Gvermi12251.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12251.t1
Unique NameGvermi12251.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length257
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3977977..3978747 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog72658.Bostr.26527s0456.1.p
PFAMsPex19
Max annot lvl35493|Streptophyta
KEGG koko:K13337
KEGG TC3.A.20.1,9.A.17.1
KEGG Pathwayko04146,map04146
GOsGO:0000268,GO:0003674,GO:0005048,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005778,GO:0005829,GO:0006605,GO:0006625,GO:0006810,GO:0006886,GO:0006996,GO:0007031,GO:0008104,GO:0008150,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0031090,GO:0031903,GO:0033036,GO:0033218,GO:0033328,GO:0033365,GO:0034613,GO:0042277,GO:0042579,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043574,GO:0044422,GO:0044424,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0072662,GO:0072663,GO:0098588,GO:0098805
Evalue1.75e-15
EggNOG OGsKOG3133@1|root,KOG3133@2759|Eukaryota,37KG2@33090|Viridiplantae,3GD2M@35493|Streptophyta,3HUGS@3699|Brassicales
DescriptionPeroxisome biogenesis protein
COG categoryU
BRITEko00000,ko00001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12251Gvermi12251Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3977977..3978747 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12251.t1.start1Gvermi12251.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3977977..3977979 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12251.t1.CDS1Gvermi12251.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3977977..3978747 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12251.t1.exon1Gvermi12251.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3977977..3978747 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12251.t1.stop1Gvermi12251.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3978745..3978747 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12251.t1Gvermi12251.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3977977..3978747 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12251.t1 ID=Gvermi12251.t1|Name=Gvermi12251.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=257bp
MDDSELDGILDSALEAFDTVEDGSLVSSRTAEQSDVEETVRDAGLEREIQ
EESGTRSPVQTDETGKALEQALKALRELGVGEDQGRDQVNDEDMKLVEEF
MTSLSSSLGNVSPQNQLDDQRPNTTQTSEAGHVNGGRPEVEKLVDTIVGQ
LLSEDVLKVPMMHMRTAYDEWLPKNVDSLSAEERERYTKQQQLVRQICVK
YEDKADSAEIMELLSKMQDTGPPPEAVLKNLDSSSTGSPSFQASDVEKFG
EMCPMQ*
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spliced messenger RNA

>Gvermi12251.t1 ID=Gvermi12251.t1|Name=Gvermi12251.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=771bp|location=Sequence derived from alignment at ScGOVlb_3404:3977977..3978747+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGATTCAGAGCTTGATGGTATTCTAGATAGCGCCTTAGAGGCGTT
TGACACTGTTGAAGATGGTTCTCTCGTGTCTTCGAGAACGGCAGAACAGT
CCGATGTTGAAGAAACGGTGCGAGATGCGGGTCTGGAACGAGAGATACAA
GAAGAAAGTGGAACAAGGTCACCCGTCCAAACGGATGAAACAGGCAAAGC
ACTTGAACAAGCATTGAAGGCTCTCCGCGAATTAGGAGTTGGCGAAGATC
AAGGAAGAGATCAAGTGAATGATGAGGACATGAAGTTGGTCGAAGAATTT
ATGACAAGTCTGTCATCGTCTCTGGGCAATGTGTCCCCACAGAACCAATT
GGATGACCAACGACCCAACACTACCCAGACGAGCGAAGCTGGGCACGTCA
ACGGTGGACGGCCGGAAGTCGAAAAGCTGGTAGACACCATAGTCGGCCAG
CTGCTTTCCGAAGATGTTTTGAAAGTGCCAATGATGCACATGCGGACTGC
TTATGACGAGTGGCTCCCCAAAAATGTGGACTCCCTATCGGCCGAAGAGC
GCGAGCGGTACACTAAACAGCAGCAATTAGTGCGGCAAATTTGCGTCAAG
TATGAAGATAAAGCAGATTCCGCCGAGATCATGGAGTTGTTGTCTAAAAT
GCAAGATACAGGACCTCCCCCGGAAGCAGTGTTAAAGAACCTCGATAGCT
CATCGACAGGCTCACCGTCTTTCCAAGCCTCAGATGTTGAAAAGTTTGGT
GAAATGTGTCCGATGCAGTAG
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protein sequence of Gvermi12251.t1

>Gvermi12251.t1 ID=Gvermi12251.t1|Name=Gvermi12251.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=257bp
MDDSELDGILDSALEAFDTVEDGSLVSSRTAEQSDVEETVRDAGLEREIQ
EESGTRSPVQTDETGKALEQALKALRELGVGEDQGRDQVNDEDMKLVEEF
MTSLSSSLGNVSPQNQLDDQRPNTTQTSEAGHVNGGRPEVEKLVDTIVGQ
LLSEDVLKVPMMHMRTAYDEWLPKNVDSLSAEERERYTKQQQLVRQICVK
YEDKADSAEIMELLSKMQDTGPPPEAVLKNLDSSSTGSPSFQASDVEKFG
EMCPMQ*
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mRNA from alignment at ScGOVlb_3404:3977977..3978747+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12251.t1 ID=Gvermi12251.t1|Name=Gvermi12251.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=771bp|location=Sequence derived from alignment at ScGOVlb_3404:3977977..3978747+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACGATTCAGAGCTTGATGGTATTCTAGATAGCGCCTTAGAGGCGTT
TGACACTGTTGAAGATGGTTCTCTCGTGTCTTCGAGAACGGCAGAACAGT
CCGATGTTGAAGAAACGGTGCGAGATGCGGGTCTGGAACGAGAGATACAA
GAAGAAAGTGGAACAAGGTCACCCGTCCAAACGGATGAAACAGGCAAAGC
ACTTGAACAAGCATTGAAGGCTCTCCGCGAATTAGGAGTTGGCGAAGATC
AAGGAAGAGATCAAGTGAATGATGAGGACATGAAGTTGGTCGAAGAATTT
ATGACAAGTCTGTCATCGTCTCTGGGCAATGTGTCCCCACAGAACCAATT
GGATGACCAACGACCCAACACTACCCAGACGAGCGAAGCTGGGCACGTCA
ACGGTGGACGGCCGGAAGTCGAAAAGCTGGTAGACACCATAGTCGGCCAG
CTGCTTTCCGAAGATGTTTTGAAAGTGCCAATGATGCACATGCGGACTGC
TTATGACGAGTGGCTCCCCAAAAATGTGGACTCCCTATCGGCCGAAGAGC
GCGAGCGGTACACTAAACAGCAGCAATTAGTGCGGCAAATTTGCGTCAAG
TATGAAGATAAAGCAGATTCCGCCGAGATCATGGAGTTGTTGTCTAAAAT
GCAAGATACAGGACCTCCCCCGGAAGCAGTGTTAAAGAACCTCGATAGCT
CATCGACAGGCTCACCGTCTTTCCAAGCCTCAGATGTTGAAAAGTTTGGT
GAAATGTGTCCGATGCAGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:3977977..3978747+

>Gvermi12251.t1 ID=Gvermi12251.t1|Name=Gvermi12251.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=771bp|location=Sequence derived from alignment at ScGOVlb_3404:3977977..3978747+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACGATTCAGAGCTTGATGGTATTCTAGATAGCGCCTTAGAGGCGTT
TGACACTGTTGAAGATGGTTCTCTCGTGTCTTCGAGAACGGCAGAACAGT
CCGATGTTGAAGAAACGGTGCGAGATGCGGGTCTGGAACGAGAGATACAA
GAAGAAAGTGGAACAAGGTCACCCGTCCAAACGGATGAAACAGGCAAAGC
ACTTGAACAAGCATTGAAGGCTCTCCGCGAATTAGGAGTTGGCGAAGATC
AAGGAAGAGATCAAGTGAATGATGAGGACATGAAGTTGGTCGAAGAATTT
ATGACAAGTCTGTCATCGTCTCTGGGCAATGTGTCCCCACAGAACCAATT
GGATGACCAACGACCCAACACTACCCAGACGAGCGAAGCTGGGCACGTCA
ACGGTGGACGGCCGGAAGTCGAAAAGCTGGTAGACACCATAGTCGGCCAG
CTGCTTTCCGAAGATGTTTTGAAAGTGCCAATGATGCACATGCGGACTGC
TTATGACGAGTGGCTCCCCAAAAATGTGGACTCCCTATCGGCCGAAGAGC
GCGAGCGGTACACTAAACAGCAGCAATTAGTGCGGCAAATTTGCGTCAAG
TATGAAGATAAAGCAGATTCCGCCGAGATCATGGAGTTGTTGTCTAAAAT
GCAAGATACAGGACCTCCCCCGGAAGCAGTGTTAAAGAACCTCGATAGCT
CATCGACAGGCTCACCGTCTTTCCAAGCCTCAGATGTTGAAAAGTTTGGT
GAAATGTGTCCGATGCAGTAG
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