Gvermi12310.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12310.t1
Unique NameGvermi12310.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length283
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4161453..4162301 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMQ158CT
PFAMsHist_deacetyl
Max annot lvl2759|Eukaryota
Evalue4.22e-76
EggNOG OGsCOG0123@1|root,KOG1344@2759|Eukaryota
Descriptionprotein deacetylase activity
COG categoryBQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12310Gvermi12310Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4161453..4162301 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12310.t1.stop1Gvermi12310.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4161453..4161455 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12310.t1.CDS1Gvermi12310.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4161453..4162301 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12310.t1.exon1Gvermi12310.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4161453..4162301 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12310.t1.start1Gvermi12310.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4162299..4162301 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12310.t1Gvermi12310.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4161453..4162301 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12310.t1 ID=Gvermi12310.t1|Name=Gvermi12310.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=283bp
MQKYALVRNQLQQDDVLSNATFTAAPLATRVELEAAHDASYVKRFLGGGL
SEREIRAIGFPWSPAGVRRALASTGGTVAAMRCVLNGAAMAGQLAGGTHH
ARRGGGGGFCVFNDVAVASMEALRQGRRVAVLDFDVHQGDGTAEMLRGER
NVLTVSLHARNNYPFEKVESDVDVAFADGAGDDEYLAAVEEVVPDVLDGF
EPHVAVLQMGVDALADDALGRLALTRHGLSRRNRFVYAQLLRRRVRAVVT
MGGGYSAPICASVAAHCDVYTDLARALRRGGH*
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spliced messenger RNA

>Gvermi12310.t1 ID=Gvermi12310.t1|Name=Gvermi12310.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=849bp|location=Sequence derived from alignment at ScGOVlb_3404:4161453..4162301- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAAAATACGCACTGGTGAGAAATCAGCTGCAGCAGGATGACGTTTT
GTCGAATGCAACGTTCACGGCTGCGCCGCTGGCCACGCGCGTGGAGCTCG
AAGCGGCGCATGACGCATCATACGTGAAAAGGTTCCTGGGCGGGGGATTG
AGCGAGAGAGAAATACGGGCGATTGGGTTCCCGTGGTCTCCCGCGGGGGT
GCGACGGGCGCTGGCAAGCACGGGCGGCACGGTGGCGGCGATGCGGTGCG
TGCTGAACGGGGCGGCGATGGCGGGGCAGCTGGCGGGTGGAACGCATCAC
GCGCGGCGCGGGGGAGGCGGCGGCTTTTGCGTGTTCAACGACGTAGCGGT
GGCAAGCATGGAGGCGCTGAGACAGGGGCGGCGGGTGGCGGTTCTGGACT
TTGACGTGCACCAGGGCGACGGGACGGCGGAGATGCTGCGCGGCGAGCGC
AATGTGCTGACGGTGTCGCTGCACGCGAGGAACAATTACCCGTTCGAGAA
GGTGGAAAGCGACGTGGACGTTGCGTTCGCGGACGGGGCGGGCGACGACG
AGTACCTGGCGGCGGTGGAGGAGGTGGTACCGGACGTGCTGGACGGGTTC
GAGCCGCACGTGGCGGTGCTGCAGATGGGCGTGGACGCGCTGGCGGACGA
CGCGCTGGGGCGGCTGGCGCTCACGCGCCACGGGCTGTCGCGCCGCAACC
GCTTCGTCTACGCGCAGCTGCTGCGGCGGCGCGTGCGCGCGGTGGTGACG
ATGGGCGGCGGTTACTCGGCGCCAATCTGCGCGAGCGTGGCGGCGCACTG
CGACGTGTACACGGACCTGGCGCGCGCGCTGCGCCGCGGCGGCCACTGA
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protein sequence of Gvermi12310.t1

>Gvermi12310.t1 ID=Gvermi12310.t1|Name=Gvermi12310.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=283bp
MQKYALVRNQLQQDDVLSNATFTAAPLATRVELEAAHDASYVKRFLGGGL
SEREIRAIGFPWSPAGVRRALASTGGTVAAMRCVLNGAAMAGQLAGGTHH
ARRGGGGGFCVFNDVAVASMEALRQGRRVAVLDFDVHQGDGTAEMLRGER
NVLTVSLHARNNYPFEKVESDVDVAFADGAGDDEYLAAVEEVVPDVLDGF
EPHVAVLQMGVDALADDALGRLALTRHGLSRRNRFVYAQLLRRRVRAVVT
MGGGYSAPICASVAAHCDVYTDLARALRRGGH*
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mRNA from alignment at ScGOVlb_3404:4161453..4162301-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12310.t1 ID=Gvermi12310.t1|Name=Gvermi12310.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=849bp|location=Sequence derived from alignment at ScGOVlb_3404:4161453..4162301- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAAAAATACGCACTGGTGAGAAATCAGCTGCAGCAGGATGACGTTTT
GTCGAATGCAACGTTCACGGCTGCGCCGCTGGCCACGCGCGTGGAGCTCG
AAGCGGCGCATGACGCATCATACGTGAAAAGGTTCCTGGGCGGGGGATTG
AGCGAGAGAGAAATACGGGCGATTGGGTTCCCGTGGTCTCCCGCGGGGGT
GCGACGGGCGCTGGCAAGCACGGGCGGCACGGTGGCGGCGATGCGGTGCG
TGCTGAACGGGGCGGCGATGGCGGGGCAGCTGGCGGGTGGAACGCATCAC
GCGCGGCGCGGGGGAGGCGGCGGCTTTTGCGTGTTCAACGACGTAGCGGT
GGCAAGCATGGAGGCGCTGAGACAGGGGCGGCGGGTGGCGGTTCTGGACT
TTGACGTGCACCAGGGCGACGGGACGGCGGAGATGCTGCGCGGCGAGCGC
AATGTGCTGACGGTGTCGCTGCACGCGAGGAACAATTACCCGTTCGAGAA
GGTGGAAAGCGACGTGGACGTTGCGTTCGCGGACGGGGCGGGCGACGACG
AGTACCTGGCGGCGGTGGAGGAGGTGGTACCGGACGTGCTGGACGGGTTC
GAGCCGCACGTGGCGGTGCTGCAGATGGGCGTGGACGCGCTGGCGGACGA
CGCGCTGGGGCGGCTGGCGCTCACGCGCCACGGGCTGTCGCGCCGCAACC
GCTTCGTCTACGCGCAGCTGCTGCGGCGGCGCGTGCGCGCGGTGGTGACG
ATGGGCGGCGGTTACTCGGCGCCAATCTGCGCGAGCGTGGCGGCGCACTG
CGACGTGTACACGGACCTGGCGCGCGCGCTGCGCCGCGGCGGCCACTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4161453..4162301-

>Gvermi12310.t1 ID=Gvermi12310.t1|Name=Gvermi12310.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=849bp|location=Sequence derived from alignment at ScGOVlb_3404:4161453..4162301- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAAAAATACGCACTGGTGAGAAATCAGCTGCAGCAGGATGACGTTTT
GTCGAATGCAACGTTCACGGCTGCGCCGCTGGCCACGCGCGTGGAGCTCG
AAGCGGCGCATGACGCATCATACGTGAAAAGGTTCCTGGGCGGGGGATTG
AGCGAGAGAGAAATACGGGCGATTGGGTTCCCGTGGTCTCCCGCGGGGGT
GCGACGGGCGCTGGCAAGCACGGGCGGCACGGTGGCGGCGATGCGGTGCG
TGCTGAACGGGGCGGCGATGGCGGGGCAGCTGGCGGGTGGAACGCATCAC
GCGCGGCGCGGGGGAGGCGGCGGCTTTTGCGTGTTCAACGACGTAGCGGT
GGCAAGCATGGAGGCGCTGAGACAGGGGCGGCGGGTGGCGGTTCTGGACT
TTGACGTGCACCAGGGCGACGGGACGGCGGAGATGCTGCGCGGCGAGCGC
AATGTGCTGACGGTGTCGCTGCACGCGAGGAACAATTACCCGTTCGAGAA
GGTGGAAAGCGACGTGGACGTTGCGTTCGCGGACGGGGCGGGCGACGACG
AGTACCTGGCGGCGGTGGAGGAGGTGGTACCGGACGTGCTGGACGGGTTC
GAGCCGCACGTGGCGGTGCTGCAGATGGGCGTGGACGCGCTGGCGGACGA
CGCGCTGGGGCGGCTGGCGCTCACGCGCCACGGGCTGTCGCGCCGCAACC
GCTTCGTCTACGCGCAGCTGCTGCGGCGGCGCGTGCGCGCGGTGGTGACG
ATGGGCGGCGGTTACTCGGCGCCAATCTGCGCGAGCGTGGCGGCGCACTG
CGACGTGTACACGGACCTGGCGCGCGCGCTGCGCCGCGGCGGCCACTGA
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