Gvermi12467.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12467.t1
Unique NameGvermi12467.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length97
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4950445..4950735 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog573413.Spirs_3963
Preferred namecorA
PFAMsCorA
Max annot lvl203691|Spirochaetes
KEGG koko:K03284
KEGG TC1.A.35.1,1.A.35.3
Evalue9.88e-22
EggNOG OGsCOG0598@1|root,COG0598@2|Bacteria,2J6SS@203691|Spirochaetes
DescriptionMediates influx of magnesium ions
COG categoryP
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12467Gvermi12467Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4950445..4950735 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12467.t1.stop1Gvermi12467.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4950445..4950447 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12467.t1.CDS1Gvermi12467.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4950445..4950735 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12467.t1.exon1Gvermi12467.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4950445..4950735 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12467.t1.start1Gvermi12467.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4950733..4950735 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12467.t1Gvermi12467.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4950445..4950735 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12467.t1 ID=Gvermi12467.t1|Name=Gvermi12467.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=97bp
LHCAQSAELLAGVRDGTHALLEVLLAVHNNRMQETMQTLAVVTTMFVPLT
FLAGIEGMNFRHMPELNGRWSYAAFWALVLLLVLLQLAFFRRKRWI*
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spliced messenger RNA

>Gvermi12467.t1 ID=Gvermi12467.t1|Name=Gvermi12467.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=291bp|location=Sequence derived from alignment at ScGOVlb_3404:4950445..4950735- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGCACTGCGCGCAGAGCGCCGAGCTGCTGGCCGGCGTGCGCGACGGCAC
GCACGCGCTGCTCGAGGTGCTGCTGGCCGTGCACAACAACCGCATGCAGG
AGACCATGCAGACGCTGGCCGTCGTCACCACCATGTTCGTGCCGCTCACC
TTCCTGGCCGGCATCGAGGGCATGAACTTCCGCCACATGCCCGAGCTCAA
CGGCCGCTGGAGCTACGCCGCCTTCTGGGCGCTCGTGCTGCTGCTCGTGC
TGCTGCAGCTCGCCTTCTTCCGCCGCAAGCGCTGGATCTGA
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protein sequence of Gvermi12467.t1

>Gvermi12467.t1 ID=Gvermi12467.t1|Name=Gvermi12467.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=97bp
LHCAQSAELLAGVRDGTHALLEVLLAVHNNRMQETMQTLAVVTTMFVPLT
FLAGIEGMNFRHMPELNGRWSYAAFWALVLLLVLLQLAFFRRKRWI*
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mRNA from alignment at ScGOVlb_3404:4950445..4950735-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12467.t1 ID=Gvermi12467.t1|Name=Gvermi12467.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=291bp|location=Sequence derived from alignment at ScGOVlb_3404:4950445..4950735- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGCACTGCGCGCAGAGCGCCGAGCTGCTGGCCGGCGTGCGCGACGGCAC
GCACGCGCTGCTCGAGGTGCTGCTGGCCGTGCACAACAACCGCATGCAGG
AGACCATGCAGACGCTGGCCGTCGTCACCACCATGTTCGTGCCGCTCACC
TTCCTGGCCGGCATCGAGGGCATGAACTTCCGCCACATGCCCGAGCTCAA
CGGCCGCTGGAGCTACGCCGCCTTCTGGGCGCTCGTGCTGCTGCTCGTGC
TGCTGCAGCTCGCCTTCTTCCGCCGCAAGCGCTGGATCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4950445..4950735-

>Gvermi12467.t1 ID=Gvermi12467.t1|Name=Gvermi12467.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=291bp|location=Sequence derived from alignment at ScGOVlb_3404:4950445..4950735- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGCACTGCGCGCAGAGCGCCGAGCTGCTGGCCGGCGTGCGCGACGGCAC
GCACGCGCTGCTCGAGGTGCTGCTGGCCGTGCACAACAACCGCATGCAGG
AGACCATGCAGACGCTGGCCGTCGTCACCACCATGTTCGTGCCGCTCACC
TTCCTGGCCGGCATCGAGGGCATGAACTTCCGCCACATGCCCGAGCTCAA
CGGCCGCTGGAGCTACGCCGCCTTCTGGGCGCTCGTGCTGCTGCTCGTGC
TGCTGCAGCTCGCCTTCTTCCGCCGCAAGCGCTGGATCTGA
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