Gvermi12245.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12245.t1
Unique NameGvermi12245.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length490
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3962223..3963692 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12245Gvermi12245Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3962223..3963692 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12245.t1.stop1Gvermi12245.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3962223..3962225 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12245.t1.CDS1Gvermi12245.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3962223..3963692 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12245.t1.exon1Gvermi12245.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3962223..3963692 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12245.t1.start1Gvermi12245.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3963690..3963692 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12245.t1Gvermi12245.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3962223..3963692 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12245.t1 ID=Gvermi12245.t1|Name=Gvermi12245.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=490bp
MLKYTATYFDDHDTGLKSRLPPKVNGGRAYRIPKTWNRLHSPWLKKNAPE
LKNPKQSRHRYLYGPSRLMSSDGIGHSMCAVNLEYNLALNMNLTYTHRVG
FYSSLSRDNRMAVEEFFGWGIGEVPRRNIQKDGCTPVGGQWPDERNLYDC
HMCDKPLQNGTLNIESIVEIPSILLSSNCPSFSWCRAKLERFLEKNSISN
TIFQLPASICSPQKTDANFLATRNLFYTKYWNKHGRLPWRHTHDVSKNLQ
SQSKRGLLLSPRELNVAIHVRRGDFLKAASGRKVTKDKVFATIITRVLTI
VHNVGGSLAEMKIAIHIYSEGQLKTKNAFSTHAVQLQDKKYYDHTGEPRD
EDWWTSLILSTIQDDPFSSGGWEEKFKVKLHVSEDTLRSLHNMIAADVFI
GSDSGLSTHLVWSLSRGVSLVPHSSSIDNEIGKKGYLCCSIPFKNEDGYF
SLSTFRWYWEAYAFANEDSARHSLHGSKETHVMPNAVSL*
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spliced messenger RNA

>Gvermi12245.t1 ID=Gvermi12245.t1|Name=Gvermi12245.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1470bp|location=Sequence derived from alignment at ScGOVlb_3404:3962223..3963692- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCAAGTATACGGCAACATATTTCGATGACCATGACACAGGATTGAA
ATCGCGTCTGCCTCCCAAAGTCAATGGTGGTAGAGCGTACAGAATACCAA
AAACCTGGAACCGTCTACATTCCCCATGGTTAAAGAAAAACGCTCCAGAA
CTAAAAAATCCGAAGCAATCCCGCCATCGATATCTTTACGGACCTTCACG
CTTGATGTCTAGTGATGGTATTGGGCACTCAATGTGTGCAGTCAACCTTG
AATACAATCTTGCCTTGAACATGAATCTTACATACACTCATAGGGTAGGT
TTCTACTCATCTCTATCCCGCGACAACCGAATGGCAGTGGAAGAGTTCTT
CGGATGGGGCATCGGAGAAGTTCCTAGGAGAAATATTCAGAAAGACGGGT
GTACTCCAGTTGGAGGGCAGTGGCCGGATGAACGTAACCTGTACGACTGT
CACATGTGTGACAAACCTTTGCAGAACGGTACTTTAAACATTGAAAGCAT
AGTTGAGATACCATCCATTCTTCTAAGTTCCAACTGCCCATCGTTCTCCT
GGTGCCGTGCAAAGCTTGAAAGATTCCTGGAGAAAAATTCCATAAGTAAC
ACTATCTTTCAACTGCCCGCTTCCATATGCAGTCCTCAAAAAACAGATGC
AAATTTCCTTGCAACCCGGAATTTGTTCTACACAAAGTATTGGAATAAGC
ACGGACGCCTGCCGTGGAGACATACCCATGATGTGAGCAAAAACCTCCAG
TCACAATCGAAACGAGGCTTACTGCTAAGCCCGAGGGAACTAAACGTTGC
GATTCATGTGCGTCGTGGAGATTTCTTGAAGGCAGCATCAGGACGAAAAG
TTACCAAAGACAAGGTATTCGCGACAATTATAACCAGAGTTCTAACAATT
GTACATAATGTTGGAGGGAGTCTGGCAGAGATGAAGATAGCAATCCATAT
ATATAGCGAAGGACAGTTAAAAACGAAAAATGCGTTCTCTACTCATGCGG
TACAGCTGCAAGACAAAAAGTACTATGATCACACTGGAGAACCAAGAGAC
GAAGATTGGTGGACGTCTTTGATTCTATCAACCATTCAAGATGATCCGTT
CTCGTCCGGGGGCTGGGAAGAGAAATTTAAGGTCAAGTTGCACGTGAGTG
AGGATACGCTTCGATCTCTGCACAACATGATTGCAGCTGACGTCTTCATC
GGAAGTGACAGTGGTCTGAGCACGCATCTGGTGTGGTCCTTGTCACGCGG
AGTTAGCCTTGTCCCTCACTCCAGTTCAATTGACAATGAAATAGGAAAGA
AAGGGTATCTCTGTTGTTCAATACCATTCAAGAATGAGGATGGATACTTT
TCACTGTCCACTTTTCGATGGTATTGGGAAGCGTATGCATTTGCCAATGA
AGACTCTGCTCGGCATTCTCTTCATGGAAGCAAGGAAACCCATGTCATGC
CGAACGCAGTGTCGTTGTAA
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protein sequence of Gvermi12245.t1

>Gvermi12245.t1 ID=Gvermi12245.t1|Name=Gvermi12245.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=490bp
MLKYTATYFDDHDTGLKSRLPPKVNGGRAYRIPKTWNRLHSPWLKKNAPE
LKNPKQSRHRYLYGPSRLMSSDGIGHSMCAVNLEYNLALNMNLTYTHRVG
FYSSLSRDNRMAVEEFFGWGIGEVPRRNIQKDGCTPVGGQWPDERNLYDC
HMCDKPLQNGTLNIESIVEIPSILLSSNCPSFSWCRAKLERFLEKNSISN
TIFQLPASICSPQKTDANFLATRNLFYTKYWNKHGRLPWRHTHDVSKNLQ
SQSKRGLLLSPRELNVAIHVRRGDFLKAASGRKVTKDKVFATIITRVLTI
VHNVGGSLAEMKIAIHIYSEGQLKTKNAFSTHAVQLQDKKYYDHTGEPRD
EDWWTSLILSTIQDDPFSSGGWEEKFKVKLHVSEDTLRSLHNMIAADVFI
GSDSGLSTHLVWSLSRGVSLVPHSSSIDNEIGKKGYLCCSIPFKNEDGYF
SLSTFRWYWEAYAFANEDSARHSLHGSKETHVMPNAVSL*
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mRNA from alignment at ScGOVlb_3404:3962223..3963692-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12245.t1 ID=Gvermi12245.t1|Name=Gvermi12245.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1470bp|location=Sequence derived from alignment at ScGOVlb_3404:3962223..3963692- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTCAAGTATACGGCAACATATTTCGATGACCATGACACAGGATTGAA
ATCGCGTCTGCCTCCCAAAGTCAATGGTGGTAGAGCGTACAGAATACCAA
AAACCTGGAACCGTCTACATTCCCCATGGTTAAAGAAAAACGCTCCAGAA
CTAAAAAATCCGAAGCAATCCCGCCATCGATATCTTTACGGACCTTCACG
CTTGATGTCTAGTGATGGTATTGGGCACTCAATGTGTGCAGTCAACCTTG
AATACAATCTTGCCTTGAACATGAATCTTACATACACTCATAGGGTAGGT
TTCTACTCATCTCTATCCCGCGACAACCGAATGGCAGTGGAAGAGTTCTT
CGGATGGGGCATCGGAGAAGTTCCTAGGAGAAATATTCAGAAAGACGGGT
GTACTCCAGTTGGAGGGCAGTGGCCGGATGAACGTAACCTGTACGACTGT
CACATGTGTGACAAACCTTTGCAGAACGGTACTTTAAACATTGAAAGCAT
AGTTGAGATACCATCCATTCTTCTAAGTTCCAACTGCCCATCGTTCTCCT
GGTGCCGTGCAAAGCTTGAAAGATTCCTGGAGAAAAATTCCATAAGTAAC
ACTATCTTTCAACTGCCCGCTTCCATATGCAGTCCTCAAAAAACAGATGC
AAATTTCCTTGCAACCCGGAATTTGTTCTACACAAAGTATTGGAATAAGC
ACGGACGCCTGCCGTGGAGACATACCCATGATGTGAGCAAAAACCTCCAG
TCACAATCGAAACGAGGCTTACTGCTAAGCCCGAGGGAACTAAACGTTGC
GATTCATGTGCGTCGTGGAGATTTCTTGAAGGCAGCATCAGGACGAAAAG
TTACCAAAGACAAGGTATTCGCGACAATTATAACCAGAGTTCTAACAATT
GTACATAATGTTGGAGGGAGTCTGGCAGAGATGAAGATAGCAATCCATAT
ATATAGCGAAGGACAGTTAAAAACGAAAAATGCGTTCTCTACTCATGCGG
TACAGCTGCAAGACAAAAAGTACTATGATCACACTGGAGAACCAAGAGAC
GAAGATTGGTGGACGTCTTTGATTCTATCAACCATTCAAGATGATCCGTT
CTCGTCCGGGGGCTGGGAAGAGAAATTTAAGGTCAAGTTGCACGTGAGTG
AGGATACGCTTCGATCTCTGCACAACATGATTGCAGCTGACGTCTTCATC
GGAAGTGACAGTGGTCTGAGCACGCATCTGGTGTGGTCCTTGTCACGCGG
AGTTAGCCTTGTCCCTCACTCCAGTTCAATTGACAATGAAATAGGAAAGA
AAGGGTATCTCTGTTGTTCAATACCATTCAAGAATGAGGATGGATACTTT
TCACTGTCCACTTTTCGATGGTATTGGGAAGCGTATGCATTTGCCAATGA
AGACTCTGCTCGGCATTCTCTTCATGGAAGCAAGGAAACCCATGTCATGC
CGAACGCAGTGTCGTTGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:3962223..3963692-

>Gvermi12245.t1 ID=Gvermi12245.t1|Name=Gvermi12245.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1470bp|location=Sequence derived from alignment at ScGOVlb_3404:3962223..3963692- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTCAAGTATACGGCAACATATTTCGATGACCATGACACAGGATTGAA
ATCGCGTCTGCCTCCCAAAGTCAATGGTGGTAGAGCGTACAGAATACCAA
AAACCTGGAACCGTCTACATTCCCCATGGTTAAAGAAAAACGCTCCAGAA
CTAAAAAATCCGAAGCAATCCCGCCATCGATATCTTTACGGACCTTCACG
CTTGATGTCTAGTGATGGTATTGGGCACTCAATGTGTGCAGTCAACCTTG
AATACAATCTTGCCTTGAACATGAATCTTACATACACTCATAGGGTAGGT
TTCTACTCATCTCTATCCCGCGACAACCGAATGGCAGTGGAAGAGTTCTT
CGGATGGGGCATCGGAGAAGTTCCTAGGAGAAATATTCAGAAAGACGGGT
GTACTCCAGTTGGAGGGCAGTGGCCGGATGAACGTAACCTGTACGACTGT
CACATGTGTGACAAACCTTTGCAGAACGGTACTTTAAACATTGAAAGCAT
AGTTGAGATACCATCCATTCTTCTAAGTTCCAACTGCCCATCGTTCTCCT
GGTGCCGTGCAAAGCTTGAAAGATTCCTGGAGAAAAATTCCATAAGTAAC
ACTATCTTTCAACTGCCCGCTTCCATATGCAGTCCTCAAAAAACAGATGC
AAATTTCCTTGCAACCCGGAATTTGTTCTACACAAAGTATTGGAATAAGC
ACGGACGCCTGCCGTGGAGACATACCCATGATGTGAGCAAAAACCTCCAG
TCACAATCGAAACGAGGCTTACTGCTAAGCCCGAGGGAACTAAACGTTGC
GATTCATGTGCGTCGTGGAGATTTCTTGAAGGCAGCATCAGGACGAAAAG
TTACCAAAGACAAGGTATTCGCGACAATTATAACCAGAGTTCTAACAATT
GTACATAATGTTGGAGGGAGTCTGGCAGAGATGAAGATAGCAATCCATAT
ATATAGCGAAGGACAGTTAAAAACGAAAAATGCGTTCTCTACTCATGCGG
TACAGCTGCAAGACAAAAAGTACTATGATCACACTGGAGAACCAAGAGAC
GAAGATTGGTGGACGTCTTTGATTCTATCAACCATTCAAGATGATCCGTT
CTCGTCCGGGGGCTGGGAAGAGAAATTTAAGGTCAAGTTGCACGTGAGTG
AGGATACGCTTCGATCTCTGCACAACATGATTGCAGCTGACGTCTTCATC
GGAAGTGACAGTGGTCTGAGCACGCATCTGGTGTGGTCCTTGTCACGCGG
AGTTAGCCTTGTCCCTCACTCCAGTTCAATTGACAATGAAATAGGAAAGA
AAGGGTATCTCTGTTGTTCAATACCATTCAAGAATGAGGATGGATACTTT
TCACTGTCCACTTTTCGATGGTATTGGGAAGCGTATGCATTTGCCAATGA
AGACTCTGCTCGGCATTCTCTTCATGGAAGCAAGGAAACCCATGTCATGC
CGAACGCAGTGTCGTTGTAA
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