Gvermi12473.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12473.t1
Unique NameGvermi12473.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length202
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4995691..4996296 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707899.1
Preferred nameFCF1
PFAMsFcf1
Max annot lvl2759|Eukaryota
KEGG rclassRC00006,RC00868,RC00887
KEGG koko:K14566,ko:K19562
KEGG ReactionR03182,R03231
KEGG Pathwayko00780,ko01100,ko03008,map00780,map01100,map03008
KEGG ModuleM00123
GOsGO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030684,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:1901360,GO:1990904
Evalue2.49e-82
EggNOG OGsCOG1412@1|root,KOG3165@2759|Eukaryota
EC2.6.1.62,6.3.3.3
DescriptionRRNA-processing protein FCF1
COG categoryD
BRITEko00000,ko00001,ko00002,ko01000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12473Gvermi12473Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4995691..4996296 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12473.t1.start1Gvermi12473.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4995691..4995693 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12473.t1.CDS1Gvermi12473.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4995691..4996296 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12473.t1.exon1Gvermi12473.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4995691..4996296 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12473.t1.stop1Gvermi12473.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4996294..4996296 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12473.t1Gvermi12473.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4995691..4996296 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12473.t1 ID=Gvermi12473.t1|Name=Gvermi12473.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=202bp
MGNARKKRQRKYAEVKRLISPNDSRLKIKELSKQEAAPIVAKKSDKDILA
SSSAPSSMFFRFNPSLGPPFRILLDTNFINFSVANKIDVTRGMLNCLAAP
SIICISDCVIAELQKLPKKYSVALRIARDRRFKRLICTHKGTYADDCIMQ
RIAAHRIYIVATCDKDLKRRIRKVPGVPIMYISGHQYKVERLPETLAPTL
K*
back to top

spliced messenger RNA

>Gvermi12473.t1 ID=Gvermi12473.t1|Name=Gvermi12473.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=606bp|location=Sequence derived from alignment at ScGOVlb_3404:4995691..4996296+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGAACGCGAGAAAGAAACGCCAGCGGAAATACGCTGAAGTGAAGCG
TCTCATTTCACCAAACGACTCTCGACTCAAGATCAAAGAGCTCTCAAAAC
AAGAAGCAGCCCCAATTGTCGCCAAAAAGTCTGATAAGGATATCTTGGCA
AGCAGCTCTGCTCCATCATCAATGTTCTTCCGCTTTAACCCTTCGCTTGG
GCCACCTTTTAGAATTCTCTTGGATACAAATTTCATCAACTTTTCTGTCG
CGAATAAAATCGATGTGACTCGCGGAATGCTCAATTGCCTTGCTGCGCCC
TCCATAATCTGCATCTCGGACTGCGTTATAGCTGAACTGCAGAAGCTTCC
AAAGAAATATTCAGTTGCATTACGCATAGCGCGAGATCGACGCTTCAAAC
GATTGATTTGTACTCACAAAGGAACATACGCGGACGATTGCATTATGCAG
CGAATTGCCGCACATCGAATATACATCGTTGCTACCTGTGATAAGGATTT
AAAGAGGCGAATCAGGAAAGTCCCGGGAGTACCGATCATGTACATATCAG
GGCATCAGTACAAGGTTGAACGTCTCCCCGAAACTTTAGCTCCAACTCTG
AAGTAG
back to top

protein sequence of Gvermi12473.t1

>Gvermi12473.t1 ID=Gvermi12473.t1|Name=Gvermi12473.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=202bp
MGNARKKRQRKYAEVKRLISPNDSRLKIKELSKQEAAPIVAKKSDKDILA
SSSAPSSMFFRFNPSLGPPFRILLDTNFINFSVANKIDVTRGMLNCLAAP
SIICISDCVIAELQKLPKKYSVALRIARDRRFKRLICTHKGTYADDCIMQ
RIAAHRIYIVATCDKDLKRRIRKVPGVPIMYISGHQYKVERLPETLAPTL
K*
back to top

mRNA from alignment at ScGOVlb_3404:4995691..4996296+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12473.t1 ID=Gvermi12473.t1|Name=Gvermi12473.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=606bp|location=Sequence derived from alignment at ScGOVlb_3404:4995691..4996296+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGGAACGCGAGAAAGAAACGCCAGCGGAAATACGCTGAAGTGAAGCG
TCTCATTTCACCAAACGACTCTCGACTCAAGATCAAAGAGCTCTCAAAAC
AAGAAGCAGCCCCAATTGTCGCCAAAAAGTCTGATAAGGATATCTTGGCA
AGCAGCTCTGCTCCATCATCAATGTTCTTCCGCTTTAACCCTTCGCTTGG
GCCACCTTTTAGAATTCTCTTGGATACAAATTTCATCAACTTTTCTGTCG
CGAATAAAATCGATGTGACTCGCGGAATGCTCAATTGCCTTGCTGCGCCC
TCCATAATCTGCATCTCGGACTGCGTTATAGCTGAACTGCAGAAGCTTCC
AAAGAAATATTCAGTTGCATTACGCATAGCGCGAGATCGACGCTTCAAAC
GATTGATTTGTACTCACAAAGGAACATACGCGGACGATTGCATTATGCAG
CGAATTGCCGCACATCGAATATACATCGTTGCTACCTGTGATAAGGATTT
AAAGAGGCGAATCAGGAAAGTCCCGGGAGTACCGATCATGTACATATCAG
GGCATCAGTACAAGGTTGAACGTCTCCCCGAAACTTTAGCTCCAACTCTG
AAGTAG
back to top

Coding sequence (CDS) from alignment at ScGOVlb_3404:4995691..4996296+

>Gvermi12473.t1 ID=Gvermi12473.t1|Name=Gvermi12473.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=606bp|location=Sequence derived from alignment at ScGOVlb_3404:4995691..4996296+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGGAACGCGAGAAAGAAACGCCAGCGGAAATACGCTGAAGTGAAGCG
TCTCATTTCACCAAACGACTCTCGACTCAAGATCAAAGAGCTCTCAAAAC
AAGAAGCAGCCCCAATTGTCGCCAAAAAGTCTGATAAGGATATCTTGGCA
AGCAGCTCTGCTCCATCATCAATGTTCTTCCGCTTTAACCCTTCGCTTGG
GCCACCTTTTAGAATTCTCTTGGATACAAATTTCATCAACTTTTCTGTCG
CGAATAAAATCGATGTGACTCGCGGAATGCTCAATTGCCTTGCTGCGCCC
TCCATAATCTGCATCTCGGACTGCGTTATAGCTGAACTGCAGAAGCTTCC
AAAGAAATATTCAGTTGCATTACGCATAGCGCGAGATCGACGCTTCAAAC
GATTGATTTGTACTCACAAAGGAACATACGCGGACGATTGCATTATGCAG
CGAATTGCCGCACATCGAATATACATCGTTGCTACCTGTGATAAGGATTT
AAAGAGGCGAATCAGGAAAGTCCCGGGAGTACCGATCATGTACATATCAG
GGCATCAGTACAAGGTTGAACGTCTCCCCGAAACTTTAGCTCCAACTCTG
AAGTAG
back to top