Gvermi12449.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12449.t1
Unique NameGvermi12449.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length425
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4849478..4850805 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7918.ENSLOCP00000018873
Preferred nameslo
PFAMsBK_channel_a,Ion_trans,Ion_trans_2
Max annot lvl33208|Metazoa
KEGG koko:K04936
KEGG TC1.A.1.3.1,1.A.1.3.2,1.A.1.3.3
KEGG Pathwayko04022,ko04270,ko04911,ko04924,ko04970,ko04972,map04022,map04270,map04911,map04924,map04970,map04972
GOsGO:0000003,GO:0001505,GO:0003674,GO:0005215,GO:0005216,GO:0005227,GO:0005244,GO:0005249,GO:0005261,GO:0005267,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0006996,GO:0007010,GO:0007610,GO:0007617,GO:0007618,GO:0007619,GO:0007622,GO:0007623,GO:0007631,GO:0008049,GO:0008076,GO:0008150,GO:0008324,GO:0008582,GO:0009636,GO:0009653,GO:0009987,GO:0010033,GO:0010646,GO:0010648,GO:0010927,GO:0015075,GO:0015077,GO:0015079,GO:0015267,GO:0015269,GO:0015318,GO:0015672,GO:0016020,GO:0016021,GO:0016043,GO:0016545,GO:0019098,GO:0019953,GO:0022414,GO:0022607,GO:0022803,GO:0022832,GO:0022836,GO:0022838,GO:0022839,GO:0022843,GO:0022857,GO:0022890,GO:0023051,GO:0023057,GO:0030001,GO:0030016,GO:0030017,GO:0030029,GO:0030036,GO:0030154,GO:0030239,GO:0030534,GO:0031032,GO:0031224,GO:0031226,GO:0031430,GO:0031672,GO:0032501,GO:0032502,GO:0032504,GO:0032879,GO:0032989,GO:0032991,GO:0034220,GO:0034702,GO:0034703,GO:0034705,GO:0036477,GO:0040008,GO:0040011,GO:0042221,GO:0042493,GO:0042692,GO:0042755,GO:0042995,GO:0043005,GO:0043025,GO:0043050,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043292,GO:0044085,GO:0044087,GO:0044297,GO:0044422,GO:0044424,GO:0044425,GO:0044444,GO:0044449,GO:0044459,GO:0044464,GO:0044703,GO:0045202,GO:0045214,GO:0045433,GO:0045471,GO:0046677,GO:0046873,GO:0046928,GO:0048065,GO:0048149,GO:0048468,GO:0048511,GO:0048512,GO:0048519,GO:0048523,GO:0048609,GO:0048638,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050803,GO:0050804,GO:0050805,GO:0050807,GO:0050896,GO:0051046,GO:0051049,GO:0051128,GO:0051146,GO:0051179,GO:0051234,GO:0051239,GO:0051588,GO:0051704,GO:0051960,GO:0051963,GO:0055001,GO:0055002,GO:0055085,GO:0055120,GO:0060072,GO:0060179,GO:0060341,GO:0061061,GO:0065007,GO:0065008,GO:0070925,GO:0071804,GO:0071805,GO:0071840,GO:0071944,GO:0097305,GO:0097435,GO:0097458,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098797,GO:0099080,GO:0099081,GO:0099177,GO:0099512,GO:0120025,GO:1900073,GO:1900074,GO:1901700,GO:1902495,GO:1903530,GO:1904396,GO:1990351,GO:2000026
Evalue1.72e-26
EggNOG OGsKOG1420@1|root,KOG1420@2759|Eukaryota,38CH0@33154|Opisthokonta,3BEHD@33208|Metazoa,3CTJ6@33213|Bilateria,47ZBF@7711|Chordata,4927H@7742|Vertebrata,4A1RZ@7898|Actinopterygii
DescriptionPotassium large conductance calcium-activated channel, subfamily M, alpha member
COG categoryP
BRITEko00000,ko00001,ko04040
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12449Gvermi12449Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4845895..4850805 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12449.t1Gvermi12449.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4849478..4850805 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12449.t1.stop1Gvermi12449.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4849478..4849480 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12449.t1.CDS1Gvermi12449.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4849478..4849481 -
Gvermi12449.t1.CDS2Gvermi12449.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4849535..4850805 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12449.t1.exon1Gvermi12449.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4849478..4849481 -
Gvermi12449.t1.exon2Gvermi12449.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4849535..4850805 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12449.t1.intron1Gvermi12449.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 4849482..4849534 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12449.t1.start1Gvermi12449.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4850803..4850805 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12449.t1 ID=Gvermi12449.t1|Name=Gvermi12449.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=425bp
MTFSPPPWSDVAHLLQCGCYFYFAFFVLAAIFSYSYAIPLHIQPLFDLIF
IGILRRLDGPYSRVEGTFFGRISRGFALGVLRMFVSTIICILYVYSTYAG
YISPPLLFLQKCVAVTLFFNIFWKLVYATRPVSFVLGFEVIMDVFSLSSL
LMAKRTDWLNFSFLQAYVILSRYFQIEPTLEIYFMVKSSPFHRQLTRLAL
EFVVFIYVFASGLQLFEQLGEPWETLIGTTFDLTLANSFYFTVVTIFTVG
YGDFVPFTLLGRLWIIFIIVFGAYLVSRKIGQVVDVVSGLRRGLGSFVKT
EGTDHCVICGNVKWEYLKAFVLEFYGDDRNAKTKLVIICDQPNWSETVWI
NFFTSNIQYRDNVTYLEGSCVTRDDLIRAQVETSKAVFILNNQHNPDPYA
EDSETLKRILTIRSYTPNLPIYSI*
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spliced messenger RNA

>Gvermi12449.t1 ID=Gvermi12449.t1|Name=Gvermi12449.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1275bp|location=Sequence derived from alignment at ScGOVlb_3404:4849478..4850805- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTTTCTCACCACCCCCTTGGTCGGACGTTGCCCACTTGCTTCAATG
CGGCTGTTACTTTTACTTTGCGTTCTTTGTACTGGCGGCCATCTTCTCAT
ATTCCTATGCCATTCCTTTGCATATTCAACCTTTGTTTGACCTTATATTT
ATTGGCATACTGAGGCGGCTCGATGGCCCCTACTCGAGAGTCGAAGGCAC
TTTCTTCGGCAGAATCAGTAGGGGCTTTGCGCTCGGCGTGCTGCGAATGT
TCGTCTCAACCATTATATGTATTTTGTACGTCTATTCAACGTATGCCGGG
TATATCAGTCCGCCTCTCCTTTTCTTGCAGAAGTGTGTCGCCGTTACTCT
GTTCTTCAACATTTTTTGGAAGCTTGTTTACGCGACGCGTCCGGTTTCTT
TTGTTCTCGGATTTGAGGTCATCATGGATGTATTCAGTCTCTCTTCTCTG
CTTATGGCAAAACGTACCGACTGGCTCAACTTTTCCTTCCTCCAGGCTTA
TGTGATCCTTTCGCGCTATTTCCAGATAGAGCCCACGCTTGAAATTTACT
TCATGGTCAAGAGTTCCCCATTTCATCGGCAGCTTACGCGTTTGGCTCTC
GAGTTTGTCGTGTTCATTTATGTCTTTGCGTCAGGACTGCAACTTTTCGA
ACAACTTGGAGAACCATGGGAAACTTTGATCGGCACTACATTTGACTTGA
CTCTTGCAAACTCGTTCTATTTCACTGTTGTTACAATTTTTACCGTAGGC
TATGGTGATTTTGTTCCGTTTACTCTTTTGGGCCGACTATGGATTATCTT
CATCATTGTGTTTGGCGCATATCTTGTTTCTCGAAAAATTGGCCAGGTTG
TTGATGTCGTGTCGGGTTTGCGAAGAGGGTTGGGTTCTTTTGTGAAGACG
GAGGGAACTGATCATTGTGTTATATGCGGTAACGTAAAGTGGGAATATCT
CAAGGCGTTTGTGCTTGAGTTTTACGGAGACGATAGGAATGCGAAGACGA
AGCTTGTTATAATTTGTGATCAGCCCAATTGGTCCGAAACCGTGTGGATT
AACTTTTTTACTTCAAACATTCAGTATCGCGACAACGTCACATATCTTGA
AGGATCGTGTGTTACGCGCGATGACCTGATTAGGGCGCAGGTGGAGACGT
CGAAAGCTGTTTTCATACTCAACAACCAACATAATCCAGACCCCTATGCA
GAGGATTCTGAGACATTGAAGCGTATTTTAACTATTCGGTCTTACACTCC
GAATCTTCCGATTTATTCCATATGA
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protein sequence of Gvermi12449.t1

>Gvermi12449.t1 ID=Gvermi12449.t1|Name=Gvermi12449.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=425bp
MTFSPPPWSDVAHLLQCGCYFYFAFFVLAAIFSYSYAIPLHIQPLFDLIF
IGILRRLDGPYSRVEGTFFGRISRGFALGVLRMFVSTIICILYVYSTYAG
YISPPLLFLQKCVAVTLFFNIFWKLVYATRPVSFVLGFEVIMDVFSLSSL
LMAKRTDWLNFSFLQAYVILSRYFQIEPTLEIYFMVKSSPFHRQLTRLAL
EFVVFIYVFASGLQLFEQLGEPWETLIGTTFDLTLANSFYFTVVTIFTVG
YGDFVPFTLLGRLWIIFIIVFGAYLVSRKIGQVVDVVSGLRRGLGSFVKT
EGTDHCVICGNVKWEYLKAFVLEFYGDDRNAKTKLVIICDQPNWSETVWI
NFFTSNIQYRDNVTYLEGSCVTRDDLIRAQVETSKAVFILNNQHNPDPYA
EDSETLKRILTIRSYTPNLPIYSI*
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mRNA from alignment at ScGOVlb_3404:4849478..4850805-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12449.t1 ID=Gvermi12449.t1|Name=Gvermi12449.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1328bp|location=Sequence derived from alignment at ScGOVlb_3404:4849478..4850805- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTTTCTCACCACCCCCTTGGTCGGACGTTGCCCACTTGCTTCAATG
CGGCTGTTACTTTTACTTTGCGTTCTTTGTACTGGCGGCCATCTTCTCAT
ATTCCTATGCCATTCCTTTGCATATTCAACCTTTGTTTGACCTTATATTT
ATTGGCATACTGAGGCGGCTCGATGGCCCCTACTCGAGAGTCGAAGGCAC
TTTCTTCGGCAGAATCAGTAGGGGCTTTGCGCTCGGCGTGCTGCGAATGT
TCGTCTCAACCATTATATGTATTTTGTACGTCTATTCAACGTATGCCGGG
TATATCAGTCCGCCTCTCCTTTTCTTGCAGAAGTGTGTCGCCGTTACTCT
GTTCTTCAACATTTTTTGGAAGCTTGTTTACGCGACGCGTCCGGTTTCTT
TTGTTCTCGGATTTGAGGTCATCATGGATGTATTCAGTCTCTCTTCTCTG
CTTATGGCAAAACGTACCGACTGGCTCAACTTTTCCTTCCTCCAGGCTTA
TGTGATCCTTTCGCGCTATTTCCAGATAGAGCCCACGCTTGAAATTTACT
TCATGGTCAAGAGTTCCCCATTTCATCGGCAGCTTACGCGTTTGGCTCTC
GAGTTTGTCGTGTTCATTTATGTCTTTGCGTCAGGACTGCAACTTTTCGA
ACAACTTGGAGAACCATGGGAAACTTTGATCGGCACTACATTTGACTTGA
CTCTTGCAAACTCGTTCTATTTCACTGTTGTTACAATTTTTACCGTAGGC
TATGGTGATTTTGTTCCGTTTACTCTTTTGGGCCGACTATGGATTATCTT
CATCATTGTGTTTGGCGCATATCTTGTTTCTCGAAAAATTGGCCAGGTTG
TTGATGTCGTGTCGGGTTTGCGAAGAGGGTTGGGTTCTTTTGTGAAGACG
GAGGGAACTGATCATTGTGTTATATGCGGTAACGTAAAGTGGGAATATCT
CAAGGCGTTTGTGCTTGAGTTTTACGGAGACGATAGGAATGCGAAGACGA
AGCTTGTTATAATTTGTGATCAGCCCAATTGGTCCGAAACCGTGTGGATT
AACTTTTTTACTTCAAACATTCAGTATCGCGACAACGTCACATATCTTGA
AGGATCGTGTGTTACGCGCGATGACCTGATTAGGGCGCAGGTGGAGACGT
CGAAAGCTGTTTTCATACTCAACAACCAACATAATCCAGACCCCTATGCA
GAGGATTCTGAGACATTGAAGCGTATTTTAACTATTCGGTCTTACACTCC
GAATCTTCCGATTTATTCCATGTGCGCTCTTCGTGACTCGATGTTGCAGA
TCACTTTTGCATTGGAGCATGTAGATGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4849478..4850805-

>Gvermi12449.t1 ID=Gvermi12449.t1|Name=Gvermi12449.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1275bp|location=Sequence derived from alignment at ScGOVlb_3404:4849478..4850805- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTTTCTCACCACCCCCTTGGTCGGACGTTGCCCACTTGCTTCAATG
CGGCTGTTACTTTTACTTTGCGTTCTTTGTACTGGCGGCCATCTTCTCAT
ATTCCTATGCCATTCCTTTGCATATTCAACCTTTGTTTGACCTTATATTT
ATTGGCATACTGAGGCGGCTCGATGGCCCCTACTCGAGAGTCGAAGGCAC
TTTCTTCGGCAGAATCAGTAGGGGCTTTGCGCTCGGCGTGCTGCGAATGT
TCGTCTCAACCATTATATGTATTTTGTACGTCTATTCAACGTATGCCGGG
TATATCAGTCCGCCTCTCCTTTTCTTGCAGAAGTGTGTCGCCGTTACTCT
GTTCTTCAACATTTTTTGGAAGCTTGTTTACGCGACGCGTCCGGTTTCTT
TTGTTCTCGGATTTGAGGTCATCATGGATGTATTCAGTCTCTCTTCTCTG
CTTATGGCAAAACGTACCGACTGGCTCAACTTTTCCTTCCTCCAGGCTTA
TGTGATCCTTTCGCGCTATTTCCAGATAGAGCCCACGCTTGAAATTTACT
TCATGGTCAAGAGTTCCCCATTTCATCGGCAGCTTACGCGTTTGGCTCTC
GAGTTTGTCGTGTTCATTTATGTCTTTGCGTCAGGACTGCAACTTTTCGA
ACAACTTGGAGAACCATGGGAAACTTTGATCGGCACTACATTTGACTTGA
CTCTTGCAAACTCGTTCTATTTCACTGTTGTTACAATTTTTACCGTAGGC
TATGGTGATTTTGTTCCGTTTACTCTTTTGGGCCGACTATGGATTATCTT
CATCATTGTGTTTGGCGCATATCTTGTTTCTCGAAAAATTGGCCAGGTTG
TTGATGTCGTGTCGGGTTTGCGAAGAGGGTTGGGTTCTTTTGTGAAGACG
GAGGGAACTGATCATTGTGTTATATGCGGTAACGTAAAGTGGGAATATCT
CAAGGCGTTTGTGCTTGAGTTTTACGGAGACGATAGGAATGCGAAGACGA
AGCTTGTTATAATTTGTGATCAGCCCAATTGGTCCGAAACCGTGTGGATT
AACTTTTTTACTTCAAACATTCAGTATCGCGACAACGTCACATATCTTGA
AGGATCGTGTGTTACGCGCGATGACCTGATTAGGGCGCAGGTGGAGACGT
CGAAAGCTGTTTTCATACTCAACAACCAACATAATCCAGACCCCTATGCA
GAGGATTCTGAGACATTGAAGCGTATTTTAACTATTCGGTCTTACACTCC
GAATCTTCCGATTTATTCCATATGA
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