGCCCTCCTTACTTCGGTTGCAGCTGGT
GCTGCTGTCTCTACTTATTTTCTCATGCACCCAGGGAGTGGCTATTCCTG
TGGTCTGGCTGGGAAAAAGAGGATGGCGTGTGGGTGGCCGTGGTGGTGAC
GGCGGAGCTGCGCTTGCTATAGGCGCCTCTGTAACTGGTGGATTCGGCGT
CAACGCAGCGAATGGGGCCGCTGGGCTTGTGATTGGCGACGGAAGCATCA
CCGGCCAGTTCTTCAACACTGCATTGGGCGGAAAAGGCGGAGCCGGTGCT
GCCGGCGACCTCGCTGGCGACGGTGGAAAGGGCGGTGATGCCACAGCGAT
TGGAGGCAGCGTGAACAGCGATGGAAGCGGAAGCGGCGGTGGCGGTAACG
CGGTGGCAAACGGTGCCGTGGGTACCGTCATTGGTGGCGGCAGCATCAAT
GGAGTTTTCTCAAACACAGCAGTGGGCGGAGATGGCGGCAGTGGTTCCAG
CGGCAAGAATGCTGGTAATGGCGGCGATGGCGGTAACGCATTAGCCATTG
GCGGCAATGTGGGTGGGGGAAGCGGTGATGGCGGCGGTGGCAATACCGTA
GCGAATGGAGCTGCCGGCACGGTGGTGGGTGACGGTAGTATCAATGGAAA
ATTCACCAACACCGCGGTGGCTGGTAAAGGCGGCGATGGCGGTAATGGTG
TGTATGGCGGCAATGGTGGACGCGGTGGTGATGCAGTTGCGATAGGAGGC
AGTGTCGATGGCGGTGGTGGTGGCGGCGGCGGCGGCAACACGGTTGGGAA
CGGCGCGGCTGGCACTGTTATTGGTAACGGTAGCATCAATGGAGAATTCT
CTAACACCGCTATTGGAGGAAATGGTGGTCACGGGGGACACAGCAGCGGT
GGGCGGGGTGGTAACGGCGGAAATGGTGGTAATGCTGTTGCCATAGGTGG
CAGCGTGAGTGGCGACGGCGGCGGAGGAAATGTTGTAGGCAATGGTGCTG
CAGGTACTGTAGTTGGTGGCGGCAGCATCAATGGTCAGTTTGTTAACACA
GCGGTCGCTGGCGCCGGTGGTGATGGCGGTAAACCGAAGTAGAGCTCGCT
CATCCGTTCATTGGAATGGTGGGCTGCAAAATCGCTGTCCCGTTTCAATT
CTGGGCTTTTTGACCTAGAGGCAGATCTTCGGAAGGTAGCAATCATATCA
ATGAGTGAAAAGCAGAATGTTGCACAGTCGCTCCTGCACACGTAAAATCT
TTCCATTCGCTAGACTGACTTGCTACAGACTGGATGATGTTTCACGTTGG
AAACAACTGATGCTTGCTCGTGGGAAGACTTGTGCAATTCTATTTTGACA
AGGAACTATGTCGTGAGGACAAACCCCTAATTACTACAAATATTTTGATG
TCATCGTGTGATTCATCTTTCAATAAGCATTGATGATTATCGTTCATTTT
GCCATTCAGTGAAAGCCTAA
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Coding sequence (CDS) from alignment at ScGOVlb_425:126782..128251-

>Gvermi12659.t1 ID=Gvermi12659.t1|Name=Gvermi12659.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=702bp|location=Sequence derived from alignment at ScGOVlb_425:126782..128251- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTAATGATACACCGCTTCATGCCCTCCTTACTTCGGTTGCAGCTGGT
GCTGCTGTCTCTACTTATTTTCTCATGCACCCAGGGAGTGGCTATTCCTG
TGGTCTGGCTGGGAAAAAGAGGATGGCGTGTGGGTGGCCGTGGTGGTGAC
GGCGGAGCTGCGCTTGCTATAGGCGCCTCTGTAACTGGTGGATTCGGCGT
CAACGCAGCGAATGGGGCCGCTGGGCTTGTGATTGGCGACGGAAGCATCA
CCGGCCAGTTCTTCAACACTGCATTGGGCGGAAAAGGCGGAGCCGGTGCT
GCCGGCGACCTCGCTGGCGACGGTGGAAAGGGCGGTGATGCCACAGCGAT
TGGAGGCAGCGTGAACAGCGATGGAAGCGGAAGCGGCGGTGGCGGTAACG
CGGTGGCAAACGGTGCCGTGGGTACCGTCATTGGTGGCGGCAGCATCAAT
GGAGTTTTCTCAAACACAGCAGTGGGCGGAGATGGCGGCAGTGGTTCCAG
CGGCAAGAATGCTGGTAATGGCGGCGATGGCGGTAACGCATTAGCCATTG
GCGGCAATGTGGGTGGGGGAAGCGGTGATGGCGGCGGTGGCAATACCGTA
GCGAATGGAGCTGCCGGCACGGTGGTGGGTGACGGTAGTATCAATGGAAA
ATTCACCAACACCGCGGTGGCTGGTAAAGGCGGCGATGGCGTGAAAGCCT
AA
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