Gvermi12650.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12650.t1
Unique NameGvermi12650.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length514
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:3904..7285 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12650Gvermi12650Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 3904..7285 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12650.t1Gvermi12650.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 3904..7285 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12650.t1.CDS1Gvermi12650.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 3904..4182 -
Gvermi12650.t1.CDS2Gvermi12650.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 4261..4406 -
Gvermi12650.t1.CDS3Gvermi12650.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 6170..7285 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12650.t1.exon1Gvermi12650.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 3904..4182 -
Gvermi12650.t1.exon2Gvermi12650.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 4261..4406 -
Gvermi12650.t1.exon3Gvermi12650.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 6170..7285 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12650.t1.intron1Gvermi12650.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 4183..4260 -
Gvermi12650.t1.intron2Gvermi12650.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 4407..6169 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12650.t1.start1Gvermi12650.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 7283..7285 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12650.t1 ID=Gvermi12650.t1|Name=Gvermi12650.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=514bp
MIEIPLRSGIVNAVLEVSLVLIVCPVWCSALINVVNKNIFHRAKNGYGVR
VGEGIPSLFRPVHLLRTRAAGNKLLLLGELFITVIIFWLELGVNGKTQLL
YATETKYVLNGATFPDVLPNAKVSHLEPIEGLLSQSRSCFRRVRPNTYEL
YGLAYTSPQNFERDNSRVFGFNQSICLDPESVQSSVGIRFVADYDSIIHS
YEMNTRRFKVHTLPGTVVEGVLEGTCEASLYGQNSFTVFGASSWFGRKMV
TASRLKRDQFMLEFGGLDTLDDKTDSNNNSTIVSDYGSRSCAHLNYTRMT
RRDFSVNITTMNTELDVTSLARSMSVFSADFPTLTVYTSFNAVDLMVLFF
FSGDVDSDADTQQRIGQFQRMQRAVNLQGALMEGSRAEVCQDADEESDEE
VIGVPVVDLEQMLEEQEVELKGSAYCYGNVSRMSPSEKRKQRLSKEADAA
KEKTPKEFWNDMIRDTLARHPDYFTSENAKLKDECITAKGKIGYPGLKIT
PENCLDLQDVYMLR
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spliced messenger RNA

>Gvermi12650.t1 ID=Gvermi12650.t1|Name=Gvermi12650.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1541bp|location=Sequence derived from alignment at ScGOVlb_425:3904..7285- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCGAGATTCCGCTTCGCAGCGGTATAGTCAACGCCGTGCTAGAGGT
GTCGCTCGTTCTCATCGTGTGTCCCGTGTGGTGCAGCGCCCTCATCAACG
TAGTCAACAAGAACATATTCCATAGAGCCAAGAACGGCTACGGCGTTCGG
GTGGGCGAAGGCATTCCAAGCCTGTTCAGACCGGTCCATCTCCTGCGCAC
ACGCGCCGCGGGAAACAAATTGTTGCTGCTTGGTGAGCTTTTCATCACCG
TCATCATCTTCTGGCTCGAGCTCGGCGTCAACGGAAAAACCCAACTTCTC
TACGCCACGGAGACAAAGTATGTTCTCAACGGCGCCACCTTTCCAGATGT
GCTTCCAAACGCTAAAGTGTCCCACCTCGAACCGATTGAAGGGCTCCTCA
GCCAAAGCCGGTCCTGCTTTCGACGGGTACGCCCCAATACCTACGAACTG
TACGGCCTGGCGTACACCAGTCCGCAAAACTTTGAGAGAGACAACTCTCG
GGTGTTCGGTTTCAACCAGTCCATTTGTCTGGATCCTGAAAGCGTACAGT
CTAGCGTGGGAATTCGATTTGTCGCCGATTATGATTCAATAATCCACTCA
TACGAAATGAATACCAGACGATTCAAGGTACACACCTTACCGGGAACTGT
TGTTGAAGGCGTCTTGGAAGGCACCTGTGAGGCTTCCTTGTATGGTCAAA
ACAGCTTTACAGTCTTCGGTGCCTCTTCGTGGTTCGGCAGAAAAATGGTG
ACGGCATCAAGGCTGAAAAGAGATCAGTTCATGCTGGAATTCGGAGGACT
TGACACTCTCGACGACAAAACGGATTCGAACAACAATTCAACTATCGTGT
CCGATTATGGCTCCCGTTCCTGTGCTCACCTGAACTACACGCGCATGACT
CGCCGGGATTTCAGCGTCAATATCACGACCATGAACACCGAACTTGATGT
GACAAGTTTGGCAAGATCTATGTCTGTATTTTCGGCCGATTTTCCCACTT
TGACGGTTTATACATCGTTCAACGCCGTCGATTTGATGGTATTATTTTTC
TTCTCAGGCGACGTTGATTCCGATGCGGATACGCAACAGAGAATTGGGCA
GTTCCAGCGGATGCAGAGGGCTGTCAATCTACAAGGAGCACTGATGGAAG
GATCGAGAGCAGAAGTGTGCCAAGATGCTGATGAAGAGAGTGACGAAGAG
GTAATTGGAGTTCCGGTTGTTGATCTCGAGCAAATGCTTGAGGAACAAGA
GGTAGAATTGAAAGGCTCAGCATATTGTTATGGGAATGTGAGCAGGATGT
CCCCTTCCGAGAAGCGAAAGCAGCGCTTGAGTAAGGAAGCGGATGCGGCG
AAGGAGAAAACGCCGAAGGAGTTTTGGAATGACATGATCCGGGACACCCT
GGCAAGACACCCTGATTACTTCACGAGCGAAAATGCGAAGCTGAAGGATG
AATGCATCACTGCTAAAGGGAAAATTGGCTATCCTGGTTTGAAGATCACC
CCGGAGAACTGTCTTGATCTCCAGGATGTGTACATGCTCCG
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protein sequence of Gvermi12650.t1

>Gvermi12650.t1 ID=Gvermi12650.t1|Name=Gvermi12650.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=514bp
MIEIPLRSGIVNAVLEVSLVLIVCPVWCSALINVVNKNIFHRAKNGYGVR
VGEGIPSLFRPVHLLRTRAAGNKLLLLGELFITVIIFWLELGVNGKTQLL
YATETKYVLNGATFPDVLPNAKVSHLEPIEGLLSQSRSCFRRVRPNTYEL
YGLAYTSPQNFERDNSRVFGFNQSICLDPESVQSSVGIRFVADYDSIIHS
YEMNTRRFKVHTLPGTVVEGVLEGTCEASLYGQNSFTVFGASSWFGRKMV
TASRLKRDQFMLEFGGLDTLDDKTDSNNNSTIVSDYGSRSCAHLNYTRMT
RRDFSVNITTMNTELDVTSLARSMSVFSADFPTLTVYTSFNAVDLMVLFF
FSGDVDSDADTQQRIGQFQRMQRAVNLQGALMEGSRAEVCQDADEESDEE
VIGVPVVDLEQMLEEQEVELKGSAYCYGNVSRMSPSEKRKQRLSKEADAA
KEKTPKEFWNDMIRDTLARHPDYFTSENAKLKDECITAKGKIGYPGLKIT
PENCLDLQDVYMLR
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mRNA from alignment at ScGOVlb_425:3904..7285-

Legend: polypeptideCDSexonstart_codonintron
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12650.t1 ID=Gvermi12650.t1|Name=Gvermi12650.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=3382bp|location=Sequence derived from alignment at ScGOVlb_425:3904..7285- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATCGAGATTCCGCTTCGCAGCGGTATAGTCAACGCCGTGCTAGAGGT
GTCGCTCGTTCTCATCGTGTGTCCCGTGTGGTGCAGCGCCCTCATCAACG
TAGTCAACAAGAACATATTCCATAGAGCCAAGAACGGCTACGGCGTTCGG
GTGGGCGAAGGCATTCCAAGCCTGTTCAGACCGGTCCATCTCCTGCGCAC
ACGCGCCGCGGGAAACAAATTGTTGCTGCTTGGTGAGCTTTTCATCACCG
TCATCATCTTCTGGCTCGAGCTCGGCGTCAACGGAAAAACCCAACTTCTC
TACGCCACGGAGACAAAGTATGTTCTCAACGGCGCCACCTTTCCAGATGT
GCTTCCAAACGCTAAAGTGTCCCACCTCGAACCGATTGAAGGGCTCCTCA
GCCAAAGCCGGTCCTGCTTTCGACGGGTACGCCCCAATACCTACGAACTG
TACGGCCTGGCGTACACCAGTCCGCAAAACTTTGAGAGAGACAACTCTCG
GGTGTTCGGTTTCAACCAGTCCATTTGTCTGGATCCTGAAAGCGTACAGT
CTAGCGTGGGAATTCGATTTGTCGCCGATTATGATTCAATAATCCACTCA
TACGAAATGAATACCAGACGATTCAAGGTACACACCTTACCGGGAACTGT
TGTTGAAGGCGTCTTGGAAGGCACCTGTGAGGCTTCCTTGTATGGTCAAA
ACAGCTTTACAGTCTTCGGTGCCTCTTCGTGGTTCGGCAGAAAAATGGTG
ACGGCATCAAGGCTGAAAAGAGATCAGTTCATGCTGGAATTCGGAGGACT
TGACACTCTCGACGACAAAACGGATTCGAACAACAATTCAACTATCGTGT
CCGATTATGGCTCCCGTTCCTGTGCTCACCTGAACTACACGCGCATGACT
CGCCGGGATTTCAGCGTCAATATCACGACCATGAACACCGAACTTGATGT
GACAAGTTTGGCAAGATCTATGTCTGTATTTTCGGCCGATTTTCCCACTT
TGACGGTTTATACATCGTTCAACGCCGTCGATTTGATGGTATTATTTTTC
TTCTCAGGCGACGTTGATTCCGATGCGGATACGCAACAGAGAATTGGGCA
GTTCCAGCGGATGCAGGTAAACATCCTGCAGGGGGAGCGAGAAGTAACGG
AGGTCACGATGCAGTCAATGATTTTAGCCCTTGTCGTGATAGCGGGGCTT
CTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNGTTGCTGCGGTTCTATGAACAGTATCAGTTATTCACAAACAAACCC
CATTGATAGAGAGCAATAGAATACGTGGTTCCTCAAACATTGAACATGAA
CACAGCACTTAAAGTACGGACTACTTAATTTCAGCCATATGTAGTCTTTA
CATTCCCTAGACGACCTTTTTGAATTGCAGCAAATGTGTTTTTGTAGCTT
GTGGAATATTTTGTTTTTTTTAAAGATATGGAATAAAAAATAAGCAGCAG
GAAGAGAAAAAACACCGTCCTGAATAATAATTGTAGCATATCTACATTGA
AGGGCAACGATGTCTTTGGAACTCTTTTCAGCGATTAAGTCCCATGATAT
CATCATAGAGTAGTAACGACAACTGGTTCTAAGTGTGCACTAAGTACAAA
TAAGAAAACCATTTGAAGCCAAATATACCACAAATGAGGCTCATATATAT
TGTTTACTTCGTTTACGAAGCATATTTGTTGCATTAATTGAATCAAGCAT
TTACAAGATACTCTTATTACAGTGTTCATCCGGAATATGGGTTTGCGCTT
GGTTTTGTGGAGCGTAAGTTAGCGCTTGGTTCCGACAGGAAACGTTAATT
GTTTGATGCAATCACTGTATGTACGATTTTTGCACCGCAAAGGGGCGACG
AAGCGCTGCGCGTTACGTATGAGGATTTTTCGACACTGTCAATATCTGGC
TAAATTTAATGCAAATCAAGATCGGCCCAAAAACCATGCAAAATTATTAA
AATATCTAGATTTGCAACCCGCGTTTGCGCTTGGTTCCGTTTCGTTTTTG
ACAAGTGCGTGTCCTGCACGCGCGTGGCACGCGCACGGCGTGTGCGCTAC
GTAAGCCTGTGCATTTGCCGCCATGTTATGGGTCATGTGGGGTGCCGTGG
CGCTTGGTTTTAACCAGGAAACGTCAGATTGCGCTTGGTTACCAAGGAAA
TGATCCGCCAGCAAGGTATTTGCCGTAACTAAACGTAGGAATCCAATAAC
TGGCATGTTGGGGAACCTAAGGAATACTTGTACGTGAAAAATCCATCAAG
AAGGAACCCCATAGGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNAGATGAATGCCCTAAGAAGAAACGGTTCTGTAT
CTCGCAGTTAAGCCAGTCGAAGGACGTTCCGGAGAGAACAACGAGAAGAG
TGTGTGGAATTGAAGTTGCGCCCCATAACTCGGACGTGGACGTGGACGCG
GTTGAATCGGATGAGCAGACGGAACATGCTCACTGTGGGAATGCGAGTAC
TGGTCTCCGTCCGAACGTGTTGCAGAATCGTAAGAATAGTGGCGGCCAAG
AATCCAACAATGGACATGTAAGGCATCGTGTTCGTGAAATCGGTATCGGT
GAAGAGCGCGAGTGTGGCGATGATGAGCAAGAGTATCACGCATCGAGTGA
AGGTACTAGCTGCTTGATTGGCCTGTTGGGGGATATTGGTGATAATGCCC
GAAGTTACTCGTGCGCTACCGCCGCGCAGAGGGCTGTCAATCTACAAGGA
GCACTGATGGAAGGATCGAGAGCAGAAGTGTGCCAAGATGCTGATGAAGA
GAGTGACGAAGAGGTAATTGGAGTTCCGGTTGTTGATCTCGAGCAAATGC
TTGAGGAACAAGAGGTAGAATTGAAGTCGAGACACAATGCAGTATACGAA
AGGCGTGTGGACATCTACAGCGGCAAATTTCATCGCTCTCCGAACCGGAA
GAGAGGCTCAGCATATTGTTATGGGAATGTGAGCAGGATGTCCCCTTCCG
AGAAGCGAAAGCAGCGCTTGAGTAAGGAAGCGGATGCGGCGAAGGAGAAA
ACGCCGAAGGAGTTTTGGAATGACATGATCCGGGACACCCTGGCAAGACA
CCCTGATTACTTCACGAGCGAAAATGCGAAGCTGAAGGATGAATGCATCA
CTGCTAAAGGGAAAATTGGCTATCCTGGTTTGAAGATCACCCCGGAGAAC
TGTCTTGATCTCCAGGATGTGTACATGCTCCG
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Coding sequence (CDS) from alignment at ScGOVlb_425:3904..7285-

>Gvermi12650.t1 ID=Gvermi12650.t1|Name=Gvermi12650.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1541bp|location=Sequence derived from alignment at ScGOVlb_425:3904..7285- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATCGAGATTCCGCTTCGCAGCGGTATAGTCAACGCCGTGCTAGAGGT
GTCGCTCGTTCTCATCGTGTGTCCCGTGTGGTGCAGCGCCCTCATCAACG
TAGTCAACAAGAACATATTCCATAGAGCCAAGAACGGCTACGGCGTTCGG
GTGGGCGAAGGCATTCCAAGCCTGTTCAGACCGGTCCATCTCCTGCGCAC
ACGCGCCGCGGGAAACAAATTGTTGCTGCTTGGTGAGCTTTTCATCACCG
TCATCATCTTCTGGCTCGAGCTCGGCGTCAACGGAAAAACCCAACTTCTC
TACGCCACGGAGACAAAGTATGTTCTCAACGGCGCCACCTTTCCAGATGT
GCTTCCAAACGCTAAAGTGTCCCACCTCGAACCGATTGAAGGGCTCCTCA
GCCAAAGCCGGTCCTGCTTTCGACGGGTACGCCCCAATACCTACGAACTG
TACGGCCTGGCGTACACCAGTCCGCAAAACTTTGAGAGAGACAACTCTCG
GGTGTTCGGTTTCAACCAGTCCATTTGTCTGGATCCTGAAAGCGTACAGT
CTAGCGTGGGAATTCGATTTGTCGCCGATTATGATTCAATAATCCACTCA
TACGAAATGAATACCAGACGATTCAAGGTACACACCTTACCGGGAACTGT
TGTTGAAGGCGTCTTGGAAGGCACCTGTGAGGCTTCCTTGTATGGTCAAA
ACAGCTTTACAGTCTTCGGTGCCTCTTCGTGGTTCGGCAGAAAAATGGTG
ACGGCATCAAGGCTGAAAAGAGATCAGTTCATGCTGGAATTCGGAGGACT
TGACACTCTCGACGACAAAACGGATTCGAACAACAATTCAACTATCGTGT
CCGATTATGGCTCCCGTTCCTGTGCTCACCTGAACTACACGCGCATGACT
CGCCGGGATTTCAGCGTCAATATCACGACCATGAACACCGAACTTGATGT
GACAAGTTTGGCAAGATCTATGTCTGTATTTTCGGCCGATTTTCCCACTT
TGACGGTTTATACATCGTTCAACGCCGTCGATTTGATGGTATTATTTTTC
TTCTCAGGCGACGTTGATTCCGATGCGGATACGCAACAGAGAATTGGGCA
GTTCCAGCGGATGCAGAGGGCTGTCAATCTACAAGGAGCACTGATGGAAG
GATCGAGAGCAGAAGTGTGCCAAGATGCTGATGAAGAGAGTGACGAAGAG
GTAATTGGAGTTCCGGTTGTTGATCTCGAGCAAATGCTTGAGGAACAAGA
GGTAGAATTGAAAGGCTCAGCATATTGTTATGGGAATGTGAGCAGGATGT
CCCCTTCCGAGAAGCGAAAGCAGCGCTTGAGTAAGGAAGCGGATGCGGCG
AAGGAGAAAACGCCGAAGGAGTTTTGGAATGACATGATCCGGGACACCCT
GGCAAGACACCCTGATTACTTCACGAGCGAAAATGCGAAGCTGAAGGATG
AATGCATCACTGCTAAAGGGAAAATTGGCTATCCTGGTTTGAAGATCACC
CCGGAGAACTGTCTTGATCTCCAGGATGTGTACATGCTCCG
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