Gvermi12248.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12248.t1
Unique NameGvermi12248.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length413
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3970788..3972166 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4792.ETI30853
PFAMsPkinase
Max annot lvl4776|Peronosporales
KEGG koko:K08829
Evalue1.23e-70
EggNOG OGsKOG0661@1|root,KOG0661@2759|Eukaryota,3Q8ZK@4776|Peronosporales
EC2.7.11.22
DescriptionProtein tyrosine kinase
COG categoryT
BRITEko00000,ko01000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12248Gvermi12248Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3970788..3972166 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12248.t1Gvermi12248.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3970788..3972166 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12248.t1.stop1Gvermi12248.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3970788..3970790 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12248.t1.CDS1Gvermi12248.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3970788..3971870 -
Gvermi12248.t1.CDS2Gvermi12248.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3971942..3972010 -
Gvermi12248.t1.CDS3Gvermi12248.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3972080..3972166 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12248.t1.exon1Gvermi12248.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3970788..3971870 -
Gvermi12248.t1.exon2Gvermi12248.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3971942..3972010 -
Gvermi12248.t1.exon3Gvermi12248.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3972080..3972166 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12248.t1.intron1Gvermi12248.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 3971871..3971941 -
Gvermi12248.t1.intron2Gvermi12248.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 3972011..3972079 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12248.t1.start1Gvermi12248.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3972164..3972166 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12248.t1 ID=Gvermi12248.t1|Name=Gvermi12248.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=413bp
MQRYRIGTPLGEGAFGTVCQATHRESGDKVAIKTLKDKCKDINAMMELPE
IKALRSLSHPNIVGCKELILDRKGYVHMVFELVLGGNLESLSRRREKPFS
ERQVRSVFYQLLQAASYMHGQQYLHRDIKPENILLESIRSDGGIRVKLAD
LGLSKKLSPNNTRPHTTYVATRWYRSPEILLRMSNYSYPSDMWAIGTVMA
EMIRLGDPLFPGNNEEEQLARIIALRGHPSMVDWRAGEAMMRKRRIRLPK
VTTSSLRTAIRDASPPTLQLISDLLEIDPEKRPTAAEALAYPLFVMNVSE
EEGVLRSRKRRKVVSEDIDSARTRDYPTTAFTYQTEGNPDVEEIDLLQAT
SLREHPRLMTPQDIVRPQQLYPSVPDSQAFNLSPLRRDHDDLERRFSRQR
EPAGLFSLHVVR*
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spliced messenger RNA

>Gvermi12248.t1 ID=Gvermi12248.t1|Name=Gvermi12248.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1239bp|location=Sequence derived from alignment at ScGOVlb_3404:3970788..3972166- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAAGATACCGCATCGGTACACCTCTCGGTGAAGGAGCCTTTGGCAC
GGTGTGTCAAGCAACTCATCGCGAATCAGGTGACAAAGTGGCAATCAAAA
CTCTCAAAGACAAATGCAAAGATATTAATGCCATGATGGAGCTTCCTGAA
ATTAAGGCTCTTCGTTCTCTTTCTCATCCAAATATTGTAGGATGCAAAGA
GCTAATTTTGGATCGAAAGGGCTATGTCCACATGGTTTTCGAGTTGGTGC
TTGGTGGAAACCTTGAAAGTCTTTCCCGGAGGCGTGAGAAGCCATTTTCA
GAGAGGCAAGTGCGATCTGTTTTTTATCAACTCCTGCAAGCCGCGAGCTA
TATGCACGGTCAGCAATACTTGCATCGGGATATCAAGCCAGAGAACATAC
TGTTGGAATCTATTCGATCGGACGGTGGCATCAGAGTGAAACTCGCCGAT
CTTGGTCTCTCAAAGAAACTGAGTCCGAACAACACTCGTCCACACACAAC
ATATGTGGCGACAAGATGGTATCGAAGCCCGGAAATTCTATTGCGCATGT
CAAATTATAGCTACCCCAGTGATATGTGGGCAATAGGTACAGTTATGGCT
GAGATGATTCGCCTTGGAGACCCCTTATTCCCTGGAAACAACGAAGAAGA
ACAGCTAGCCCGAATCATAGCTCTGAGAGGCCACCCGTCGATGGTCGATT
GGCGGGCAGGAGAAGCGATGATGCGGAAACGTAGGATTCGCCTTCCTAAA
GTTACTACCTCATCTCTCCGAACCGCAATCCGAGACGCCAGTCCTCCGAC
GCTACAACTTATATCCGACTTGCTTGAAATTGATCCAGAGAAGCGCCCTA
CTGCTGCTGAAGCACTCGCGTATCCTTTGTTTGTTATGAATGTCAGTGAA
GAAGAAGGTGTGCTCCGATCCCGAAAACGCCGAAAAGTTGTATCCGAAGA
CATTGATAGCGCCAGAACTAGAGATTACCCGACCACAGCTTTCACATACC
AAACCGAAGGTAACCCCGACGTTGAAGAAATTGACTTACTGCAAGCGACG
TCTCTCAGAGAGCACCCCAGGCTCATGACACCACAAGACATTGTTCGTCC
TCAACAACTCTATCCGTCGGTGCCGGATTCTCAAGCGTTTAATTTATCGC
CTTTACGAAGAGACCATGATGATCTAGAGCGACGGTTTTCACGCCAGCGG
GAACCTGCCGGGCTCTTTAGTCTTCATGTCGTTCGCTAA
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protein sequence of Gvermi12248.t1

>Gvermi12248.t1 ID=Gvermi12248.t1|Name=Gvermi12248.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=413bp
MQRYRIGTPLGEGAFGTVCQATHRESGDKVAIKTLKDKCKDINAMMELPE
IKALRSLSHPNIVGCKELILDRKGYVHMVFELVLGGNLESLSRRREKPFS
ERQVRSVFYQLLQAASYMHGQQYLHRDIKPENILLESIRSDGGIRVKLAD
LGLSKKLSPNNTRPHTTYVATRWYRSPEILLRMSNYSYPSDMWAIGTVMA
EMIRLGDPLFPGNNEEEQLARIIALRGHPSMVDWRAGEAMMRKRRIRLPK
VTTSSLRTAIRDASPPTLQLISDLLEIDPEKRPTAAEALAYPLFVMNVSE
EEGVLRSRKRRKVVSEDIDSARTRDYPTTAFTYQTEGNPDVEEIDLLQAT
SLREHPRLMTPQDIVRPQQLYPSVPDSQAFNLSPLRRDHDDLERRFSRQR
EPAGLFSLHVVR*
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mRNA from alignment at ScGOVlb_3404:3970788..3972166-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12248.t1 ID=Gvermi12248.t1|Name=Gvermi12248.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1379bp|location=Sequence derived from alignment at ScGOVlb_3404:3970788..3972166- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAAAGATACCGCATCGGTACACCTCTCGGTGAAGGAGCCTTTGGCAC
GGTGTGTCAAGCAACTCATCGCGAATCAGGTGACAAAGTGAGTTTTGAAC
GTCTTGATATTGTTCCATGGCAAGCTCAACTAATGAAACATTTCGTGATG
CCGTAGGTGGCAATCAAAACTCTCAAAGACAAATGCAAAGATATTAATGC
CATGATGGAGCTTCCTGAAATTAAGGTGAGTTCCCCATCCCCAACGAACC
AGGAAAGTCTTTATAACACTTCAATTATCGATCTGACTTTCAACAGGCTC
TTCGTTCTCTTTCTCATCCAAATATTGTAGGATGCAAAGAGCTAATTTTG
GATCGAAAGGGCTATGTCCACATGGTTTTCGAGTTGGTGCTTGGTGGAAA
CCTTGAAAGTCTTTCCCGGAGGCGTGAGAAGCCATTTTCAGAGAGGCAAG
TGCGATCTGTTTTTTATCAACTCCTGCAAGCCGCGAGCTATATGCACGGT
CAGCAATACTTGCATCGGGATATCAAGCCAGAGAACATACTGTTGGAATC
TATTCGATCGGACGGTGGCATCAGAGTGAAACTCGCCGATCTTGGTCTCT
CAAAGAAACTGAGTCCGAACAACACTCGTCCACACACAACATATGTGGCG
ACAAGATGGTATCGAAGCCCGGAAATTCTATTGCGCATGTCAAATTATAG
CTACCCCAGTGATATGTGGGCAATAGGTACAGTTATGGCTGAGATGATTC
GCCTTGGAGACCCCTTATTCCCTGGAAACAACGAAGAAGAACAGCTAGCC
CGAATCATAGCTCTGAGAGGCCACCCGTCGATGGTCGATTGGCGGGCAGG
AGAAGCGATGATGCGGAAACGTAGGATTCGCCTTCCTAAAGTTACTACCT
CATCTCTCCGAACCGCAATCCGAGACGCCAGTCCTCCGACGCTACAACTT
ATATCCGACTTGCTTGAAATTGATCCAGAGAAGCGCCCTACTGCTGCTGA
AGCACTCGCGTATCCTTTGTTTGTTATGAATGTCAGTGAAGAAGAAGGTG
TGCTCCGATCCCGAAAACGCCGAAAAGTTGTATCCGAAGACATTGATAGC
GCCAGAACTAGAGATTACCCGACCACAGCTTTCACATACCAAACCGAAGG
TAACCCCGACGTTGAAGAAATTGACTTACTGCAAGCGACGTCTCTCAGAG
AGCACCCCAGGCTCATGACACCACAAGACATTGTTCGTCCTCAACAACTC
TATCCGTCGGTGCCGGATTCTCAAGCGTTTAATTTATCGCCTTTACGAAG
AGACCATGATGATCTAGAGCGACGGTTTTCACGCCAGCGGGAACCTGCCG
GGCTCTTTAGTCTTCATGTCGTTCGCTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:3970788..3972166-

>Gvermi12248.t1 ID=Gvermi12248.t1|Name=Gvermi12248.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1239bp|location=Sequence derived from alignment at ScGOVlb_3404:3970788..3972166- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAAAGATACCGCATCGGTACACCTCTCGGTGAAGGAGCCTTTGGCAC
GGTGTGTCAAGCAACTCATCGCGAATCAGGTGACAAAGTGGCAATCAAAA
CTCTCAAAGACAAATGCAAAGATATTAATGCCATGATGGAGCTTCCTGAA
ATTAAGGCTCTTCGTTCTCTTTCTCATCCAAATATTGTAGGATGCAAAGA
GCTAATTTTGGATCGAAAGGGCTATGTCCACATGGTTTTCGAGTTGGTGC
TTGGTGGAAACCTTGAAAGTCTTTCCCGGAGGCGTGAGAAGCCATTTTCA
GAGAGGCAAGTGCGATCTGTTTTTTATCAACTCCTGCAAGCCGCGAGCTA
TATGCACGGTCAGCAATACTTGCATCGGGATATCAAGCCAGAGAACATAC
TGTTGGAATCTATTCGATCGGACGGTGGCATCAGAGTGAAACTCGCCGAT
CTTGGTCTCTCAAAGAAACTGAGTCCGAACAACACTCGTCCACACACAAC
ATATGTGGCGACAAGATGGTATCGAAGCCCGGAAATTCTATTGCGCATGT
CAAATTATAGCTACCCCAGTGATATGTGGGCAATAGGTACAGTTATGGCT
GAGATGATTCGCCTTGGAGACCCCTTATTCCCTGGAAACAACGAAGAAGA
ACAGCTAGCCCGAATCATAGCTCTGAGAGGCCACCCGTCGATGGTCGATT
GGCGGGCAGGAGAAGCGATGATGCGGAAACGTAGGATTCGCCTTCCTAAA
GTTACTACCTCATCTCTCCGAACCGCAATCCGAGACGCCAGTCCTCCGAC
GCTACAACTTATATCCGACTTGCTTGAAATTGATCCAGAGAAGCGCCCTA
CTGCTGCTGAAGCACTCGCGTATCCTTTGTTTGTTATGAATGTCAGTGAA
GAAGAAGGTGTGCTCCGATCCCGAAAACGCCGAAAAGTTGTATCCGAAGA
CATTGATAGCGCCAGAACTAGAGATTACCCGACCACAGCTTTCACATACC
AAACCGAAGGTAACCCCGACGTTGAAGAAATTGACTTACTGCAAGCGACG
TCTCTCAGAGAGCACCCCAGGCTCATGACACCACAAGACATTGTTCGTCC
TCAACAACTCTATCCGTCGGTGCCGGATTCTCAAGCGTTTAATTTATCGC
CTTTACGAAGAGACCATGATGATCTAGAGCGACGGTTTTCACGCCAGCGG
GAACCTGCCGGGCTCTTTAGTCTTCATGTCGTTCGCTAA
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