Gvermi12214.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12214.t1
Unique Name	Gvermi12214.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	519

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:3866810..3868366 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMO059CT
Preferred name	DNAJC21
PFAMs	DnaJ,zf-C2H2_2,zf-C2H2_jaz,zf-met
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00005,RC00059,RC00397
KEGG ko	ko:K00728,ko:K09506
KEGG Reaction	R04072,R07620,R11399
KEGG Pathway	ko00514,ko00515,ko01100,map00514,map00515,map01100
GOs	GO:0000054,GO:0000055,GO:0001671,GO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006403,GO:0006405,GO:0006457,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006897,GO:0006913,GO:0008047,GO:0008104,GO:0008150,GO:0008152,GO:0008361,GO:0009987,GO:0010467,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016072,GO:0016192,GO:0022613,GO:0030234,GO:0030684,GO:0030687,GO:0031503,GO:0031974,GO:0031981,GO:0032535,GO:0032781,GO:0032991,GO:0033036,GO:0033750,GO:0034470,GO:0034613,GO:0034641,GO:0034660,GO:0042254,GO:0042273,GO:0042886,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043462,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046483,GO:0046907,GO:0050657,GO:0050658,GO:0050790,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051336,GO:0051345,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0060589,GO:0060590,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0090066,GO:0090304,GO:0098657,GO:0098772,GO:1901360,GO:1990904
Evalue	8.33e-66
EggNOG OGs	KOG0717@1\|root,KOG0717@2759\|Eukaryota
EC	2.4.1.109
Description	zinc ion binding
COG category	A
CAZy	GT39
BRITE	ko00000,ko00001,ko01000,ko01003,ko03009,ko03110

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12214	Gvermi12214	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 3866810..3868366 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12214.t1.start1	Gvermi12214.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 3866810..3866812 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12214.t1.CDS1	Gvermi12214.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 3866810..3868366 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12214.t1.exon1	Gvermi12214.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 3866810..3868366 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12214.t1.stop1	Gvermi12214.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 3868364..3868366 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12214.t1	Gvermi12214.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 3866810..3868366 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:3866810..3868366+
coding sequence from alignment at ScGOVlb_3404:3866810..3868366+

mRNA sequence

>Gvermi12214.t1 ID=Gvermi12214.t1|Name=Gvermi12214.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=519bp
MAPPPKCLYETLNIPLTATESEIKKAYRLQALTHHPDKNPERQEQAEEVF
KQVQNAYDVLSDPHERAWYDAHRDQILRGKDPNSEDVEASSATEVNLFAH
FSSSAWKGYDGDGGFYDVFETLFEQLWKEETAASEKQKARPAPKFGNTDT
SWEDVRDFYREWESFSSSKSFGFADKWNLADAPNREYRRAMEKENKRQRA
KFKKEFNNDVRELVKFVKKRDPRVVKRRAQEDKEREERERARKHRETLEK
EEKRDKAQRVREAREAVLEEEADALDEILAGIALDEKIERRQQRNRAKEK
SDEESDDDAEEALEDDESDLEDEEQFSSEEEEPLEDLYCVACKKAFRTSA
QKADHERSKKHKAAMAKIKRQVLKEEEDYLAMGDPGATVGQPASDRSEDI
EPGAPNAQTSNSKKKRKRRARMQATTGLGEVAVDDGQRSESEKNGLKEER
TEDVDDENAEHKERVLSKKEKRKLREEKKKAAASVHKCNVCAEEFPSRTK
LMKHVNAKGHALHVDQRR*

spliced messenger RNA

>Gvermi12214.t1 ID=Gvermi12214.t1|Name=Gvermi12214.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1557bp|location=Sequence derived from alignment at ScGOVlb_3404:3866810..3868366+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCACCCCCAAAATGTCTTTACGAGACCTTGAATATCCCTCTCAC
TGCTACAGAAAGTGAAATCAAGAAAGCTTACAGACTTCAAGCTTTGACGC
ACCATCCGGACAAGAATCCCGAACGTCAAGAGCAGGCCGAAGAAGTATTC
AAGCAAGTTCAGAATGCATACGACGTCCTTTCGGATCCACATGAGCGAGC
CTGGTACGATGCTCATCGTGATCAAATTTTGCGTGGAAAAGATCCGAATT
CAGAAGACGTGGAGGCCTCTAGTGCTACAGAAGTCAACCTTTTTGCGCAC
TTCAGCAGCTCGGCATGGAAAGGATATGATGGCGATGGAGGTTTCTATGA
CGTCTTCGAAACTCTTTTTGAGCAATTGTGGAAGGAGGAAACTGCCGCTT
CCGAGAAACAGAAAGCGAGACCCGCCCCAAAGTTTGGTAATACGGACACA
TCGTGGGAGGATGTGCGTGATTTTTACCGAGAATGGGAATCGTTTTCCTC
ATCGAAATCGTTTGGCTTTGCAGATAAGTGGAATCTGGCGGATGCACCAA
ACAGAGAGTATCGAAGAGCTATGGAGAAAGAAAACAAGCGTCAAAGGGCC
AAGTTCAAGAAGGAATTTAATAATGACGTTCGAGAACTCGTGAAGTTTGT
TAAAAAGAGGGACCCTAGAGTGGTTAAGCGACGCGCTCAAGAAGACAAAG
AGCGAGAAGAGAGAGAACGGGCCAGAAAACATAGAGAAACACTCGAGAAA
GAGGAAAAAAGAGATAAAGCGCAGCGCGTGCGAGAGGCCAGGGAGGCGGT
TCTCGAGGAAGAAGCAGACGCACTTGATGAAATCTTGGCAGGTATTGCTC
TAGATGAAAAAATCGAAAGAAGACAGCAAAGAAATAGAGCAAAAGAAAAG
AGCGATGAAGAATCTGATGATGACGCAGAGGAAGCGCTGGAGGATGATGA
ATCTGATTTGGAAGACGAAGAGCAGTTCTCTAGTGAGGAAGAAGAACCTT
TAGAGGACTTGTACTGTGTGGCATGTAAAAAGGCTTTCCGTACATCTGCG
CAAAAAGCAGATCATGAACGTTCTAAGAAACACAAGGCTGCAATGGCGAA
AATCAAACGTCAGGTTTTAAAAGAGGAGGAAGATTATTTAGCGATGGGTG
ATCCCGGTGCTACGGTCGGTCAGCCTGCATCTGATCGCAGCGAAGACATA
GAGCCTGGGGCTCCGAATGCTCAAACTTCAAACTCCAAGAAGAAGCGAAA
ACGAAGGGCACGAATGCAGGCGACGACTGGCCTCGGAGAAGTGGCTGTGG
ATGATGGACAGAGAAGCGAAAGCGAAAAAAATGGTCTGAAAGAAGAAAGA
ACAGAAGATGTGGATGATGAAAACGCAGAGCACAAGGAGCGTGTTTTATC
GAAAAAAGAGAAACGAAAGCTTAGAGAAGAGAAGAAGAAGGCTGCTGCAT
CTGTGCACAAGTGCAATGTTTGTGCTGAAGAATTTCCGTCGCGAACAAAG
CTCATGAAACATGTGAACGCAAAGGGTCATGCTCTGCATGTTGACCAACG
ACGATAA

protein sequence of Gvermi12214.t1

>Gvermi12214.t1 ID=Gvermi12214.t1|Name=Gvermi12214.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=519bp
MAPPPKCLYETLNIPLTATESEIKKAYRLQALTHHPDKNPERQEQAEEVF
KQVQNAYDVLSDPHERAWYDAHRDQILRGKDPNSEDVEASSATEVNLFAH
FSSSAWKGYDGDGGFYDVFETLFEQLWKEETAASEKQKARPAPKFGNTDT
SWEDVRDFYREWESFSSSKSFGFADKWNLADAPNREYRRAMEKENKRQRA
KFKKEFNNDVRELVKFVKKRDPRVVKRRAQEDKEREERERARKHRETLEK
EEKRDKAQRVREAREAVLEEEADALDEILAGIALDEKIERRQQRNRAKEK
SDEESDDDAEEALEDDESDLEDEEQFSSEEEEPLEDLYCVACKKAFRTSA
QKADHERSKKHKAAMAKIKRQVLKEEEDYLAMGDPGATVGQPASDRSEDI
EPGAPNAQTSNSKKKRKRRARMQATTGLGEVAVDDGQRSESEKNGLKEER
TEDVDDENAEHKERVLSKKEKRKLREEKKKAAASVHKCNVCAEEFPSRTK
LMKHVNAKGHALHVDQRR*

mRNA from alignment at ScGOVlb_3404:3866810..3868366+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12214.t1 ID=Gvermi12214.t1|Name=Gvermi12214.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1557bp|location=Sequence derived from alignment at ScGOVlb_3404:3866810..3868366+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCCACCCCCAAAATGTCTTTACGAGACCTTGAATATCCCTCTCAC
TGCTACAGAAAGTGAAATCAAGAAAGCTTACAGACTTCAAGCTTTGACGC
ACCATCCGGACAAGAATCCCGAACGTCAAGAGCAGGCCGAAGAAGTATTC
AAGCAAGTTCAGAATGCATACGACGTCCTTTCGGATCCACATGAGCGAGC
CTGGTACGATGCTCATCGTGATCAAATTTTGCGTGGAAAAGATCCGAATT
CAGAAGACGTGGAGGCCTCTAGTGCTACAGAAGTCAACCTTTTTGCGCAC
TTCAGCAGCTCGGCATGGAAAGGATATGATGGCGATGGAGGTTTCTATGA
CGTCTTCGAAACTCTTTTTGAGCAATTGTGGAAGGAGGAAACTGCCGCTT
CCGAGAAACAGAAAGCGAGACCCGCCCCAAAGTTTGGTAATACGGACACA
TCGTGGGAGGATGTGCGTGATTTTTACCGAGAATGGGAATCGTTTTCCTC
ATCGAAATCGTTTGGCTTTGCAGATAAGTGGAATCTGGCGGATGCACCAA
ACAGAGAGTATCGAAGAGCTATGGAGAAAGAAAACAAGCGTCAAAGGGCC
AAGTTCAAGAAGGAATTTAATAATGACGTTCGAGAACTCGTGAAGTTTGT
TAAAAAGAGGGACCCTAGAGTGGTTAAGCGACGCGCTCAAGAAGACAAAG
AGCGAGAAGAGAGAGAACGGGCCAGAAAACATAGAGAAACACTCGAGAAA
GAGGAAAAAAGAGATAAAGCGCAGCGCGTGCGAGAGGCCAGGGAGGCGGT
TCTCGAGGAAGAAGCAGACGCACTTGATGAAATCTTGGCAGGTATTGCTC
TAGATGAAAAAATCGAAAGAAGACAGCAAAGAAATAGAGCAAAAGAAAAG
AGCGATGAAGAATCTGATGATGACGCAGAGGAAGCGCTGGAGGATGATGA
ATCTGATTTGGAAGACGAAGAGCAGTTCTCTAGTGAGGAAGAAGAACCTT
TAGAGGACTTGTACTGTGTGGCATGTAAAAAGGCTTTCCGTACATCTGCG
CAAAAAGCAGATCATGAACGTTCTAAGAAACACAAGGCTGCAATGGCGAA
AATCAAACGTCAGGTTTTAAAAGAGGAGGAAGATTATTTAGCGATGGGTG
ATCCCGGTGCTACGGTCGGTCAGCCTGCATCTGATCGCAGCGAAGACATA
GAGCCTGGGGCTCCGAATGCTCAAACTTCAAACTCCAAGAAGAAGCGAAA
ACGAAGGGCACGAATGCAGGCGACGACTGGCCTCGGAGAAGTGGCTGTGG
ATGATGGACAGAGAAGCGAAAGCGAAAAAAATGGTCTGAAAGAAGAAAGA
ACAGAAGATGTGGATGATGAAAACGCAGAGCACAAGGAGCGTGTTTTATC
GAAAAAAGAGAAACGAAAGCTTAGAGAAGAGAAGAAGAAGGCTGCTGCAT
CTGTGCACAAGTGCAATGTTTGTGCTGAAGAATTTCCGTCGCGAACAAAG
CTCATGAAACATGTGAACGCAAAGGGTCATGCTCTGCATGTTGACCAACG
ACGATAA

Coding sequence (CDS) from alignment at ScGOVlb_3404:3866810..3868366+

>Gvermi12214.t1 ID=Gvermi12214.t1|Name=Gvermi12214.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1557bp|location=Sequence derived from alignment at ScGOVlb_3404:3866810..3868366+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCCACCCCCAAAATGTCTTTACGAGACCTTGAATATCCCTCTCAC
TGCTACAGAAAGTGAAATCAAGAAAGCTTACAGACTTCAAGCTTTGACGC
ACCATCCGGACAAGAATCCCGAACGTCAAGAGCAGGCCGAAGAAGTATTC
AAGCAAGTTCAGAATGCATACGACGTCCTTTCGGATCCACATGAGCGAGC
CTGGTACGATGCTCATCGTGATCAAATTTTGCGTGGAAAAGATCCGAATT
CAGAAGACGTGGAGGCCTCTAGTGCTACAGAAGTCAACCTTTTTGCGCAC
TTCAGCAGCTCGGCATGGAAAGGATATGATGGCGATGGAGGTTTCTATGA
CGTCTTCGAAACTCTTTTTGAGCAATTGTGGAAGGAGGAAACTGCCGCTT
CCGAGAAACAGAAAGCGAGACCCGCCCCAAAGTTTGGTAATACGGACACA
TCGTGGGAGGATGTGCGTGATTTTTACCGAGAATGGGAATCGTTTTCCTC
ATCGAAATCGTTTGGCTTTGCAGATAAGTGGAATCTGGCGGATGCACCAA
ACAGAGAGTATCGAAGAGCTATGGAGAAAGAAAACAAGCGTCAAAGGGCC
AAGTTCAAGAAGGAATTTAATAATGACGTTCGAGAACTCGTGAAGTTTGT
TAAAAAGAGGGACCCTAGAGTGGTTAAGCGACGCGCTCAAGAAGACAAAG
AGCGAGAAGAGAGAGAACGGGCCAGAAAACATAGAGAAACACTCGAGAAA
GAGGAAAAAAGAGATAAAGCGCAGCGCGTGCGAGAGGCCAGGGAGGCGGT
TCTCGAGGAAGAAGCAGACGCACTTGATGAAATCTTGGCAGGTATTGCTC
TAGATGAAAAAATCGAAAGAAGACAGCAAAGAAATAGAGCAAAAGAAAAG
AGCGATGAAGAATCTGATGATGACGCAGAGGAAGCGCTGGAGGATGATGA
ATCTGATTTGGAAGACGAAGAGCAGTTCTCTAGTGAGGAAGAAGAACCTT
TAGAGGACTTGTACTGTGTGGCATGTAAAAAGGCTTTCCGTACATCTGCG
CAAAAAGCAGATCATGAACGTTCTAAGAAACACAAGGCTGCAATGGCGAA
AATCAAACGTCAGGTTTTAAAAGAGGAGGAAGATTATTTAGCGATGGGTG
ATCCCGGTGCTACGGTCGGTCAGCCTGCATCTGATCGCAGCGAAGACATA
GAGCCTGGGGCTCCGAATGCTCAAACTTCAAACTCCAAGAAGAAGCGAAA
ACGAAGGGCACGAATGCAGGCGACGACTGGCCTCGGAGAAGTGGCTGTGG
ATGATGGACAGAGAAGCGAAAGCGAAAAAAATGGTCTGAAAGAAGAAAGA
ACAGAAGATGTGGATGATGAAAACGCAGAGCACAAGGAGCGTGTTTTATC
GAAAAAAGAGAAACGAAAGCTTAGAGAAGAGAAGAAGAAGGCTGCTGCAT
CTGTGCACAAGTGCAATGTTTGTGCTGAAGAATTTCCGTCGCGAACAAAG
CTCATGAAACATGTGAACGCAAAGGGTCATGCTCTGCATGTTGACCAACG
ACGATAA