Gvermi12319.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12319.t1
Unique NameGvermi12319.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length597
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4198448..4200238 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702826.1
PFAMsAlpha-amylase,Alpha-amylase_C,CBM_48,DUF1752,Glyco_transf_4,Glycos_transf_1
Max annot lvl2759|Eukaryota
Evalue2.95e-202
EggNOG OGsCOG0438@1|root,KOG0853@2759|Eukaryota
Descriptionsucrose synthase activity
COG categoryM
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12319Gvermi12319Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4198448..4200238 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12319.t1.stop1Gvermi12319.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4198448..4198450 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12319.t1.CDS1Gvermi12319.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4198448..4200238 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12319.t1.exon1Gvermi12319.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4198448..4200238 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12319.t1.start1Gvermi12319.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4200236..4200238 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12319.t1Gvermi12319.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4198448..4200238 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12319.t1 ID=Gvermi12319.t1|Name=Gvermi12319.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=597bp
MKRVGSIKEVVDIALELPAGAVPYEEFDFEPYFEEAQSEEELRKTWRVFT
KVKDVLDNGRRLENASWRLWHRERAKTGVVPPDILSLATASEAEKYHLDT
SLKKAEDETDRIVGDMFGGVGHHFQEENAKVVQKARAERTRALLEMAEKH
HLADEVVNDILGWVSSSVVTAEEVVVHQSADLLPKDVEDARDYIHRTVFM
PRPRVAAFCHSLERNGANNFLLYLVRELREQLSFVVYSPKEGAMRADYEA
MGIAVSICNMKLVTYPEDVRAVLKKFQYAIANTIMTTEVINACRDLNVPC
LWVIHEAWPKDQFNYYAKEVFMMTHLDEKAITDAFSNATKIVFPAQVQRK
CYDGLFNNQDARVIYNGIPLASINAFRAVQSRDSVRKELGYGPNDVLLVH
MGTVCKRKAQLVTCQAFAELHMNGPLPDGKSYKLLLVGARYIRQHEIDYI
DECKQTLEAVGAEGAATILDVKKNVLPYYLAADIILCPSINEVLPLVICE
AMAFERPVIATRIDGIPEALDDGVEGILIEPNNPMALYDAIEKLASDEEL
RRTMGAAGRKRVLSQFSFATMSKTYRETIGLDLQLVPNPEVVDVKA*
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spliced messenger RNA

>Gvermi12319.t1 ID=Gvermi12319.t1|Name=Gvermi12319.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1791bp|location=Sequence derived from alignment at ScGOVlb_3404:4198448..4200238- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCGTGTGGGTTCTATCAAGGAGGTCGTTGACATCGCACTCGAGCT
CCCTGCCGGTGCCGTCCCGTATGAGGAGTTCGATTTCGAGCCGTACTTTG
AGGAGGCGCAGAGTGAGGAGGAGCTGCGAAAGACCTGGCGCGTTTTCACC
AAAGTCAAGGACGTCTTGGACAATGGCCGCCGTCTGGAAAACGCCAGCTG
GCGCCTCTGGCATCGCGAACGCGCCAAAACTGGAGTCGTCCCGCCGGACA
TCCTCTCGCTCGCTACTGCCTCTGAAGCCGAAAAGTACCATCTTGACACC
AGTTTAAAGAAGGCCGAAGACGAGACTGATCGCATCGTCGGCGACATGTT
TGGCGGGGTGGGCCATCACTTTCAGGAGGAAAATGCCAAAGTTGTTCAGA
AAGCCAGGGCGGAGCGCACCCGCGCCCTGCTAGAAATGGCTGAAAAGCAT
CACCTGGCCGACGAAGTCGTGAATGATATCTTGGGCTGGGTCTCCTCCTC
AGTCGTCACAGCAGAGGAAGTTGTCGTTCATCAATCCGCAGACCTGCTTC
CAAAGGATGTGGAGGATGCCCGAGACTATATCCACCGCACAGTGTTCATG
CCTAGACCCAGAGTTGCTGCCTTCTGTCACTCATTGGAGCGCAATGGTGC
CAACAATTTTTTGCTCTATCTGGTTCGAGAGTTGCGTGAGCAATTGTCCT
TTGTGGTTTACTCGCCAAAGGAAGGTGCCATGAGAGCCGACTACGAAGCC
ATGGGTATCGCCGTAAGCATATGCAATATGAAGCTTGTCACATATCCGGA
AGACGTTCGTGCCGTTCTCAAAAAGTTCCAGTATGCCATAGCGAATACCA
TCATGACCACAGAGGTGATCAATGCCTGTCGCGACTTGAATGTCCCTTGT
CTGTGGGTTATTCACGAAGCATGGCCCAAGGATCAGTTCAACTATTATGC
CAAGGAGGTATTCATGATGACTCATCTAGACGAGAAGGCCATAACTGATG
CTTTTTCAAATGCCACCAAGATCGTTTTCCCAGCCCAAGTGCAGCGAAAA
TGCTACGATGGTCTATTCAACAATCAAGATGCCCGAGTCATTTACAACGG
TATTCCGCTTGCAAGCATTAACGCGTTTAGGGCTGTGCAGAGTCGTGATA
GTGTTCGCAAGGAATTGGGCTATGGTCCAAATGATGTGCTTCTAGTGCAC
ATGGGAACTGTTTGTAAGCGAAAGGCACAACTTGTCACGTGCCAGGCCTT
TGCTGAATTGCATATGAATGGACCGCTGCCTGATGGCAAATCATACAAAC
TTCTCTTGGTTGGAGCGCGCTACATTCGCCAACATGAGATTGATTACATT
GATGAATGTAAGCAAACCTTGGAAGCTGTGGGTGCCGAAGGAGCGGCCAC
GATTCTTGATGTGAAGAAGAATGTGTTGCCGTATTATCTTGCCGCAGACA
TTATTCTGTGCCCAAGCATAAACGAGGTGCTTCCACTCGTGATATGCGAG
GCAATGGCGTTTGAAAGACCAGTGATTGCTACGCGAATTGATGGTATTCC
GGAGGCATTGGATGACGGCGTCGAAGGCATCCTCATTGAACCGAATAATC
CTATGGCTCTCTATGACGCGATTGAGAAGCTGGCATCAGACGAAGAGTTA
CGACGCACAATGGGAGCAGCCGGGCGAAAACGGGTACTGTCGCAGTTCAG
TTTTGCTACCATGTCCAAAACATACCGTGAAACAATTGGGTTGGACCTGC
AACTTGTTCCCAATCCGGAAGTTGTAGATGTGAAAGCGTAG
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protein sequence of Gvermi12319.t1

>Gvermi12319.t1 ID=Gvermi12319.t1|Name=Gvermi12319.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=597bp
MKRVGSIKEVVDIALELPAGAVPYEEFDFEPYFEEAQSEEELRKTWRVFT
KVKDVLDNGRRLENASWRLWHRERAKTGVVPPDILSLATASEAEKYHLDT
SLKKAEDETDRIVGDMFGGVGHHFQEENAKVVQKARAERTRALLEMAEKH
HLADEVVNDILGWVSSSVVTAEEVVVHQSADLLPKDVEDARDYIHRTVFM
PRPRVAAFCHSLERNGANNFLLYLVRELREQLSFVVYSPKEGAMRADYEA
MGIAVSICNMKLVTYPEDVRAVLKKFQYAIANTIMTTEVINACRDLNVPC
LWVIHEAWPKDQFNYYAKEVFMMTHLDEKAITDAFSNATKIVFPAQVQRK
CYDGLFNNQDARVIYNGIPLASINAFRAVQSRDSVRKELGYGPNDVLLVH
MGTVCKRKAQLVTCQAFAELHMNGPLPDGKSYKLLLVGARYIRQHEIDYI
DECKQTLEAVGAEGAATILDVKKNVLPYYLAADIILCPSINEVLPLVICE
AMAFERPVIATRIDGIPEALDDGVEGILIEPNNPMALYDAIEKLASDEEL
RRTMGAAGRKRVLSQFSFATMSKTYRETIGLDLQLVPNPEVVDVKA*
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mRNA from alignment at ScGOVlb_3404:4198448..4200238-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12319.t1 ID=Gvermi12319.t1|Name=Gvermi12319.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1791bp|location=Sequence derived from alignment at ScGOVlb_3404:4198448..4200238- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGCGTGTGGGTTCTATCAAGGAGGTCGTTGACATCGCACTCGAGCT
CCCTGCCGGTGCCGTCCCGTATGAGGAGTTCGATTTCGAGCCGTACTTTG
AGGAGGCGCAGAGTGAGGAGGAGCTGCGAAAGACCTGGCGCGTTTTCACC
AAAGTCAAGGACGTCTTGGACAATGGCCGCCGTCTGGAAAACGCCAGCTG
GCGCCTCTGGCATCGCGAACGCGCCAAAACTGGAGTCGTCCCGCCGGACA
TCCTCTCGCTCGCTACTGCCTCTGAAGCCGAAAAGTACCATCTTGACACC
AGTTTAAAGAAGGCCGAAGACGAGACTGATCGCATCGTCGGCGACATGTT
TGGCGGGGTGGGCCATCACTTTCAGGAGGAAAATGCCAAAGTTGTTCAGA
AAGCCAGGGCGGAGCGCACCCGCGCCCTGCTAGAAATGGCTGAAAAGCAT
CACCTGGCCGACGAAGTCGTGAATGATATCTTGGGCTGGGTCTCCTCCTC
AGTCGTCACAGCAGAGGAAGTTGTCGTTCATCAATCCGCAGACCTGCTTC
CAAAGGATGTGGAGGATGCCCGAGACTATATCCACCGCACAGTGTTCATG
CCTAGACCCAGAGTTGCTGCCTTCTGTCACTCATTGGAGCGCAATGGTGC
CAACAATTTTTTGCTCTATCTGGTTCGAGAGTTGCGTGAGCAATTGTCCT
TTGTGGTTTACTCGCCAAAGGAAGGTGCCATGAGAGCCGACTACGAAGCC
ATGGGTATCGCCGTAAGCATATGCAATATGAAGCTTGTCACATATCCGGA
AGACGTTCGTGCCGTTCTCAAAAAGTTCCAGTATGCCATAGCGAATACCA
TCATGACCACAGAGGTGATCAATGCCTGTCGCGACTTGAATGTCCCTTGT
CTGTGGGTTATTCACGAAGCATGGCCCAAGGATCAGTTCAACTATTATGC
CAAGGAGGTATTCATGATGACTCATCTAGACGAGAAGGCCATAACTGATG
CTTTTTCAAATGCCACCAAGATCGTTTTCCCAGCCCAAGTGCAGCGAAAA
TGCTACGATGGTCTATTCAACAATCAAGATGCCCGAGTCATTTACAACGG
TATTCCGCTTGCAAGCATTAACGCGTTTAGGGCTGTGCAGAGTCGTGATA
GTGTTCGCAAGGAATTGGGCTATGGTCCAAATGATGTGCTTCTAGTGCAC
ATGGGAACTGTTTGTAAGCGAAAGGCACAACTTGTCACGTGCCAGGCCTT
TGCTGAATTGCATATGAATGGACCGCTGCCTGATGGCAAATCATACAAAC
TTCTCTTGGTTGGAGCGCGCTACATTCGCCAACATGAGATTGATTACATT
GATGAATGTAAGCAAACCTTGGAAGCTGTGGGTGCCGAAGGAGCGGCCAC
GATTCTTGATGTGAAGAAGAATGTGTTGCCGTATTATCTTGCCGCAGACA
TTATTCTGTGCCCAAGCATAAACGAGGTGCTTCCACTCGTGATATGCGAG
GCAATGGCGTTTGAAAGACCAGTGATTGCTACGCGAATTGATGGTATTCC
GGAGGCATTGGATGACGGCGTCGAAGGCATCCTCATTGAACCGAATAATC
CTATGGCTCTCTATGACGCGATTGAGAAGCTGGCATCAGACGAAGAGTTA
CGACGCACAATGGGAGCAGCCGGGCGAAAACGGGTACTGTCGCAGTTCAG
TTTTGCTACCATGTCCAAAACATACCGTGAAACAATTGGGTTGGACCTGC
AACTTGTTCCCAATCCGGAAGTTGTAGATGTGAAAGCGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4198448..4200238-

>Gvermi12319.t1 ID=Gvermi12319.t1|Name=Gvermi12319.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1791bp|location=Sequence derived from alignment at ScGOVlb_3404:4198448..4200238- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGCGTGTGGGTTCTATCAAGGAGGTCGTTGACATCGCACTCGAGCT
CCCTGCCGGTGCCGTCCCGTATGAGGAGTTCGATTTCGAGCCGTACTTTG
AGGAGGCGCAGAGTGAGGAGGAGCTGCGAAAGACCTGGCGCGTTTTCACC
AAAGTCAAGGACGTCTTGGACAATGGCCGCCGTCTGGAAAACGCCAGCTG
GCGCCTCTGGCATCGCGAACGCGCCAAAACTGGAGTCGTCCCGCCGGACA
TCCTCTCGCTCGCTACTGCCTCTGAAGCCGAAAAGTACCATCTTGACACC
AGTTTAAAGAAGGCCGAAGACGAGACTGATCGCATCGTCGGCGACATGTT
TGGCGGGGTGGGCCATCACTTTCAGGAGGAAAATGCCAAAGTTGTTCAGA
AAGCCAGGGCGGAGCGCACCCGCGCCCTGCTAGAAATGGCTGAAAAGCAT
CACCTGGCCGACGAAGTCGTGAATGATATCTTGGGCTGGGTCTCCTCCTC
AGTCGTCACAGCAGAGGAAGTTGTCGTTCATCAATCCGCAGACCTGCTTC
CAAAGGATGTGGAGGATGCCCGAGACTATATCCACCGCACAGTGTTCATG
CCTAGACCCAGAGTTGCTGCCTTCTGTCACTCATTGGAGCGCAATGGTGC
CAACAATTTTTTGCTCTATCTGGTTCGAGAGTTGCGTGAGCAATTGTCCT
TTGTGGTTTACTCGCCAAAGGAAGGTGCCATGAGAGCCGACTACGAAGCC
ATGGGTATCGCCGTAAGCATATGCAATATGAAGCTTGTCACATATCCGGA
AGACGTTCGTGCCGTTCTCAAAAAGTTCCAGTATGCCATAGCGAATACCA
TCATGACCACAGAGGTGATCAATGCCTGTCGCGACTTGAATGTCCCTTGT
CTGTGGGTTATTCACGAAGCATGGCCCAAGGATCAGTTCAACTATTATGC
CAAGGAGGTATTCATGATGACTCATCTAGACGAGAAGGCCATAACTGATG
CTTTTTCAAATGCCACCAAGATCGTTTTCCCAGCCCAAGTGCAGCGAAAA
TGCTACGATGGTCTATTCAACAATCAAGATGCCCGAGTCATTTACAACGG
TATTCCGCTTGCAAGCATTAACGCGTTTAGGGCTGTGCAGAGTCGTGATA
GTGTTCGCAAGGAATTGGGCTATGGTCCAAATGATGTGCTTCTAGTGCAC
ATGGGAACTGTTTGTAAGCGAAAGGCACAACTTGTCACGTGCCAGGCCTT
TGCTGAATTGCATATGAATGGACCGCTGCCTGATGGCAAATCATACAAAC
TTCTCTTGGTTGGAGCGCGCTACATTCGCCAACATGAGATTGATTACATT
GATGAATGTAAGCAAACCTTGGAAGCTGTGGGTGCCGAAGGAGCGGCCAC
GATTCTTGATGTGAAGAAGAATGTGTTGCCGTATTATCTTGCCGCAGACA
TTATTCTGTGCCCAAGCATAAACGAGGTGCTTCCACTCGTGATATGCGAG
GCAATGGCGTTTGAAAGACCAGTGATTGCTACGCGAATTGATGGTATTCC
GGAGGCATTGGATGACGGCGTCGAAGGCATCCTCATTGAACCGAATAATC
CTATGGCTCTCTATGACGCGATTGAGAAGCTGGCATCAGACGAAGAGTTA
CGACGCACAATGGGAGCAGCCGGGCGAAAACGGGTACTGTCGCAGTTCAG
TTTTGCTACCATGTCCAAAACATACCGTGAAACAATTGGGTTGGACCTGC
AACTTGTTCCCAATCCGGAAGTTGTAGATGTGAAAGCGTAG
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