Gvermi12392.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12392.t1
Unique NameGvermi12392.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length365
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4483003..4484097 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707974.1
PFAMsTPT
Max annot lvl2759|Eukaryota
KEGG koko:K15281
KEGG TC2.A.7.15
GOsGO:0003674,GO:0005215,GO:0005338,GO:0006810,GO:0008150,GO:0015165,GO:0015780,GO:0015931,GO:0015932,GO:0022857,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0090481,GO:1901264,GO:1901505
Evalue5.05e-41
EggNOG OGsCOG5070@1|root,KOG1444@2759|Eukaryota
Descriptionnucleotide-sugar transmembrane transporter activity
COG categoryGOU
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12392Gvermi12392Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4483003..4484097 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12392.t1.stop1Gvermi12392.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4483003..4483005 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12392.t1.CDS1Gvermi12392.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4483003..4484097 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12392.t1.exon1Gvermi12392.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4483003..4484097 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12392.t1.start1Gvermi12392.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4484095..4484097 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12392.t1Gvermi12392.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4483003..4484097 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12392.t1 ID=Gvermi12392.t1|Name=Gvermi12392.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=365bp
MRKRLPSNSITEMKANVIDTQKKPQKNPVLPITSLLAALYYIGTSVSLTL
FNKILFSRFPGSDPPFLLLSQSITAVTMLTMLSFTNRIQLPQLSKWTLAS
IRTYTPLYLSNLMMLLTSLIALKFTSLVMYNTLRRTSMIFVVAIHAYVNS
ARPSVYTITATALVTAGALWAGITDLAFDPIGYGLAFAANLSTAVYLNLL
RPIRDRLQVTNLQLIFVNALANIPVLFIIVMLTPRKLSLLSHFANLTFSV
LFFCSCAIAVVINHAVFVNTTTNDAIAQSVAAQLKDVALLAFSIIFVDDP
SQRAHGNLQGVTVGFLGSLIYGVGKVVGRCKEKSESFKSKQQVSGESQES
EQVELVSAENRPST*
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spliced messenger RNA

>Gvermi12392.t1 ID=Gvermi12392.t1|Name=Gvermi12392.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1095bp|location=Sequence derived from alignment at ScGOVlb_3404:4483003..4484097- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCAAGCGCCTCCCATCCAACTCAATAACCGAAATGAAGGCCAACGT
TATTGACACCCAGAAAAAGCCACAGAAAAACCCTGTGCTACCAATCACAT
CACTCCTGGCGGCTTTATATTACATCGGCACATCTGTGTCGTTGACGCTC
TTCAACAAGATATTGTTTTCACGATTCCCTGGCTCTGATCCACCATTTTT
GCTTCTTTCGCAGTCAATAACAGCAGTCACGATGCTCACGATGCTGTCAT
TCACGAATCGGATACAGCTCCCACAGCTTTCAAAATGGACCTTGGCATCG
ATCAGAACTTATACACCGCTCTATCTATCCAATTTGATGATGCTCCTTAC
GTCTCTGATTGCACTCAAATTTACTAGTCTGGTCATGTATAACACACTTC
GCCGTACAAGTATGATTTTTGTCGTCGCAATTCATGCTTATGTCAACAGT
GCTAGGCCAAGTGTTTACACGATTACAGCCACTGCCTTGGTCACAGCGGG
TGCCTTGTGGGCAGGCATCACAGATTTAGCGTTCGACCCGATCGGATACG
GTTTAGCATTCGCAGCGAATCTGAGTACAGCAGTTTACCTCAACCTGTTG
AGGCCCATTCGAGACAGATTACAGGTGACCAATCTACAACTAATCTTCGT
GAATGCGCTTGCCAATATTCCAGTTCTTTTCATCATCGTCATGCTGACAC
CGAGAAAGCTCAGTTTGCTATCTCATTTTGCAAACCTAACTTTCTCGGTG
TTATTCTTTTGTTCCTGTGCAATTGCAGTTGTAATCAATCATGCTGTGTT
CGTCAACACCACAACAAATGATGCCATTGCACAGTCCGTTGCAGCACAGC
TGAAAGATGTCGCACTTTTGGCGTTTAGCATTATCTTTGTTGACGATCCT
TCACAGAGAGCACATGGAAACTTGCAGGGCGTCACGGTCGGCTTCTTGGG
TAGTCTTATTTATGGAGTTGGGAAAGTCGTTGGTCGGTGCAAGGAGAAGT
CCGAAAGTTTTAAATCAAAGCAGCAAGTCTCAGGTGAATCGCAAGAGAGC
GAACAGGTTGAGCTTGTAAGCGCTGAAAATCGTCCGTCCACATGA
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protein sequence of Gvermi12392.t1

>Gvermi12392.t1 ID=Gvermi12392.t1|Name=Gvermi12392.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=365bp
MRKRLPSNSITEMKANVIDTQKKPQKNPVLPITSLLAALYYIGTSVSLTL
FNKILFSRFPGSDPPFLLLSQSITAVTMLTMLSFTNRIQLPQLSKWTLAS
IRTYTPLYLSNLMMLLTSLIALKFTSLVMYNTLRRTSMIFVVAIHAYVNS
ARPSVYTITATALVTAGALWAGITDLAFDPIGYGLAFAANLSTAVYLNLL
RPIRDRLQVTNLQLIFVNALANIPVLFIIVMLTPRKLSLLSHFANLTFSV
LFFCSCAIAVVINHAVFVNTTTNDAIAQSVAAQLKDVALLAFSIIFVDDP
SQRAHGNLQGVTVGFLGSLIYGVGKVVGRCKEKSESFKSKQQVSGESQES
EQVELVSAENRPST*
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mRNA from alignment at ScGOVlb_3404:4483003..4484097-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12392.t1 ID=Gvermi12392.t1|Name=Gvermi12392.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1095bp|location=Sequence derived from alignment at ScGOVlb_3404:4483003..4484097- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCAAGCGCCTCCCATCCAACTCAATAACCGAAATGAAGGCCAACGT
TATTGACACCCAGAAAAAGCCACAGAAAAACCCTGTGCTACCAATCACAT
CACTCCTGGCGGCTTTATATTACATCGGCACATCTGTGTCGTTGACGCTC
TTCAACAAGATATTGTTTTCACGATTCCCTGGCTCTGATCCACCATTTTT
GCTTCTTTCGCAGTCAATAACAGCAGTCACGATGCTCACGATGCTGTCAT
TCACGAATCGGATACAGCTCCCACAGCTTTCAAAATGGACCTTGGCATCG
ATCAGAACTTATACACCGCTCTATCTATCCAATTTGATGATGCTCCTTAC
GTCTCTGATTGCACTCAAATTTACTAGTCTGGTCATGTATAACACACTTC
GCCGTACAAGTATGATTTTTGTCGTCGCAATTCATGCTTATGTCAACAGT
GCTAGGCCAAGTGTTTACACGATTACAGCCACTGCCTTGGTCACAGCGGG
TGCCTTGTGGGCAGGCATCACAGATTTAGCGTTCGACCCGATCGGATACG
GTTTAGCATTCGCAGCGAATCTGAGTACAGCAGTTTACCTCAACCTGTTG
AGGCCCATTCGAGACAGATTACAGGTGACCAATCTACAACTAATCTTCGT
GAATGCGCTTGCCAATATTCCAGTTCTTTTCATCATCGTCATGCTGACAC
CGAGAAAGCTCAGTTTGCTATCTCATTTTGCAAACCTAACTTTCTCGGTG
TTATTCTTTTGTTCCTGTGCAATTGCAGTTGTAATCAATCATGCTGTGTT
CGTCAACACCACAACAAATGATGCCATTGCACAGTCCGTTGCAGCACAGC
TGAAAGATGTCGCACTTTTGGCGTTTAGCATTATCTTTGTTGACGATCCT
TCACAGAGAGCACATGGAAACTTGCAGGGCGTCACGGTCGGCTTCTTGGG
TAGTCTTATTTATGGAGTTGGGAAAGTCGTTGGTCGGTGCAAGGAGAAGT
CCGAAAGTTTTAAATCAAAGCAGCAAGTCTCAGGTGAATCGCAAGAGAGC
GAACAGGTTGAGCTTGTAAGCGCTGAAAATCGTCCGTCCACATGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4483003..4484097-

>Gvermi12392.t1 ID=Gvermi12392.t1|Name=Gvermi12392.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1095bp|location=Sequence derived from alignment at ScGOVlb_3404:4483003..4484097- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCAAGCGCCTCCCATCCAACTCAATAACCGAAATGAAGGCCAACGT
TATTGACACCCAGAAAAAGCCACAGAAAAACCCTGTGCTACCAATCACAT
CACTCCTGGCGGCTTTATATTACATCGGCACATCTGTGTCGTTGACGCTC
TTCAACAAGATATTGTTTTCACGATTCCCTGGCTCTGATCCACCATTTTT
GCTTCTTTCGCAGTCAATAACAGCAGTCACGATGCTCACGATGCTGTCAT
TCACGAATCGGATACAGCTCCCACAGCTTTCAAAATGGACCTTGGCATCG
ATCAGAACTTATACACCGCTCTATCTATCCAATTTGATGATGCTCCTTAC
GTCTCTGATTGCACTCAAATTTACTAGTCTGGTCATGTATAACACACTTC
GCCGTACAAGTATGATTTTTGTCGTCGCAATTCATGCTTATGTCAACAGT
GCTAGGCCAAGTGTTTACACGATTACAGCCACTGCCTTGGTCACAGCGGG
TGCCTTGTGGGCAGGCATCACAGATTTAGCGTTCGACCCGATCGGATACG
GTTTAGCATTCGCAGCGAATCTGAGTACAGCAGTTTACCTCAACCTGTTG
AGGCCCATTCGAGACAGATTACAGGTGACCAATCTACAACTAATCTTCGT
GAATGCGCTTGCCAATATTCCAGTTCTTTTCATCATCGTCATGCTGACAC
CGAGAAAGCTCAGTTTGCTATCTCATTTTGCAAACCTAACTTTCTCGGTG
TTATTCTTTTGTTCCTGTGCAATTGCAGTTGTAATCAATCATGCTGTGTT
CGTCAACACCACAACAAATGATGCCATTGCACAGTCCGTTGCAGCACAGC
TGAAAGATGTCGCACTTTTGGCGTTTAGCATTATCTTTGTTGACGATCCT
TCACAGAGAGCACATGGAAACTTGCAGGGCGTCACGGTCGGCTTCTTGGG
TAGTCTTATTTATGGAGTTGGGAAAGTCGTTGGTCGGTGCAAGGAGAAGT
CCGAAAGTTTTAAATCAAAGCAGCAAGTCTCAGGTGAATCGCAAGAGAGC
GAACAGGTTGAGCTTGTAAGCGCTGAAAATCGTCCGTCCACATGA
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