Gvermi12429.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12429.t1
Unique NameGvermi12429.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length464
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4699705..4701096 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12429Gvermi12429Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4699705..4701096 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12429.t1.start1Gvermi12429.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4699705..4699707 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12429.t1.CDS1Gvermi12429.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4699705..4701096 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12429.t1.exon1Gvermi12429.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4699705..4701096 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12429.t1.stop1Gvermi12429.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4701094..4701096 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12429.t1Gvermi12429.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4699705..4701096 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12429.t1 ID=Gvermi12429.t1|Name=Gvermi12429.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=464bp
MKLNRLIFIAQIWLLVVLASPFPERKLKAEISLSKTVRAGSCFAAFVTCP
STRVSSCAAGHLSTTACPGRKVVDNDNNLHNNLKDKGGEREYFLPLPTTG
TELTNIQSTGMTYALTYNALHPLLQGSRTYSPDGPPGWDELPPDGRQRGH
LWSKNMGGPGGFYLNVITMVNTTNGEMNNQFECKIKKAFEDMKLDKLSRV
FVTILVRYSRTTKVSKKIFLFADVEYHTSRGWVMEPWLGMEIKNRYQEKM
NRLFQDRTAVIKRASTKDTDDSSCLDQTTIISTLSFHPAMPSNNDWWTLS
RGSGSPTMELGGGEVWFTGKNQSTADASMTIASKTSYRVNGGIAFRFLLS
PYRFSSSETTLEFAGGIGLRFRSGASPGWYSFKAWTPVKKLATSAMTAGP
GWYDIHIVYTSTKVILWERGVKKFSLSTTIAPFFPFKATFTNSDKFSETD
FKISNVAIHQNLF*
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spliced messenger RNA

>Gvermi12429.t1 ID=Gvermi12429.t1|Name=Gvermi12429.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1392bp|location=Sequence derived from alignment at ScGOVlb_3404:4699705..4701096+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCTAAACAGACTCATATTCATCGCACAGATATGGCTCCTTGTCGT
CCTTGCCTCTCCGTTTCCCGAACGAAAGTTGAAGGCGGAAATTTCGTTGT
CGAAAACCGTCCGCGCCGGATCATGTTTTGCCGCCTTTGTCACATGCCCG
TCTACTCGTGTGTCGTCATGTGCAGCAGGCCATTTATCTACAACTGCATG
CCCAGGTCGCAAAGTGGTGGACAATGATAATAACCTGCACAACAATCTCA
AAGACAAAGGGGGAGAACGTGAGTATTTCCTTCCTTTGCCAACCACTGGA
ACTGAATTGACCAACATTCAGTCCACGGGTATGACATATGCCCTTACGTA
CAACGCCCTCCATCCTCTGCTTCAGGGGTCAAGGACTTACTCTCCAGATG
GCCCACCTGGATGGGATGAACTTCCTCCCGACGGCAGACAGCGCGGTCAT
CTCTGGTCAAAGAATATGGGTGGTCCAGGTGGATTCTACCTGAACGTTAT
CACGATGGTAAATACGACAAATGGTGAGATGAACAATCAATTTGAATGTA
AGATAAAAAAGGCTTTTGAGGACATGAAACTGGATAAGCTGTCCCGCGTA
TTTGTCACAATTTTGGTGCGATACAGCAGGACCACTAAAGTAAGCAAAAA
AATATTCTTATTCGCCGATGTTGAATACCACACCTCAAGAGGTTGGGTGA
TGGAACCGTGGCTAGGCATGGAGATCAAAAATAGGTATCAAGAAAAAATG
AATCGCCTGTTTCAGGATCGTACAGCGGTAATAAAACGCGCCAGCACAAA
GGACACAGATGATTCGTCATGTTTGGACCAGACGACAATAATCAGCACAT
TAAGTTTCCACCCAGCAATGCCAAGTAACAACGATTGGTGGACACTATCG
CGGGGTTCAGGATCGCCAACTATGGAACTAGGTGGCGGAGAGGTGTGGTT
CACGGGAAAGAATCAATCAACTGCTGATGCAAGCATGACGATCGCGTCAA
AGACCTCGTACAGAGTTAATGGGGGAATTGCATTCCGGTTTCTGCTATCG
CCATATCGTTTTTCCTCGAGCGAAACGACTTTAGAGTTTGCCGGGGGTAT
CGGTCTTCGATTCCGTTCTGGGGCGTCTCCTGGGTGGTACTCTTTTAAAG
CGTGGACGCCAGTGAAAAAATTGGCAACAAGTGCGATGACTGCAGGTCCT
GGATGGTATGACATTCATATAGTTTACACCAGTACAAAGGTGATTCTGTG
GGAAAGAGGCGTGAAGAAGTTTTCTTTGTCTACCACAATTGCGCCATTCT
TTCCATTCAAAGCAACTTTCACGAATTCAGATAAGTTCTCGGAAACTGAT
TTTAAAATTTCAAACGTAGCGATTCACCAGAATCTCTTCTGA
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protein sequence of Gvermi12429.t1

>Gvermi12429.t1 ID=Gvermi12429.t1|Name=Gvermi12429.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=464bp
MKLNRLIFIAQIWLLVVLASPFPERKLKAEISLSKTVRAGSCFAAFVTCP
STRVSSCAAGHLSTTACPGRKVVDNDNNLHNNLKDKGGEREYFLPLPTTG
TELTNIQSTGMTYALTYNALHPLLQGSRTYSPDGPPGWDELPPDGRQRGH
LWSKNMGGPGGFYLNVITMVNTTNGEMNNQFECKIKKAFEDMKLDKLSRV
FVTILVRYSRTTKVSKKIFLFADVEYHTSRGWVMEPWLGMEIKNRYQEKM
NRLFQDRTAVIKRASTKDTDDSSCLDQTTIISTLSFHPAMPSNNDWWTLS
RGSGSPTMELGGGEVWFTGKNQSTADASMTIASKTSYRVNGGIAFRFLLS
PYRFSSSETTLEFAGGIGLRFRSGASPGWYSFKAWTPVKKLATSAMTAGP
GWYDIHIVYTSTKVILWERGVKKFSLSTTIAPFFPFKATFTNSDKFSETD
FKISNVAIHQNLF*
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mRNA from alignment at ScGOVlb_3404:4699705..4701096+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12429.t1 ID=Gvermi12429.t1|Name=Gvermi12429.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1392bp|location=Sequence derived from alignment at ScGOVlb_3404:4699705..4701096+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGCTAAACAGACTCATATTCATCGCACAGATATGGCTCCTTGTCGT
CCTTGCCTCTCCGTTTCCCGAACGAAAGTTGAAGGCGGAAATTTCGTTGT
CGAAAACCGTCCGCGCCGGATCATGTTTTGCCGCCTTTGTCACATGCCCG
TCTACTCGTGTGTCGTCATGTGCAGCAGGCCATTTATCTACAACTGCATG
CCCAGGTCGCAAAGTGGTGGACAATGATAATAACCTGCACAACAATCTCA
AAGACAAAGGGGGAGAACGTGAGTATTTCCTTCCTTTGCCAACCACTGGA
ACTGAATTGACCAACATTCAGTCCACGGGTATGACATATGCCCTTACGTA
CAACGCCCTCCATCCTCTGCTTCAGGGGTCAAGGACTTACTCTCCAGATG
GCCCACCTGGATGGGATGAACTTCCTCCCGACGGCAGACAGCGCGGTCAT
CTCTGGTCAAAGAATATGGGTGGTCCAGGTGGATTCTACCTGAACGTTAT
CACGATGGTAAATACGACAAATGGTGAGATGAACAATCAATTTGAATGTA
AGATAAAAAAGGCTTTTGAGGACATGAAACTGGATAAGCTGTCCCGCGTA
TTTGTCACAATTTTGGTGCGATACAGCAGGACCACTAAAGTAAGCAAAAA
AATATTCTTATTCGCCGATGTTGAATACCACACCTCAAGAGGTTGGGTGA
TGGAACCGTGGCTAGGCATGGAGATCAAAAATAGGTATCAAGAAAAAATG
AATCGCCTGTTTCAGGATCGTACAGCGGTAATAAAACGCGCCAGCACAAA
GGACACAGATGATTCGTCATGTTTGGACCAGACGACAATAATCAGCACAT
TAAGTTTCCACCCAGCAATGCCAAGTAACAACGATTGGTGGACACTATCG
CGGGGTTCAGGATCGCCAACTATGGAACTAGGTGGCGGAGAGGTGTGGTT
CACGGGAAAGAATCAATCAACTGCTGATGCAAGCATGACGATCGCGTCAA
AGACCTCGTACAGAGTTAATGGGGGAATTGCATTCCGGTTTCTGCTATCG
CCATATCGTTTTTCCTCGAGCGAAACGACTTTAGAGTTTGCCGGGGGTAT
CGGTCTTCGATTCCGTTCTGGGGCGTCTCCTGGGTGGTACTCTTTTAAAG
CGTGGACGCCAGTGAAAAAATTGGCAACAAGTGCGATGACTGCAGGTCCT
GGATGGTATGACATTCATATAGTTTACACCAGTACAAAGGTGATTCTGTG
GGAAAGAGGCGTGAAGAAGTTTTCTTTGTCTACCACAATTGCGCCATTCT
TTCCATTCAAAGCAACTTTCACGAATTCAGATAAGTTCTCGGAAACTGAT
TTTAAAATTTCAAACGTAGCGATTCACCAGAATCTCTTCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4699705..4701096+

>Gvermi12429.t1 ID=Gvermi12429.t1|Name=Gvermi12429.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1392bp|location=Sequence derived from alignment at ScGOVlb_3404:4699705..4701096+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGCTAAACAGACTCATATTCATCGCACAGATATGGCTCCTTGTCGT
CCTTGCCTCTCCGTTTCCCGAACGAAAGTTGAAGGCGGAAATTTCGTTGT
CGAAAACCGTCCGCGCCGGATCATGTTTTGCCGCCTTTGTCACATGCCCG
TCTACTCGTGTGTCGTCATGTGCAGCAGGCCATTTATCTACAACTGCATG
CCCAGGTCGCAAAGTGGTGGACAATGATAATAACCTGCACAACAATCTCA
AAGACAAAGGGGGAGAACGTGAGTATTTCCTTCCTTTGCCAACCACTGGA
ACTGAATTGACCAACATTCAGTCCACGGGTATGACATATGCCCTTACGTA
CAACGCCCTCCATCCTCTGCTTCAGGGGTCAAGGACTTACTCTCCAGATG
GCCCACCTGGATGGGATGAACTTCCTCCCGACGGCAGACAGCGCGGTCAT
CTCTGGTCAAAGAATATGGGTGGTCCAGGTGGATTCTACCTGAACGTTAT
CACGATGGTAAATACGACAAATGGTGAGATGAACAATCAATTTGAATGTA
AGATAAAAAAGGCTTTTGAGGACATGAAACTGGATAAGCTGTCCCGCGTA
TTTGTCACAATTTTGGTGCGATACAGCAGGACCACTAAAGTAAGCAAAAA
AATATTCTTATTCGCCGATGTTGAATACCACACCTCAAGAGGTTGGGTGA
TGGAACCGTGGCTAGGCATGGAGATCAAAAATAGGTATCAAGAAAAAATG
AATCGCCTGTTTCAGGATCGTACAGCGGTAATAAAACGCGCCAGCACAAA
GGACACAGATGATTCGTCATGTTTGGACCAGACGACAATAATCAGCACAT
TAAGTTTCCACCCAGCAATGCCAAGTAACAACGATTGGTGGACACTATCG
CGGGGTTCAGGATCGCCAACTATGGAACTAGGTGGCGGAGAGGTGTGGTT
CACGGGAAAGAATCAATCAACTGCTGATGCAAGCATGACGATCGCGTCAA
AGACCTCGTACAGAGTTAATGGGGGAATTGCATTCCGGTTTCTGCTATCG
CCATATCGTTTTTCCTCGAGCGAAACGACTTTAGAGTTTGCCGGGGGTAT
CGGTCTTCGATTCCGTTCTGGGGCGTCTCCTGGGTGGTACTCTTTTAAAG
CGTGGACGCCAGTGAAAAAATTGGCAACAAGTGCGATGACTGCAGGTCCT
GGATGGTATGACATTCATATAGTTTACACCAGTACAAAGGTGATTCTGTG
GGAAAGAGGCGTGAAGAAGTTTTCTTTGTCTACCACAATTGCGCCATTCT
TTCCATTCAAAGCAACTTTCACGAATTCAGATAAGTTCTCGGAAACTGAT
TTTAAAATTTCAAACGTAGCGATTCACCAGAATCTCTTCTGA
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