Gvermi12323.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12323.t1
Unique NameGvermi12323.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length263
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4222334..4223235 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12323Gvermi12323Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4222334..4223235 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12323.t1Gvermi12323.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4222334..4223235 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12323.t1.stop1Gvermi12323.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4222334..4222336 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12323.t1.CDS1Gvermi12323.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4222334..4223044 -
Gvermi12323.t1.CDS2Gvermi12323.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4223158..4223235 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12323.t1.exon1Gvermi12323.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4222334..4223044 -
Gvermi12323.t1.exon2Gvermi12323.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4223158..4223235 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12323.t1.intron1Gvermi12323.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 4223045..4223157 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12323.t1.start1Gvermi12323.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4223233..4223235 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12323.t1 ID=Gvermi12323.t1|Name=Gvermi12323.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=263bp
MAVDLSPAFQVTLYLVFLESLLFFAVIMQAKSVEPGTHSGVARYFGTIFL
FQAGASLFLGLSEQTYQGYFSLYLAIMCVICVVIAVAFCVPAAVVVAVPE
PNKNSRRAVAYVLAVSNVLLSSFIFSSQLSATPDIPYINRLLRRELLGAI
IGAISLLVVACLVRMARRLKGRNGAYILLSGLVLIALFGLLWAYLEPLCR
VGSPQQEWPSECPMPKIFDHNFMMTVFIVVANVLTAEGVLRLMAAGTGVE
DYVEIIPVINTT*
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spliced messenger RNA

>Gvermi12323.t1 ID=Gvermi12323.t1|Name=Gvermi12323.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=789bp|location=Sequence derived from alignment at ScGOVlb_3404:4222334..4223235- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGTTGATCTTTCGCCAGCCTTTCAGGTCACGCTGTACCTCGTGTT
CCTGGAAAGCTTGTTGTTCTTCGCGGTTATCATGCAGGCAAAGTCCGTTG
AACCGGGAACGCACTCCGGCGTAGCGCGATACTTTGGCACAATCTTTCTG
TTTCAAGCCGGCGCCTCCCTGTTCCTGGGCTTGTCCGAGCAAACGTACCA
GGGCTACTTTTCGCTGTATCTGGCCATCATGTGCGTCATCTGCGTCGTCA
TTGCCGTCGCCTTTTGCGTTCCCGCCGCAGTGGTGGTCGCCGTGCCCGAG
CCGAACAAGAACAGCCGACGCGCCGTTGCGTACGTGCTCGCCGTTTCCAA
CGTGCTGCTCTCGTCGTTCATCTTCTCGTCGCAGCTGAGCGCCACGCCGG
ACATTCCGTACATCAACCGTTTGCTGCGGCGCGAACTGCTGGGCGCGATC
ATTGGCGCCATCTCCTTGCTGGTTGTGGCGTGCCTGGTGCGCATGGCGCG
GAGGCTCAAGGGGCGCAACGGCGCGTACATCCTGCTGTCGGGCTTGGTGC
TCATCGCCCTGTTTGGGTTGCTGTGGGCGTACCTGGAACCGCTTTGTCGC
GTGGGCTCCCCGCAGCAGGAATGGCCGTCGGAATGCCCCATGCCCAAGAT
TTTCGACCACAACTTCATGATGACGGTGTTCATTGTCGTGGCCAATGTGC
TGACCGCGGAGGGAGTGCTGCGACTAATGGCGGCGGGAACAGGTGTGGAG
GATTACGTAGAAATCATCCCGGTCATCAATACAACATAG
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protein sequence of Gvermi12323.t1

>Gvermi12323.t1 ID=Gvermi12323.t1|Name=Gvermi12323.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=263bp
MAVDLSPAFQVTLYLVFLESLLFFAVIMQAKSVEPGTHSGVARYFGTIFL
FQAGASLFLGLSEQTYQGYFSLYLAIMCVICVVIAVAFCVPAAVVVAVPE
PNKNSRRAVAYVLAVSNVLLSSFIFSSQLSATPDIPYINRLLRRELLGAI
IGAISLLVVACLVRMARRLKGRNGAYILLSGLVLIALFGLLWAYLEPLCR
VGSPQQEWPSECPMPKIFDHNFMMTVFIVVANVLTAEGVLRLMAAGTGVE
DYVEIIPVINTT*
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mRNA from alignment at ScGOVlb_3404:4222334..4223235-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12323.t1 ID=Gvermi12323.t1|Name=Gvermi12323.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=902bp|location=Sequence derived from alignment at ScGOVlb_3404:4222334..4223235- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCGTTGATCTTTCGCCAGCCTTTCAGGTCACGCTGTACCTCGTGTT
CCTGGAAAGCTTGTTGTTCTTCGCGGTTGTACGTTAGCGCCCTTCTTCTC
TCTTTGTGCCTTTCGTTCGTCCGGCTTGTCTGTCTCTGACACACCGTGCG
CCACCGCCTCCCGCGCCTTGTTTCGCCGCCCCGTCCCGCAGATCATGCAG
GCAAAGTCCGTTGAACCGGGAACGCACTCCGGCGTAGCGCGATACTTTGG
CACAATCTTTCTGTTTCAAGCCGGCGCCTCCCTGTTCCTGGGCTTGTCCG
AGCAAACGTACCAGGGCTACTTTTCGCTGTATCTGGCCATCATGTGCGTC
ATCTGCGTCGTCATTGCCGTCGCCTTTTGCGTTCCCGCCGCAGTGGTGGT
CGCCGTGCCCGAGCCGAACAAGAACAGCCGACGCGCCGTTGCGTACGTGC
TCGCCGTTTCCAACGTGCTGCTCTCGTCGTTCATCTTCTCGTCGCAGCTG
AGCGCCACGCCGGACATTCCGTACATCAACCGTTTGCTGCGGCGCGAACT
GCTGGGCGCGATCATTGGCGCCATCTCCTTGCTGGTTGTGGCGTGCCTGG
TGCGCATGGCGCGGAGGCTCAAGGGGCGCAACGGCGCGTACATCCTGCTG
TCGGGCTTGGTGCTCATCGCCCTGTTTGGGTTGCTGTGGGCGTACCTGGA
ACCGCTTTGTCGCGTGGGCTCCCCGCAGCAGGAATGGCCGTCGGAATGCC
CCATGCCCAAGATTTTCGACCACAACTTCATGATGACGGTGTTCATTGTC
GTGGCCAATGTGCTGACCGCGGAGGGAGTGCTGCGACTAATGGCGGCGGG
AACAGGTGTGGAGGATTACGTAGAAATCATCCCGGTCATCAATACAACAT
AG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4222334..4223235-

>Gvermi12323.t1 ID=Gvermi12323.t1|Name=Gvermi12323.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=789bp|location=Sequence derived from alignment at ScGOVlb_3404:4222334..4223235- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCGTTGATCTTTCGCCAGCCTTTCAGGTCACGCTGTACCTCGTGTT
CCTGGAAAGCTTGTTGTTCTTCGCGGTTATCATGCAGGCAAAGTCCGTTG
AACCGGGAACGCACTCCGGCGTAGCGCGATACTTTGGCACAATCTTTCTG
TTTCAAGCCGGCGCCTCCCTGTTCCTGGGCTTGTCCGAGCAAACGTACCA
GGGCTACTTTTCGCTGTATCTGGCCATCATGTGCGTCATCTGCGTCGTCA
TTGCCGTCGCCTTTTGCGTTCCCGCCGCAGTGGTGGTCGCCGTGCCCGAG
CCGAACAAGAACAGCCGACGCGCCGTTGCGTACGTGCTCGCCGTTTCCAA
CGTGCTGCTCTCGTCGTTCATCTTCTCGTCGCAGCTGAGCGCCACGCCGG
ACATTCCGTACATCAACCGTTTGCTGCGGCGCGAACTGCTGGGCGCGATC
ATTGGCGCCATCTCCTTGCTGGTTGTGGCGTGCCTGGTGCGCATGGCGCG
GAGGCTCAAGGGGCGCAACGGCGCGTACATCCTGCTGTCGGGCTTGGTGC
TCATCGCCCTGTTTGGGTTGCTGTGGGCGTACCTGGAACCGCTTTGTCGC
GTGGGCTCCCCGCAGCAGGAATGGCCGTCGGAATGCCCCATGCCCAAGAT
TTTCGACCACAACTTCATGATGACGGTGTTCATTGTCGTGGCCAATGTGC
TGACCGCGGAGGGAGTGCTGCGACTAATGGCGGCGGGAACAGGTGTGGAG
GATTACGTAGAAATCATCCCGGTCATCAATACAACATAG
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