Gvermi12383.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12383.t1
Unique Name	Gvermi12383.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	385

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:4457607..4458761 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMT560CT
PFAMs	CMAS,Methyltransf_11,Methyltransf_23,Methyltransf_25
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00003,RC01662
KEGG ko	ko:K05928
KEGG Reaction	R07236,R07504,R10491,R10492
KEGG Pathway	ko00130,ko01100,ko01110,map00130,map01100,map01110
KEGG Module	M00112
Evalue	1.1e-71
EggNOG OGs	COG0500@1\|root,KOG1269@2759\|Eukaryota
EC	2.1.1.95
Description	sterol 24-C-methyltransferase activity
COG category	Q
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12383	Gvermi12383	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 4457607..4458761 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12383.t1.start1	Gvermi12383.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 4457607..4457609 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12383.t1.CDS1	Gvermi12383.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 4457607..4458761 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12383.t1.exon1	Gvermi12383.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 4457607..4458761 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12383.t1.stop1	Gvermi12383.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 4458759..4458761 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12383.t1	Gvermi12383.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 4457607..4458761 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:4457607..4458761+
coding sequence from alignment at ScGOVlb_3404:4457607..4458761+

mRNA sequence

>Gvermi12383.t1 ID=Gvermi12383.t1|Name=Gvermi12383.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=385bp
MGAAASRSLPDILKPTPALKFYVKHDASGVPVLVTKQVFRPPIPLWLLAA
IAAVAAWLLRRFIMLKRLSRKYARQNLNNEIAHFYDKRSAAWETVWGEHM
HHGLYDVVNRKKMKGQSAQVRTMSELLKFGNAIDLTLSPNSRILDLGCGI
GGASRFLARHFGDACHVTGITLSPYQAQRANDLNAEKRLEARVKNEVRDA
LSSGFPDESFEIIWSLESGEHIQNKQLLMKECARMLKPGGRLLMLAWCVR
ESTPPLSLRERYSIRRIMEEYVLPTLSPPSEYATEMVRAGFRNVKVEDWT
RRGAPFWGEVVRSTFFNPLGWKMLFKYGWPLIRSALAMRHVISGIRQGAF
RLVAFSAIKSSVEDIEKEKALVGTLTCRDENDLP*

spliced messenger RNA

>Gvermi12383.t1 ID=Gvermi12383.t1|Name=Gvermi12383.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1155bp|location=Sequence derived from alignment at ScGOVlb_3404:4457607..4458761+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGCCGCTGCATCTCGCTCACTGCCCGACATTCTGAAGCCAACACC
GGCGCTCAAATTTTACGTCAAGCACGACGCTTCGGGCGTGCCTGTATTAG
TCACCAAACAGGTCTTCAGACCCCCCATTCCGCTCTGGCTGCTTGCCGCC
ATTGCTGCCGTCGCCGCGTGGCTCCTCCGCCGTTTCATCATGCTCAAGCG
CTTGTCGCGAAAGTATGCGCGACAAAACCTCAACAACGAAATAGCACACT
TTTATGACAAGCGCTCTGCCGCATGGGAGACCGTGTGGGGCGAGCACATG
CACCACGGCCTGTACGACGTTGTGAATCGCAAGAAAATGAAAGGGCAGAG
TGCCCAGGTGAGGACAATGTCCGAACTGTTGAAGTTCGGCAACGCCATCG
ATCTCACCCTGTCGCCCAATTCCAGGATACTCGATTTGGGATGCGGCATC
GGAGGGGCCTCGCGTTTTCTCGCCCGCCATTTTGGAGACGCCTGTCACGT
CACTGGCATTACGCTCAGTCCGTACCAGGCACAACGGGCAAATGATTTGA
ATGCAGAAAAGAGACTTGAAGCAAGGGTGAAAAACGAGGTCAGAGACGCC
CTAAGCAGTGGCTTCCCAGACGAAAGCTTCGAGATCATATGGAGTCTGGA
AAGCGGCGAGCACATACAAAACAAGCAGCTTCTGATGAAGGAATGCGCCC
GAATGTTGAAGCCGGGTGGTCGCTTGTTAATGCTGGCGTGGTGCGTGAGA
GAGTCAACTCCTCCTCTAAGTCTTCGGGAGCGATATTCAATTCGCAGAAT
CATGGAAGAATACGTCCTTCCCACTCTGTCTCCGCCGAGCGAATATGCCA
CCGAGATGGTTCGTGCGGGTTTCCGCAATGTCAAAGTCGAGGACTGGACT
CGGAGAGGAGCTCCATTTTGGGGGGAGGTAGTGCGGAGTACATTTTTTAA
TCCGCTGGGATGGAAGATGTTATTCAAATACGGATGGCCACTGATACGAT
CGGCTCTCGCCATGCGACATGTAATATCGGGTATTCGACAGGGCGCTTTC
CGCCTCGTGGCCTTTTCCGCCATCAAGTCCAGTGTGGAAGATATTGAAAA
GGAGAAAGCTCTAGTTGGTACGTTGACATGTCGCGATGAAAACGATTTAC
CGTAG

protein sequence of Gvermi12383.t1

>Gvermi12383.t1 ID=Gvermi12383.t1|Name=Gvermi12383.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=385bp
MGAAASRSLPDILKPTPALKFYVKHDASGVPVLVTKQVFRPPIPLWLLAA
IAAVAAWLLRRFIMLKRLSRKYARQNLNNEIAHFYDKRSAAWETVWGEHM
HHGLYDVVNRKKMKGQSAQVRTMSELLKFGNAIDLTLSPNSRILDLGCGI
GGASRFLARHFGDACHVTGITLSPYQAQRANDLNAEKRLEARVKNEVRDA
LSSGFPDESFEIIWSLESGEHIQNKQLLMKECARMLKPGGRLLMLAWCVR
ESTPPLSLRERYSIRRIMEEYVLPTLSPPSEYATEMVRAGFRNVKVEDWT
RRGAPFWGEVVRSTFFNPLGWKMLFKYGWPLIRSALAMRHVISGIRQGAF
RLVAFSAIKSSVEDIEKEKALVGTLTCRDENDLP*

mRNA from alignment at ScGOVlb_3404:4457607..4458761+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12383.t1 ID=Gvermi12383.t1|Name=Gvermi12383.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1155bp|location=Sequence derived from alignment at ScGOVlb_3404:4457607..4458761+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCGCCGCTGCATCTCGCTCACTGCCCGACATTCTGAAGCCAACACC
GGCGCTCAAATTTTACGTCAAGCACGACGCTTCGGGCGTGCCTGTATTAG
TCACCAAACAGGTCTTCAGACCCCCCATTCCGCTCTGGCTGCTTGCCGCC
ATTGCTGCCGTCGCCGCGTGGCTCCTCCGCCGTTTCATCATGCTCAAGCG
CTTGTCGCGAAAGTATGCGCGACAAAACCTCAACAACGAAATAGCACACT
TTTATGACAAGCGCTCTGCCGCATGGGAGACCGTGTGGGGCGAGCACATG
CACCACGGCCTGTACGACGTTGTGAATCGCAAGAAAATGAAAGGGCAGAG
TGCCCAGGTGAGGACAATGTCCGAACTGTTGAAGTTCGGCAACGCCATCG
ATCTCACCCTGTCGCCCAATTCCAGGATACTCGATTTGGGATGCGGCATC
GGAGGGGCCTCGCGTTTTCTCGCCCGCCATTTTGGAGACGCCTGTCACGT
CACTGGCATTACGCTCAGTCCGTACCAGGCACAACGGGCAAATGATTTGA
ATGCAGAAAAGAGACTTGAAGCAAGGGTGAAAAACGAGGTCAGAGACGCC
CTAAGCAGTGGCTTCCCAGACGAAAGCTTCGAGATCATATGGAGTCTGGA
AAGCGGCGAGCACATACAAAACAAGCAGCTTCTGATGAAGGAATGCGCCC
GAATGTTGAAGCCGGGTGGTCGCTTGTTAATGCTGGCGTGGTGCGTGAGA
GAGTCAACTCCTCCTCTAAGTCTTCGGGAGCGATATTCAATTCGCAGAAT
CATGGAAGAATACGTCCTTCCCACTCTGTCTCCGCCGAGCGAATATGCCA
CCGAGATGGTTCGTGCGGGTTTCCGCAATGTCAAAGTCGAGGACTGGACT
CGGAGAGGAGCTCCATTTTGGGGGGAGGTAGTGCGGAGTACATTTTTTAA
TCCGCTGGGATGGAAGATGTTATTCAAATACGGATGGCCACTGATACGAT
CGGCTCTCGCCATGCGACATGTAATATCGGGTATTCGACAGGGCGCTTTC
CGCCTCGTGGCCTTTTCCGCCATCAAGTCCAGTGTGGAAGATATTGAAAA
GGAGAAAGCTCTAGTTGGTACGTTGACATGTCGCGATGAAAACGATTTAC
CGTAG

Coding sequence (CDS) from alignment at ScGOVlb_3404:4457607..4458761+

>Gvermi12383.t1 ID=Gvermi12383.t1|Name=Gvermi12383.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1155bp|location=Sequence derived from alignment at ScGOVlb_3404:4457607..4458761+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCGCCGCTGCATCTCGCTCACTGCCCGACATTCTGAAGCCAACACC
GGCGCTCAAATTTTACGTCAAGCACGACGCTTCGGGCGTGCCTGTATTAG
TCACCAAACAGGTCTTCAGACCCCCCATTCCGCTCTGGCTGCTTGCCGCC
ATTGCTGCCGTCGCCGCGTGGCTCCTCCGCCGTTTCATCATGCTCAAGCG
CTTGTCGCGAAAGTATGCGCGACAAAACCTCAACAACGAAATAGCACACT
TTTATGACAAGCGCTCTGCCGCATGGGAGACCGTGTGGGGCGAGCACATG
CACCACGGCCTGTACGACGTTGTGAATCGCAAGAAAATGAAAGGGCAGAG
TGCCCAGGTGAGGACAATGTCCGAACTGTTGAAGTTCGGCAACGCCATCG
ATCTCACCCTGTCGCCCAATTCCAGGATACTCGATTTGGGATGCGGCATC
GGAGGGGCCTCGCGTTTTCTCGCCCGCCATTTTGGAGACGCCTGTCACGT
CACTGGCATTACGCTCAGTCCGTACCAGGCACAACGGGCAAATGATTTGA
ATGCAGAAAAGAGACTTGAAGCAAGGGTGAAAAACGAGGTCAGAGACGCC
CTAAGCAGTGGCTTCCCAGACGAAAGCTTCGAGATCATATGGAGTCTGGA
AAGCGGCGAGCACATACAAAACAAGCAGCTTCTGATGAAGGAATGCGCCC
GAATGTTGAAGCCGGGTGGTCGCTTGTTAATGCTGGCGTGGTGCGTGAGA
GAGTCAACTCCTCCTCTAAGTCTTCGGGAGCGATATTCAATTCGCAGAAT
CATGGAAGAATACGTCCTTCCCACTCTGTCTCCGCCGAGCGAATATGCCA
CCGAGATGGTTCGTGCGGGTTTCCGCAATGTCAAAGTCGAGGACTGGACT
CGGAGAGGAGCTCCATTTTGGGGGGAGGTAGTGCGGAGTACATTTTTTAA
TCCGCTGGGATGGAAGATGTTATTCAAATACGGATGGCCACTGATACGAT
CGGCTCTCGCCATGCGACATGTAATATCGGGTATTCGACAGGGCGCTTTC
CGCCTCGTGGCCTTTTCCGCCATCAAGTCCAGTGTGGAAGATATTGAAAA
GGAGAAAGCTCTAGTTGGTACGTTGACATGTCGCGATGAAAACGATTTAC
CGTAG