Gvermi12415.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12415.t1
Unique Name	Gvermi12415.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	557

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:4647619..4649289 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	85681.XP_006442449.1
PFAMs	ANAPC3,TPR_1,TPR_10,TPR_16,TPR_2,TPR_3,TPR_8
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K03353
KEGG Pathway	ko04110,ko04111,ko04113,ko04114,ko04120,ko04914,ko05166,map04110,map04111,map04113,map04114,map04120,map04914,map05166
KEGG Module	M00389
GOs	GO:0006275,GO:0008150,GO:0009888,GO:0009889,GO:0010087,GO:0010556,GO:0010564,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0032502,GO:0032875,GO:0048856,GO:0050789,GO:0050794,GO:0051052,GO:0051171,GO:0051726,GO:0060255,GO:0065007,GO:0080090,GO:0090329,GO:2000112
Evalue	9.02e-51
EggNOG OGs	KOG1173@1\|root,KOG1173@2759\|Eukaryota,37HX4@33090\|Viridiplantae,3GCRF@35493\|Streptophyta
Description	Anaphase-promoting complex subunit
COG category	DO
BRITE	ko00000,ko00001,ko00002,ko01009,ko03036,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12415	Gvermi12415	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 4647619..4649289 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12415.t1.start1	Gvermi12415.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 4647619..4647621 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12415.t1.CDS1	Gvermi12415.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 4647619..4649289 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12415.t1.exon1	Gvermi12415.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 4647619..4649289 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12415.t1.stop1	Gvermi12415.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 4649287..4649289 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12415.t1	Gvermi12415.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 4647619..4649289 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:4647619..4649289+
coding sequence from alignment at ScGOVlb_3404:4647619..4649289+

mRNA sequence

>Gvermi12415.t1 ID=Gvermi12415.t1|Name=Gvermi12415.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=557bp
MREQEKQPSPSQSNTNRIMSHSPNSLLPSFQQKVSLYHQLGMHQTAIFYA
DKAASISSTPQQLIIQARLFFSLTQYRRALHILETNQLSSQHQTARLLAA
QCYFELRDYDACLSLLGDEQDVDSAISTLTLRGAPRELHAALCVLRARVH
ERLENPECALLWYKRAFRCDIFCVEAFEALSSAGLLPPPQAAKFVTESLS
DTSSTSQLHAHAVARKWISSYYTAYANHDVETPSSPPMNDNIDLTIVHAK
RKFVSLDFGSCLEHCRQVLRQDPHADKVLPMYLATLVELNERHELFVTAH
NLVDNSPKSAISWLAVGYHYLASGKPELARRFFQKCTSLDMRVAPAWIAI
GHAFGAQDESDQAMAAYRTVTRLFPGSQEPHLFMGMEYVRQGSLNQAATM
LRRAAEACPKDPAPVHELGVVMYRMGDHAAAASYFKEALTLWEAGETAND
LSRRSGKRAEAEEATLVNLGHCHRRLKDYSAAKRCYERALAVRPRSAGTC
GALGMTLHAMWDLEGAVAMYHRALRNNPEDANCSELLERALYDMFLVRPC
ASVDLP*

spliced messenger RNA

>Gvermi12415.t1 ID=Gvermi12415.t1|Name=Gvermi12415.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1671bp|location=Sequence derived from alignment at ScGOVlb_3404:4647619..4649289+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGAGAGCAAGAAAAGCAACCCTCACCGTCGCAATCCAACACCAATCG
CATCATGTCTCACTCACCCAACTCACTTCTACCTTCCTTCCAGCAAAAGG
TATCGCTGTACCATCAACTTGGAATGCACCAAACCGCCATCTTTTACGCC
GATAAAGCAGCCTCAATCTCGTCAACTCCGCAGCAGCTCATAATCCAGGC
CCGACTCTTCTTTTCGCTCACCCAGTACCGAAGGGCATTGCACATCCTGG
AAACAAACCAGCTGTCATCGCAGCACCAGACCGCCAGGCTGCTAGCCGCC
CAATGTTACTTTGAGCTCCGCGATTATGACGCCTGTCTGTCTTTGCTGGG
CGATGAACAAGATGTGGACAGCGCCATCTCCACGTTGACGCTGCGAGGAG
CTCCGCGCGAACTGCATGCCGCTCTGTGCGTTCTGCGCGCTCGAGTCCAC
GAACGTCTGGAGAATCCAGAGTGCGCCTTGCTGTGGTACAAGCGCGCCTT
TCGATGCGATATTTTCTGTGTCGAGGCCTTTGAAGCCCTCTCGAGTGCAG
GCTTGCTTCCCCCACCGCAGGCTGCAAAATTCGTCACGGAATCGCTCTCG
GACACCTCGTCAACATCTCAACTTCATGCCCACGCTGTGGCCCGAAAATG
GATTTCGTCCTACTATACCGCCTATGCCAACCACGATGTCGAAACGCCGT
CATCGCCTCCCATGAACGACAACATCGACTTGACCATTGTGCATGCGAAA
CGCAAATTCGTTTCATTAGATTTCGGCAGTTGTCTAGAGCACTGCCGCCA
GGTTTTGCGCCAAGACCCGCACGCTGACAAAGTGCTGCCAATGTATCTCG
CCACGTTGGTGGAACTGAATGAAAGGCACGAACTCTTTGTCACGGCTCAC
AATCTGGTCGACAACTCGCCAAAGTCTGCCATTAGCTGGCTTGCTGTTGG
CTACCATTACCTAGCCAGCGGCAAGCCCGAACTGGCGCGGCGTTTCTTCC
AGAAATGCACCTCGCTTGACATGCGAGTGGCGCCGGCGTGGATAGCGATT
GGCCATGCGTTTGGCGCTCAGGATGAGAGTGATCAAGCGATGGCTGCGTA
CCGAACCGTCACACGATTATTTCCTGGCTCGCAAGAACCTCACTTGTTCA
TGGGCATGGAGTACGTGCGTCAAGGCTCTCTGAATCAAGCCGCCACCATG
CTCCGCCGTGCGGCAGAAGCTTGCCCGAAAGACCCGGCCCCGGTGCATGA
GCTTGGCGTCGTCATGTACCGCATGGGAGACCATGCTGCCGCCGCGAGCT
ACTTCAAGGAAGCTTTGACACTTTGGGAGGCCGGAGAGACGGCGAACGAT
CTGTCGCGCAGAAGTGGCAAACGAGCGGAAGCAGAGGAGGCTACGCTCGT
TAACCTGGGTCATTGTCACCGACGGCTTAAAGACTACAGTGCGGCGAAGC
GGTGCTACGAGCGAGCGCTCGCTGTGCGTCCACGCAGCGCCGGTACTTGT
GGGGCTCTGGGAATGACCTTGCACGCCATGTGGGACTTGGAAGGCGCGGT
GGCCATGTATCATCGAGCACTACGGAACAATCCCGAGGATGCCAATTGTA
GCGAACTCCTGGAGCGGGCGCTCTATGACATGTTTTTAGTGAGACCTTGT
GCGAGCGTGGATTTGCCCTAG

protein sequence of Gvermi12415.t1

>Gvermi12415.t1 ID=Gvermi12415.t1|Name=Gvermi12415.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=557bp
MREQEKQPSPSQSNTNRIMSHSPNSLLPSFQQKVSLYHQLGMHQTAIFYA
DKAASISSTPQQLIIQARLFFSLTQYRRALHILETNQLSSQHQTARLLAA
QCYFELRDYDACLSLLGDEQDVDSAISTLTLRGAPRELHAALCVLRARVH
ERLENPECALLWYKRAFRCDIFCVEAFEALSSAGLLPPPQAAKFVTESLS
DTSSTSQLHAHAVARKWISSYYTAYANHDVETPSSPPMNDNIDLTIVHAK
RKFVSLDFGSCLEHCRQVLRQDPHADKVLPMYLATLVELNERHELFVTAH
NLVDNSPKSAISWLAVGYHYLASGKPELARRFFQKCTSLDMRVAPAWIAI
GHAFGAQDESDQAMAAYRTVTRLFPGSQEPHLFMGMEYVRQGSLNQAATM
LRRAAEACPKDPAPVHELGVVMYRMGDHAAAASYFKEALTLWEAGETAND
LSRRSGKRAEAEEATLVNLGHCHRRLKDYSAAKRCYERALAVRPRSAGTC
GALGMTLHAMWDLEGAVAMYHRALRNNPEDANCSELLERALYDMFLVRPC
ASVDLP*

mRNA from alignment at ScGOVlb_3404:4647619..4649289+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12415.t1 ID=Gvermi12415.t1|Name=Gvermi12415.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1671bp|location=Sequence derived from alignment at ScGOVlb_3404:4647619..4649289+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGAGAGCAAGAAAAGCAACCCTCACCGTCGCAATCCAACACCAATCG
CATCATGTCTCACTCACCCAACTCACTTCTACCTTCCTTCCAGCAAAAGG
TATCGCTGTACCATCAACTTGGAATGCACCAAACCGCCATCTTTTACGCC
GATAAAGCAGCCTCAATCTCGTCAACTCCGCAGCAGCTCATAATCCAGGC
CCGACTCTTCTTTTCGCTCACCCAGTACCGAAGGGCATTGCACATCCTGG
AAACAAACCAGCTGTCATCGCAGCACCAGACCGCCAGGCTGCTAGCCGCC
CAATGTTACTTTGAGCTCCGCGATTATGACGCCTGTCTGTCTTTGCTGGG
CGATGAACAAGATGTGGACAGCGCCATCTCCACGTTGACGCTGCGAGGAG
CTCCGCGCGAACTGCATGCCGCTCTGTGCGTTCTGCGCGCTCGAGTCCAC
GAACGTCTGGAGAATCCAGAGTGCGCCTTGCTGTGGTACAAGCGCGCCTT
TCGATGCGATATTTTCTGTGTCGAGGCCTTTGAAGCCCTCTCGAGTGCAG
GCTTGCTTCCCCCACCGCAGGCTGCAAAATTCGTCACGGAATCGCTCTCG
GACACCTCGTCAACATCTCAACTTCATGCCCACGCTGTGGCCCGAAAATG
GATTTCGTCCTACTATACCGCCTATGCCAACCACGATGTCGAAACGCCGT
CATCGCCTCCCATGAACGACAACATCGACTTGACCATTGTGCATGCGAAA
CGCAAATTCGTTTCATTAGATTTCGGCAGTTGTCTAGAGCACTGCCGCCA
GGTTTTGCGCCAAGACCCGCACGCTGACAAAGTGCTGCCAATGTATCTCG
CCACGTTGGTGGAACTGAATGAAAGGCACGAACTCTTTGTCACGGCTCAC
AATCTGGTCGACAACTCGCCAAAGTCTGCCATTAGCTGGCTTGCTGTTGG
CTACCATTACCTAGCCAGCGGCAAGCCCGAACTGGCGCGGCGTTTCTTCC
AGAAATGCACCTCGCTTGACATGCGAGTGGCGCCGGCGTGGATAGCGATT
GGCCATGCGTTTGGCGCTCAGGATGAGAGTGATCAAGCGATGGCTGCGTA
CCGAACCGTCACACGATTATTTCCTGGCTCGCAAGAACCTCACTTGTTCA
TGGGCATGGAGTACGTGCGTCAAGGCTCTCTGAATCAAGCCGCCACCATG
CTCCGCCGTGCGGCAGAAGCTTGCCCGAAAGACCCGGCCCCGGTGCATGA
GCTTGGCGTCGTCATGTACCGCATGGGAGACCATGCTGCCGCCGCGAGCT
ACTTCAAGGAAGCTTTGACACTTTGGGAGGCCGGAGAGACGGCGAACGAT
CTGTCGCGCAGAAGTGGCAAACGAGCGGAAGCAGAGGAGGCTACGCTCGT
TAACCTGGGTCATTGTCACCGACGGCTTAAAGACTACAGTGCGGCGAAGC
GGTGCTACGAGCGAGCGCTCGCTGTGCGTCCACGCAGCGCCGGTACTTGT
GGGGCTCTGGGAATGACCTTGCACGCCATGTGGGACTTGGAAGGCGCGGT
GGCCATGTATCATCGAGCACTACGGAACAATCCCGAGGATGCCAATTGTA
GCGAACTCCTGGAGCGGGCGCTCTATGACATGTTTTTAGTGAGACCTTGT
GCGAGCGTGGATTTGCCCTAG

Coding sequence (CDS) from alignment at ScGOVlb_3404:4647619..4649289+

>Gvermi12415.t1 ID=Gvermi12415.t1|Name=Gvermi12415.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1671bp|location=Sequence derived from alignment at ScGOVlb_3404:4647619..4649289+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGAGAGCAAGAAAAGCAACCCTCACCGTCGCAATCCAACACCAATCG
CATCATGTCTCACTCACCCAACTCACTTCTACCTTCCTTCCAGCAAAAGG
TATCGCTGTACCATCAACTTGGAATGCACCAAACCGCCATCTTTTACGCC
GATAAAGCAGCCTCAATCTCGTCAACTCCGCAGCAGCTCATAATCCAGGC
CCGACTCTTCTTTTCGCTCACCCAGTACCGAAGGGCATTGCACATCCTGG
AAACAAACCAGCTGTCATCGCAGCACCAGACCGCCAGGCTGCTAGCCGCC
CAATGTTACTTTGAGCTCCGCGATTATGACGCCTGTCTGTCTTTGCTGGG
CGATGAACAAGATGTGGACAGCGCCATCTCCACGTTGACGCTGCGAGGAG
CTCCGCGCGAACTGCATGCCGCTCTGTGCGTTCTGCGCGCTCGAGTCCAC
GAACGTCTGGAGAATCCAGAGTGCGCCTTGCTGTGGTACAAGCGCGCCTT
TCGATGCGATATTTTCTGTGTCGAGGCCTTTGAAGCCCTCTCGAGTGCAG
GCTTGCTTCCCCCACCGCAGGCTGCAAAATTCGTCACGGAATCGCTCTCG
GACACCTCGTCAACATCTCAACTTCATGCCCACGCTGTGGCCCGAAAATG
GATTTCGTCCTACTATACCGCCTATGCCAACCACGATGTCGAAACGCCGT
CATCGCCTCCCATGAACGACAACATCGACTTGACCATTGTGCATGCGAAA
CGCAAATTCGTTTCATTAGATTTCGGCAGTTGTCTAGAGCACTGCCGCCA
GGTTTTGCGCCAAGACCCGCACGCTGACAAAGTGCTGCCAATGTATCTCG
CCACGTTGGTGGAACTGAATGAAAGGCACGAACTCTTTGTCACGGCTCAC
AATCTGGTCGACAACTCGCCAAAGTCTGCCATTAGCTGGCTTGCTGTTGG
CTACCATTACCTAGCCAGCGGCAAGCCCGAACTGGCGCGGCGTTTCTTCC
AGAAATGCACCTCGCTTGACATGCGAGTGGCGCCGGCGTGGATAGCGATT
GGCCATGCGTTTGGCGCTCAGGATGAGAGTGATCAAGCGATGGCTGCGTA
CCGAACCGTCACACGATTATTTCCTGGCTCGCAAGAACCTCACTTGTTCA
TGGGCATGGAGTACGTGCGTCAAGGCTCTCTGAATCAAGCCGCCACCATG
CTCCGCCGTGCGGCAGAAGCTTGCCCGAAAGACCCGGCCCCGGTGCATGA
GCTTGGCGTCGTCATGTACCGCATGGGAGACCATGCTGCCGCCGCGAGCT
ACTTCAAGGAAGCTTTGACACTTTGGGAGGCCGGAGAGACGGCGAACGAT
CTGTCGCGCAGAAGTGGCAAACGAGCGGAAGCAGAGGAGGCTACGCTCGT
TAACCTGGGTCATTGTCACCGACGGCTTAAAGACTACAGTGCGGCGAAGC
GGTGCTACGAGCGAGCGCTCGCTGTGCGTCCACGCAGCGCCGGTACTTGT
GGGGCTCTGGGAATGACCTTGCACGCCATGTGGGACTTGGAAGGCGCGGT
GGCCATGTATCATCGAGCACTACGGAACAATCCCGAGGATGCCAATTGTA
GCGAACTCCTGGAGCGGGCGCTCTATGACATGTTTTTAGTGAGACCTTGT
GCGAGCGTGGATTTGCCCTAG