Gvermi12363.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12363.t1
Unique NameGvermi12363.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length388
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4367526..4368689 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1122611.KB903990_gene7226
Preferred namenth
PFAMsHhH-GPD
Max annot lvl201174|Actinobacteria
KEGG koko:K10773
KEGG Pathwayko03410,map03410
Evalue1.14e-51
EggNOG OGsCOG0177@1|root,COG0177@2|Bacteria,2GJ01@201174|Actinobacteria
EC4.2.99.18
DescriptionDNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
COG categoryL
BRITEko00000,ko00001,ko01000,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12363Gvermi12363Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4367526..4368689 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12363.t1.start1Gvermi12363.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4367526..4367528 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12363.t1.CDS1Gvermi12363.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4367526..4368689 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12363.t1.exon1Gvermi12363.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4367526..4368689 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12363.t1.stop1Gvermi12363.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4368687..4368689 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12363.t1Gvermi12363.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4367526..4368689 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12363.t1 ID=Gvermi12363.t1|Name=Gvermi12363.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=388bp
MTPKHLQPLSFILVIPLRIQTQKTFNMPLTRSRSRLTIDCNESEIANRIE
TRNSQANLFLSKRRKITSQHDSNSYVKTENLRIVKNEHRTIPPSKDEEAP
VTGPNSGNYKNPSQSTTAKKPAILARVRVRPENFTPAPDIEDAPPRPPSP
QEVEHVLQRLQKFYRGELSTASHPKTKRRKDLLDSLFATILSQATSNTNS
SRAFRSLKNKFGVWEHAMDAGAEAIEEQIRCGGLAKAKSKVIHHILRQLY
EDHGVCSLEFLWGMSTDDAKKTLCSYGGVGPKTASCVLMFGMGRGEFPVD
THIRRIAARLNWMKLGSSAEKTYDVLNATLKDDIKYDLHVLLIEHGRKTC
KARSPQCSRCPLSDMCPSRNVQSLDSSREEVSEQKKR*
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spliced messenger RNA

>Gvermi12363.t1 ID=Gvermi12363.t1|Name=Gvermi12363.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1164bp|location=Sequence derived from alignment at ScGOVlb_3404:4367526..4368689+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTCCCAAACATCTCCAGCCCCTGAGCTTTATCCTAGTGATTCCTCT
TCGCATCCAAACGCAGAAAACTTTCAACATGCCGCTGACGAGAAGCAGAT
CAAGGCTGACAATCGACTGCAATGAATCTGAGATTGCAAATCGAATCGAG
ACAAGGAACTCTCAAGCAAATCTGTTTCTGTCTAAGAGAAGAAAGATCAC
ATCACAGCACGATAGCAACTCGTACGTAAAGACGGAAAACTTGAGAATTG
TAAAGAATGAACATCGCACAATCCCACCGTCCAAGGATGAGGAGGCACCA
GTGACAGGTCCAAACAGTGGCAACTACAAAAATCCCTCGCAATCCACGAC
TGCCAAGAAACCTGCGATATTAGCTCGTGTCCGGGTTCGGCCTGAAAATT
TCACACCTGCGCCCGATATAGAGGATGCGCCACCAAGGCCACCGTCTCCG
CAAGAAGTAGAACACGTTCTGCAACGGCTGCAAAAGTTTTACAGAGGGGA
GCTGTCGACAGCATCTCACCCAAAAACAAAACGAAGAAAAGACTTGTTAG
ACAGTCTTTTTGCAACAATACTGAGCCAGGCGACCTCAAACACGAACTCA
TCGAGAGCATTCAGGAGTCTGAAAAATAAATTTGGCGTCTGGGAGCACGC
AATGGATGCTGGCGCTGAAGCCATTGAAGAGCAAATCCGGTGCGGAGGTT
TGGCGAAAGCCAAGTCAAAAGTGATACATCACATTTTGCGACAGCTCTAC
GAGGATCACGGGGTTTGTTCGCTGGAGTTTTTGTGGGGTATGAGTACAGA
TGATGCGAAAAAAACGTTGTGTTCATACGGCGGAGTTGGGCCCAAGACCG
CTTCGTGCGTGCTTATGTTTGGAATGGGGCGCGGTGAGTTTCCTGTTGAC
ACCCACATAAGACGGATAGCAGCGAGACTTAACTGGATGAAGTTAGGTAG
CTCAGCCGAAAAGACGTACGACGTTCTGAACGCAACACTGAAGGACGATA
TTAAGTACGATCTTCATGTGTTGTTAATAGAACACGGCAGGAAGACTTGC
AAGGCAAGGTCTCCTCAATGCAGTCGTTGCCCTCTTTCGGACATGTGTCC
ATCAAGAAACGTTCAGAGTCTGGATTCAAGCCGAGAAGAGGTATCAGAAC
AGAAAAAAAGATAG
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protein sequence of Gvermi12363.t1

>Gvermi12363.t1 ID=Gvermi12363.t1|Name=Gvermi12363.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=388bp
MTPKHLQPLSFILVIPLRIQTQKTFNMPLTRSRSRLTIDCNESEIANRIE
TRNSQANLFLSKRRKITSQHDSNSYVKTENLRIVKNEHRTIPPSKDEEAP
VTGPNSGNYKNPSQSTTAKKPAILARVRVRPENFTPAPDIEDAPPRPPSP
QEVEHVLQRLQKFYRGELSTASHPKTKRRKDLLDSLFATILSQATSNTNS
SRAFRSLKNKFGVWEHAMDAGAEAIEEQIRCGGLAKAKSKVIHHILRQLY
EDHGVCSLEFLWGMSTDDAKKTLCSYGGVGPKTASCVLMFGMGRGEFPVD
THIRRIAARLNWMKLGSSAEKTYDVLNATLKDDIKYDLHVLLIEHGRKTC
KARSPQCSRCPLSDMCPSRNVQSLDSSREEVSEQKKR*
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mRNA from alignment at ScGOVlb_3404:4367526..4368689+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12363.t1 ID=Gvermi12363.t1|Name=Gvermi12363.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1164bp|location=Sequence derived from alignment at ScGOVlb_3404:4367526..4368689+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTCCCAAACATCTCCAGCCCCTGAGCTTTATCCTAGTGATTCCTCT
TCGCATCCAAACGCAGAAAACTTTCAACATGCCGCTGACGAGAAGCAGAT
CAAGGCTGACAATCGACTGCAATGAATCTGAGATTGCAAATCGAATCGAG
ACAAGGAACTCTCAAGCAAATCTGTTTCTGTCTAAGAGAAGAAAGATCAC
ATCACAGCACGATAGCAACTCGTACGTAAAGACGGAAAACTTGAGAATTG
TAAAGAATGAACATCGCACAATCCCACCGTCCAAGGATGAGGAGGCACCA
GTGACAGGTCCAAACAGTGGCAACTACAAAAATCCCTCGCAATCCACGAC
TGCCAAGAAACCTGCGATATTAGCTCGTGTCCGGGTTCGGCCTGAAAATT
TCACACCTGCGCCCGATATAGAGGATGCGCCACCAAGGCCACCGTCTCCG
CAAGAAGTAGAACACGTTCTGCAACGGCTGCAAAAGTTTTACAGAGGGGA
GCTGTCGACAGCATCTCACCCAAAAACAAAACGAAGAAAAGACTTGTTAG
ACAGTCTTTTTGCAACAATACTGAGCCAGGCGACCTCAAACACGAACTCA
TCGAGAGCATTCAGGAGTCTGAAAAATAAATTTGGCGTCTGGGAGCACGC
AATGGATGCTGGCGCTGAAGCCATTGAAGAGCAAATCCGGTGCGGAGGTT
TGGCGAAAGCCAAGTCAAAAGTGATACATCACATTTTGCGACAGCTCTAC
GAGGATCACGGGGTTTGTTCGCTGGAGTTTTTGTGGGGTATGAGTACAGA
TGATGCGAAAAAAACGTTGTGTTCATACGGCGGAGTTGGGCCCAAGACCG
CTTCGTGCGTGCTTATGTTTGGAATGGGGCGCGGTGAGTTTCCTGTTGAC
ACCCACATAAGACGGATAGCAGCGAGACTTAACTGGATGAAGTTAGGTAG
CTCAGCCGAAAAGACGTACGACGTTCTGAACGCAACACTGAAGGACGATA
TTAAGTACGATCTTCATGTGTTGTTAATAGAACACGGCAGGAAGACTTGC
AAGGCAAGGTCTCCTCAATGCAGTCGTTGCCCTCTTTCGGACATGTGTCC
ATCAAGAAACGTTCAGAGTCTGGATTCAAGCCGAGAAGAGGTATCAGAAC
AGAAAAAAAGATAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4367526..4368689+

>Gvermi12363.t1 ID=Gvermi12363.t1|Name=Gvermi12363.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1164bp|location=Sequence derived from alignment at ScGOVlb_3404:4367526..4368689+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTCCCAAACATCTCCAGCCCCTGAGCTTTATCCTAGTGATTCCTCT
TCGCATCCAAACGCAGAAAACTTTCAACATGCCGCTGACGAGAAGCAGAT
CAAGGCTGACAATCGACTGCAATGAATCTGAGATTGCAAATCGAATCGAG
ACAAGGAACTCTCAAGCAAATCTGTTTCTGTCTAAGAGAAGAAAGATCAC
ATCACAGCACGATAGCAACTCGTACGTAAAGACGGAAAACTTGAGAATTG
TAAAGAATGAACATCGCACAATCCCACCGTCCAAGGATGAGGAGGCACCA
GTGACAGGTCCAAACAGTGGCAACTACAAAAATCCCTCGCAATCCACGAC
TGCCAAGAAACCTGCGATATTAGCTCGTGTCCGGGTTCGGCCTGAAAATT
TCACACCTGCGCCCGATATAGAGGATGCGCCACCAAGGCCACCGTCTCCG
CAAGAAGTAGAACACGTTCTGCAACGGCTGCAAAAGTTTTACAGAGGGGA
GCTGTCGACAGCATCTCACCCAAAAACAAAACGAAGAAAAGACTTGTTAG
ACAGTCTTTTTGCAACAATACTGAGCCAGGCGACCTCAAACACGAACTCA
TCGAGAGCATTCAGGAGTCTGAAAAATAAATTTGGCGTCTGGGAGCACGC
AATGGATGCTGGCGCTGAAGCCATTGAAGAGCAAATCCGGTGCGGAGGTT
TGGCGAAAGCCAAGTCAAAAGTGATACATCACATTTTGCGACAGCTCTAC
GAGGATCACGGGGTTTGTTCGCTGGAGTTTTTGTGGGGTATGAGTACAGA
TGATGCGAAAAAAACGTTGTGTTCATACGGCGGAGTTGGGCCCAAGACCG
CTTCGTGCGTGCTTATGTTTGGAATGGGGCGCGGTGAGTTTCCTGTTGAC
ACCCACATAAGACGGATAGCAGCGAGACTTAACTGGATGAAGTTAGGTAG
CTCAGCCGAAAAGACGTACGACGTTCTGAACGCAACACTGAAGGACGATA
TTAAGTACGATCTTCATGTGTTGTTAATAGAACACGGCAGGAAGACTTGC
AAGGCAAGGTCTCCTCAATGCAGTCGTTGCCCTCTTTCGGACATGTGTCC
ATCAAGAAACGTTCAGAGTCTGGATTCAAGCCGAGAAGAGGTATCAGAAC
AGAAAAAAAGATAG
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