Gvermi12362.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12362.t1
Unique NameGvermi12362.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length144
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4365581..4366012 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1123274.KB899413_gene736
PFAMsHSP20
Max annot lvl203691|Spirochaetes
KEGG koko:K13993
KEGG Pathwayko04141,map04141
Evalue1.17e-10
EggNOG OGsCOG0071@1|root,COG0071@2|Bacteria,2JAWI@203691|Spirochaetes
DescriptionBelongs to the small heat shock protein (HSP20) family
COG categoryO
BRITEko00000,ko00001,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12362Gvermi12362Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4365581..4366012 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12362.t1.start1Gvermi12362.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4365581..4365583 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12362.t1.CDS1Gvermi12362.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4365581..4366012 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12362.t1.exon1Gvermi12362.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4365581..4366012 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12362.t1.stop1Gvermi12362.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4366010..4366012 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12362.t1Gvermi12362.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4365581..4366012 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12362.t1 ID=Gvermi12362.t1|Name=Gvermi12362.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=144bp
MVMHITPFDIPTFTFFEISPHSEPKLKQNASYLVPAAHSYQRNAKTTILQ
VDLPGVHKEQVSIELKGRKLIVCGKRYTSLDHDSKTAGGNPPKSKDVVMY
ERTFELGRDIDLEAVQAESFDHGVLRLVLSKKETAKPRRIAIE*
back to top

spliced messenger RNA

>Gvermi12362.t1 ID=Gvermi12362.t1|Name=Gvermi12362.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=432bp|location=Sequence derived from alignment at ScGOVlb_3404:4365581..4366012+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGATGCACATCACTCCTTTCGATATCCCAACTTTTACCTTCTTTGA
AATCAGTCCGCATTCCGAGCCGAAACTAAAGCAAAATGCTTCTTATTTGG
TCCCTGCAGCGCACTCTTATCAACGTAATGCGAAAACAACAATTTTGCAG
GTCGACCTCCCAGGCGTTCATAAAGAACAAGTCTCCATCGAATTGAAAGG
CCGCAAATTAATCGTATGTGGAAAAAGATATACATCTCTTGATCATGATT
CTAAGACAGCAGGTGGAAATCCACCGAAAAGTAAGGATGTAGTCATGTAT
GAGCGGACATTTGAACTTGGCCGTGATATCGATTTGGAAGCTGTCCAGGC
GGAAAGCTTTGATCACGGAGTACTTCGTCTGGTGCTTTCGAAGAAGGAAA
CAGCGAAACCAAGAAGAATTGCTATTGAGTAA
back to top

protein sequence of Gvermi12362.t1

>Gvermi12362.t1 ID=Gvermi12362.t1|Name=Gvermi12362.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=144bp
MVMHITPFDIPTFTFFEISPHSEPKLKQNASYLVPAAHSYQRNAKTTILQ
VDLPGVHKEQVSIELKGRKLIVCGKRYTSLDHDSKTAGGNPPKSKDVVMY
ERTFELGRDIDLEAVQAESFDHGVLRLVLSKKETAKPRRIAIE*
back to top

mRNA from alignment at ScGOVlb_3404:4365581..4366012+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12362.t1 ID=Gvermi12362.t1|Name=Gvermi12362.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=432bp|location=Sequence derived from alignment at ScGOVlb_3404:4365581..4366012+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTGATGCACATCACTCCTTTCGATATCCCAACTTTTACCTTCTTTGA
AATCAGTCCGCATTCCGAGCCGAAACTAAAGCAAAATGCTTCTTATTTGG
TCCCTGCAGCGCACTCTTATCAACGTAATGCGAAAACAACAATTTTGCAG
GTCGACCTCCCAGGCGTTCATAAAGAACAAGTCTCCATCGAATTGAAAGG
CCGCAAATTAATCGTATGTGGAAAAAGATATACATCTCTTGATCATGATT
CTAAGACAGCAGGTGGAAATCCACCGAAAAGTAAGGATGTAGTCATGTAT
GAGCGGACATTTGAACTTGGCCGTGATATCGATTTGGAAGCTGTCCAGGC
GGAAAGCTTTGATCACGGAGTACTTCGTCTGGTGCTTTCGAAGAAGGAAA
CAGCGAAACCAAGAAGAATTGCTATTGAGTAA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_3404:4365581..4366012+

>Gvermi12362.t1 ID=Gvermi12362.t1|Name=Gvermi12362.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=432bp|location=Sequence derived from alignment at ScGOVlb_3404:4365581..4366012+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTGATGCACATCACTCCTTTCGATATCCCAACTTTTACCTTCTTTGA
AATCAGTCCGCATTCCGAGCCGAAACTAAAGCAAAATGCTTCTTATTTGG
TCCCTGCAGCGCACTCTTATCAACGTAATGCGAAAACAACAATTTTGCAG
GTCGACCTCCCAGGCGTTCATAAAGAACAAGTCTCCATCGAATTGAAAGG
CCGCAAATTAATCGTATGTGGAAAAAGATATACATCTCTTGATCATGATT
CTAAGACAGCAGGTGGAAATCCACCGAAAAGTAAGGATGTAGTCATGTAT
GAGCGGACATTTGAACTTGGCCGTGATATCGATTTGGAAGCTGTCCAGGC
GGAAAGCTTTGATCACGGAGTACTTCGTCTGGTGCTTTCGAAGAAGGAAA
CAGCGAAACCAAGAAGAATTGCTATTGAGTAA
back to top