Gvermi12407.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12407.t1
Unique NameGvermi12407.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length136
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4588053..4588623 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog88036.EFJ26866
PFAMsTen1_2
Max annot lvl35493|Streptophyta
GOsGO:0000723,GO:0000781,GO:0003674,GO:0004857,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0006139,GO:0006259,GO:0006457,GO:0006725,GO:0006807,GO:0006950,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010521,GO:0010556,GO:0010558,GO:0010605,GO:0016043,GO:0019219,GO:0019222,GO:0019827,GO:0030234,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032200,GO:0032501,GO:0032502,GO:0034641,GO:0042592,GO:0043086,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044092,GO:0044183,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0045934,GO:0046483,GO:0048367,GO:0048519,GO:0048523,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051276,GO:0051338,GO:0051348,GO:0051972,GO:0051974,GO:0060249,GO:0060255,GO:0065007,GO:0065008,GO:0065009,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0098687,GO:0098727,GO:0098772,GO:1901360,GO:2000112,GO:2000113,GO:2000278,GO:2000279
Evalue2.03e-12
EggNOG OGs2BP4Y@1|root,2S1R3@2759|Eukaryota,37VJ9@33090|Viridiplantae,3GJNK@35493|Streptophyta
DescriptionCST complex subunit
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12407Gvermi12407Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4588053..4588623 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12407.t1Gvermi12407.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4588053..4588623 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12407.t1.stop1Gvermi12407.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4588053..4588055 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12407.t1.CDS1Gvermi12407.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4588053..4588184 -
Gvermi12407.t1.CDS2Gvermi12407.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4588265..4588424 -
Gvermi12407.t1.CDS3Gvermi12407.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4588508..4588623 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12407.t1.exon1Gvermi12407.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4588053..4588184 -
Gvermi12407.t1.exon2Gvermi12407.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4588265..4588424 -
Gvermi12407.t1.exon3Gvermi12407.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4588508..4588623 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12407.t1.intron1Gvermi12407.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 4588185..4588264 -
Gvermi12407.t1.intron2Gvermi12407.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 4588425..4588507 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12407.t1.start1Gvermi12407.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4588621..4588623 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12407.t1 ID=Gvermi12407.t1|Name=Gvermi12407.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=136bp
MAAAVNMPDIKSGKLMQIDELDNWTPDERHGSAVRVVGRVKGVEFGRQLV
FIEHHGRELAVHTALIVDPVFGLDDIGKVFMYLGELERFENELLLRARIA
KEMKGVDIDLYDRCLKIRKDFDKNILDAIERRNDQ*
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spliced messenger RNA

>Gvermi12407.t1 ID=Gvermi12407.t1|Name=Gvermi12407.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=408bp|location=Sequence derived from alignment at ScGOVlb_3404:4588053..4588623- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGCAGCAGTGAACATGCCGGACATCAAGAGCGGAAAACTTATGCA
AATAGACGAGTTGGACAACTGGACTCCAGATGAACGTCACGGAAGCGCCG
TAAGAGTTGTTGGGAGAGTAAAAGGCGTAGAGTTTGGCAGACAACTGGTG
TTCATCGAGCATCACGGACGAGAACTTGCCGTGCATACTGCTCTAATCGT
AGACCCTGTTTTCGGGTTGGATGACATTGGGAAAGTGTTCATGTATCTTG
GTGAGTTGGAAAGATTTGAGAACGAGTTACTCTTACGAGCAAGGATTGCA
AAGGAAATGAAAGGTGTTGACATAGATCTGTACGACAGGTGCCTAAAGAT
AAGAAAAGACTTCGATAAGAATATCTTGGATGCAATTGAACGAAGAAATG
ACCAATAA
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protein sequence of Gvermi12407.t1

>Gvermi12407.t1 ID=Gvermi12407.t1|Name=Gvermi12407.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=136bp
MAAAVNMPDIKSGKLMQIDELDNWTPDERHGSAVRVVGRVKGVEFGRQLV
FIEHHGRELAVHTALIVDPVFGLDDIGKVFMYLGELERFENELLLRARIA
KEMKGVDIDLYDRCLKIRKDFDKNILDAIERRNDQ*
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mRNA from alignment at ScGOVlb_3404:4588053..4588623-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12407.t1 ID=Gvermi12407.t1|Name=Gvermi12407.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=571bp|location=Sequence derived from alignment at ScGOVlb_3404:4588053..4588623- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTGCAGCAGTGAACATGCCGGACATCAAGAGCGGAAAACTTATGCA
AATAGACGAGTTGGACAACTGGACTCCAGATGAACGTCACGGAAGCGCCG
TAAGAGTTGTTGGGAGGTGTGTCAGGAAGGTTATTTTATATCATTGCAAA
TCTTCGAAATTGAATTCTAATCTGACGGTCGATTTTTATCTCGCGAAAGA
GTAAAAGGCGTAGAGTTTGGCAGACAACTGGTGTTCATCGAGCATCACGG
ACGAGAACTTGCCGTGCATACTGCTCTAATCGTAGACCCTGTTTTCGGGT
TGGATGACATTGGGAAAGTGTTCATGTATCTTGGTGAGTTGGAAAGATTT
GAGAACGAGGTAGGTTTGCCAGATAAATGCATCATCCACATCTCTGCTCT
GTCTAACACTCTGAGCACTGTACGATGTGTTGAAACTAGTTACTCTTACG
AGCAAGGATTGCAAAGGAAATGAAAGGTGTTGACATAGATCTGTACGACA
GGTGCCTAAAGATAAGAAAAGACTTCGATAAGAATATCTTGGATGCAATT
GAACGAAGAAATGACCAATAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4588053..4588623-

>Gvermi12407.t1 ID=Gvermi12407.t1|Name=Gvermi12407.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=408bp|location=Sequence derived from alignment at ScGOVlb_3404:4588053..4588623- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTGCAGCAGTGAACATGCCGGACATCAAGAGCGGAAAACTTATGCA
AATAGACGAGTTGGACAACTGGACTCCAGATGAACGTCACGGAAGCGCCG
TAAGAGTTGTTGGGAGAGTAAAAGGCGTAGAGTTTGGCAGACAACTGGTG
TTCATCGAGCATCACGGACGAGAACTTGCCGTGCATACTGCTCTAATCGT
AGACCCTGTTTTCGGGTTGGATGACATTGGGAAAGTGTTCATGTATCTTG
GTGAGTTGGAAAGATTTGAGAACGAGTTACTCTTACGAGCAAGGATTGCA
AAGGAAATGAAAGGTGTTGACATAGATCTGTACGACAGGTGCCTAAAGAT
AAGAAAAGACTTCGATAAGAATATCTTGGATGCAATTGAACGAAGAAATG
ACCAATAA
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