Gvermi12460.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12460.t1
Unique NameGvermi12460.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length262
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4925842..4926627 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog161934.XP_010679718.1
PFAMsCRAL_TRIO,CRAL_TRIO_N
Max annot lvl35493|Streptophyta
Evalue2.41e-43
EggNOG OGsKOG1470@1|root,KOG1470@2759|Eukaryota,37M33@33090|Viridiplantae,3G7C9@35493|Streptophyta
DescriptionRandom slug protein
COG categoryI
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12460Gvermi12460Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4925842..4926627 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12460.t1.start1Gvermi12460.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4925842..4925844 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12460.t1.CDS1Gvermi12460.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4925842..4926627 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12460.t1.exon1Gvermi12460.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4925842..4926627 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12460.t1.stop1Gvermi12460.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4926625..4926627 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12460.t1Gvermi12460.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4925842..4926627 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12460.t1 ID=Gvermi12460.t1|Name=Gvermi12460.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=262bp
MLSRLRKAYSSSPDPPLPSDPLEALKLLVESDAGNVSHSKFLTDATLKRY
LVARSDNPVKAFKQLSDTLSWRLSYQPQSLYDTYKHSLQHEAQTGKMYIL
PHPDCNGRAIIIMRPGLENSSDGDANIRYLVYTLERASLLSEQSGDGKFV
VIVDYFTGKISTSTCPSLSTMKETTHILQTHYPERLGGMMFYDAPSFFLA
LFKMIRPFIDPVTRDKLRFVKRGQSVAAPFLDWDSIPVEYGGKLEYQFEV
EKYFEPEQEIL*
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spliced messenger RNA

>Gvermi12460.t1 ID=Gvermi12460.t1|Name=Gvermi12460.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=786bp|location=Sequence derived from alignment at ScGOVlb_3404:4925842..4926627+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTATCTAGACTACGAAAGGCCTACTCGTCCTCTCCTGACCCGCCACT
TCCTTCAGATCCTCTGGAAGCTCTCAAACTTTTAGTTGAATCCGATGCTG
GAAATGTCTCTCACTCGAAATTTCTTACTGATGCTACTTTGAAGAGATAT
CTTGTGGCCCGAAGTGACAATCCTGTCAAGGCCTTCAAGCAACTGTCCGA
CACTTTGTCTTGGAGATTATCATACCAACCACAAAGTCTATATGATACGT
ATAAGCATTCTTTACAGCACGAAGCACAAACCGGAAAGATGTACATTTTG
CCGCATCCTGATTGTAACGGTAGAGCTATCATAATTATGAGACCTGGACT
CGAAAACTCTTCGGATGGAGATGCAAACATTAGATACCTTGTGTACACGC
TGGAACGAGCATCTCTTTTGTCTGAGCAGAGCGGTGATGGCAAGTTTGTC
GTCATAGTCGATTATTTCACGGGCAAGATTTCTACGTCAACTTGTCCTTC
CTTGTCGACCATGAAGGAAACCACCCACATTTTACAAACACATTACCCAG
AGCGGTTGGGCGGCATGATGTTCTATGACGCTCCTTCCTTCTTTCTTGCC
CTGTTCAAGATGATTCGCCCGTTTATTGACCCAGTGACGAGGGACAAGTT
GCGCTTTGTGAAGAGAGGGCAGAGTGTCGCAGCGCCGTTTTTGGATTGGG
ATTCGATTCCTGTCGAGTATGGTGGAAAGCTGGAGTACCAGTTTGAAGTC
GAAAAATATTTTGAACCTGAACAAGAAATATTGTAA
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protein sequence of Gvermi12460.t1

>Gvermi12460.t1 ID=Gvermi12460.t1|Name=Gvermi12460.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=262bp
MLSRLRKAYSSSPDPPLPSDPLEALKLLVESDAGNVSHSKFLTDATLKRY
LVARSDNPVKAFKQLSDTLSWRLSYQPQSLYDTYKHSLQHEAQTGKMYIL
PHPDCNGRAIIIMRPGLENSSDGDANIRYLVYTLERASLLSEQSGDGKFV
VIVDYFTGKISTSTCPSLSTMKETTHILQTHYPERLGGMMFYDAPSFFLA
LFKMIRPFIDPVTRDKLRFVKRGQSVAAPFLDWDSIPVEYGGKLEYQFEV
EKYFEPEQEIL*
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mRNA from alignment at ScGOVlb_3404:4925842..4926627+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12460.t1 ID=Gvermi12460.t1|Name=Gvermi12460.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=786bp|location=Sequence derived from alignment at ScGOVlb_3404:4925842..4926627+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTATCTAGACTACGAAAGGCCTACTCGTCCTCTCCTGACCCGCCACT
TCCTTCAGATCCTCTGGAAGCTCTCAAACTTTTAGTTGAATCCGATGCTG
GAAATGTCTCTCACTCGAAATTTCTTACTGATGCTACTTTGAAGAGATAT
CTTGTGGCCCGAAGTGACAATCCTGTCAAGGCCTTCAAGCAACTGTCCGA
CACTTTGTCTTGGAGATTATCATACCAACCACAAAGTCTATATGATACGT
ATAAGCATTCTTTACAGCACGAAGCACAAACCGGAAAGATGTACATTTTG
CCGCATCCTGATTGTAACGGTAGAGCTATCATAATTATGAGACCTGGACT
CGAAAACTCTTCGGATGGAGATGCAAACATTAGATACCTTGTGTACACGC
TGGAACGAGCATCTCTTTTGTCTGAGCAGAGCGGTGATGGCAAGTTTGTC
GTCATAGTCGATTATTTCACGGGCAAGATTTCTACGTCAACTTGTCCTTC
CTTGTCGACCATGAAGGAAACCACCCACATTTTACAAACACATTACCCAG
AGCGGTTGGGCGGCATGATGTTCTATGACGCTCCTTCCTTCTTTCTTGCC
CTGTTCAAGATGATTCGCCCGTTTATTGACCCAGTGACGAGGGACAAGTT
GCGCTTTGTGAAGAGAGGGCAGAGTGTCGCAGCGCCGTTTTTGGATTGGG
ATTCGATTCCTGTCGAGTATGGTGGAAAGCTGGAGTACCAGTTTGAAGTC
GAAAAATATTTTGAACCTGAACAAGAAATATTGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4925842..4926627+

>Gvermi12460.t1 ID=Gvermi12460.t1|Name=Gvermi12460.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=786bp|location=Sequence derived from alignment at ScGOVlb_3404:4925842..4926627+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTATCTAGACTACGAAAGGCCTACTCGTCCTCTCCTGACCCGCCACT
TCCTTCAGATCCTCTGGAAGCTCTCAAACTTTTAGTTGAATCCGATGCTG
GAAATGTCTCTCACTCGAAATTTCTTACTGATGCTACTTTGAAGAGATAT
CTTGTGGCCCGAAGTGACAATCCTGTCAAGGCCTTCAAGCAACTGTCCGA
CACTTTGTCTTGGAGATTATCATACCAACCACAAAGTCTATATGATACGT
ATAAGCATTCTTTACAGCACGAAGCACAAACCGGAAAGATGTACATTTTG
CCGCATCCTGATTGTAACGGTAGAGCTATCATAATTATGAGACCTGGACT
CGAAAACTCTTCGGATGGAGATGCAAACATTAGATACCTTGTGTACACGC
TGGAACGAGCATCTCTTTTGTCTGAGCAGAGCGGTGATGGCAAGTTTGTC
GTCATAGTCGATTATTTCACGGGCAAGATTTCTACGTCAACTTGTCCTTC
CTTGTCGACCATGAAGGAAACCACCCACATTTTACAAACACATTACCCAG
AGCGGTTGGGCGGCATGATGTTCTATGACGCTCCTTCCTTCTTTCTTGCC
CTGTTCAAGATGATTCGCCCGTTTATTGACCCAGTGACGAGGGACAAGTT
GCGCTTTGTGAAGAGAGGGCAGAGTGTCGCAGCGCCGTTTTTGGATTGGG
ATTCGATTCCTGTCGAGTATGGTGGAAAGCTGGAGTACCAGTTTGAAGTC
GAAAAATATTTTGAACCTGAACAAGAAATATTGTAA
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