Gvermi12213.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12213.t1
Unique NameGvermi12213.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length310
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3865177..3866106 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog57918.XP_004299015.1
PFAMsNAD_binding_1
Max annot lvl35493|Streptophyta
Evalue2e-53
EggNOG OGsCOG0543@1|root,2QQ7C@2759|Eukaryota,37SP4@33090|Viridiplantae,3GAIF@35493|Streptophyta,4JNHE@91835|fabids
DescriptionFruit protein
COG categoryCH
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12213Gvermi12213Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3865177..3866106 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12213.t1.stop1Gvermi12213.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3865177..3865179 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12213.t1.CDS1Gvermi12213.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3865177..3866106 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12213.t1.exon1Gvermi12213.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3865177..3866106 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12213.t1.start1Gvermi12213.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3866104..3866106 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12213.t1Gvermi12213.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3865177..3866106 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12213.t1 ID=Gvermi12213.t1|Name=Gvermi12213.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=310bp
MHKAQNAFVASTPLALRKRPFSLCRALRPQSQPATHPSTRPQTTLPLHHL
KPIASARPQQETPWNRVKIVENSFHCEGHRYIVVNVGVSGEKGTLVDSYR
VPGMFVQMRASADDKPAFFAMSCAPNLEGYFEFLIKESEQSERICKLKEG
SMVEMTPVMGNGFPMSKLKMADYDEDVKPRDILLFATGTGIAPIRAAIES
PLNGLNVPLRRSVKLFYGARYPNRMAFMERFAMWQVDGVEIIPVMSRPQD
AFDKWDGETGYVQDVLKKVGVDKPKQTAALLCGVKGMQEDVTKILIEAGV
PADRILLNF*
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spliced messenger RNA

>Gvermi12213.t1 ID=Gvermi12213.t1|Name=Gvermi12213.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=930bp|location=Sequence derived from alignment at ScGOVlb_3404:3865177..3866106- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATAAGGCTCAGAACGCATTTGTTGCATCCACTCCCCTCGCGCTCAG
AAAGCGTCCCTTCTCGCTATGCCGAGCTCTGCGACCACAATCGCAACCAG
CAACACACCCCTCAACCCGCCCTCAAACCACGCTTCCTTTGCATCACTTG
AAGCCGATCGCTTCAGCCAGGCCTCAGCAAGAAACTCCTTGGAATCGTGT
CAAAATAGTTGAAAACTCTTTTCACTGCGAGGGTCATCGCTACATTGTCG
TCAATGTTGGCGTAAGTGGAGAAAAAGGTACGCTTGTCGACTCGTATCGA
GTGCCGGGTATGTTTGTGCAAATGCGAGCTTCCGCGGATGATAAGCCTGC
CTTCTTTGCTATGTCATGTGCACCAAACCTAGAAGGATATTTCGAGTTTC
TCATCAAGGAATCTGAGCAGTCGGAACGCATTTGCAAATTGAAGGAAGGG
AGCATGGTGGAAATGACTCCAGTCATGGGAAACGGGTTTCCCATGTCTAA
ACTAAAGATGGCTGACTACGACGAAGATGTGAAACCGAGAGATATACTAC
TATTCGCAACGGGAACGGGCATTGCACCAATTCGAGCTGCGATAGAGTCT
CCGCTGAATGGACTCAACGTTCCCTTGCGAAGATCAGTAAAACTATTCTA
CGGGGCCAGATATCCAAATAGAATGGCTTTTATGGAGAGATTCGCAATGT
GGCAAGTGGACGGTGTAGAAATTATCCCGGTTATGTCTAGACCTCAAGAC
GCGTTTGATAAGTGGGATGGGGAAACAGGCTATGTTCAGGATGTACTAAA
AAAGGTAGGCGTCGACAAGCCAAAGCAAACCGCTGCTTTACTTTGTGGGG
TGAAAGGAATGCAAGAGGATGTCACGAAGATACTCATTGAGGCTGGTGTT
CCCGCGGACCGAATTCTTCTCAACTTCTGA
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protein sequence of Gvermi12213.t1

>Gvermi12213.t1 ID=Gvermi12213.t1|Name=Gvermi12213.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=310bp
MHKAQNAFVASTPLALRKRPFSLCRALRPQSQPATHPSTRPQTTLPLHHL
KPIASARPQQETPWNRVKIVENSFHCEGHRYIVVNVGVSGEKGTLVDSYR
VPGMFVQMRASADDKPAFFAMSCAPNLEGYFEFLIKESEQSERICKLKEG
SMVEMTPVMGNGFPMSKLKMADYDEDVKPRDILLFATGTGIAPIRAAIES
PLNGLNVPLRRSVKLFYGARYPNRMAFMERFAMWQVDGVEIIPVMSRPQD
AFDKWDGETGYVQDVLKKVGVDKPKQTAALLCGVKGMQEDVTKILIEAGV
PADRILLNF*
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mRNA from alignment at ScGOVlb_3404:3865177..3866106-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12213.t1 ID=Gvermi12213.t1|Name=Gvermi12213.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=930bp|location=Sequence derived from alignment at ScGOVlb_3404:3865177..3866106- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCATAAGGCTCAGAACGCATTTGTTGCATCCACTCCCCTCGCGCTCAG
AAAGCGTCCCTTCTCGCTATGCCGAGCTCTGCGACCACAATCGCAACCAG
CAACACACCCCTCAACCCGCCCTCAAACCACGCTTCCTTTGCATCACTTG
AAGCCGATCGCTTCAGCCAGGCCTCAGCAAGAAACTCCTTGGAATCGTGT
CAAAATAGTTGAAAACTCTTTTCACTGCGAGGGTCATCGCTACATTGTCG
TCAATGTTGGCGTAAGTGGAGAAAAAGGTACGCTTGTCGACTCGTATCGA
GTGCCGGGTATGTTTGTGCAAATGCGAGCTTCCGCGGATGATAAGCCTGC
CTTCTTTGCTATGTCATGTGCACCAAACCTAGAAGGATATTTCGAGTTTC
TCATCAAGGAATCTGAGCAGTCGGAACGCATTTGCAAATTGAAGGAAGGG
AGCATGGTGGAAATGACTCCAGTCATGGGAAACGGGTTTCCCATGTCTAA
ACTAAAGATGGCTGACTACGACGAAGATGTGAAACCGAGAGATATACTAC
TATTCGCAACGGGAACGGGCATTGCACCAATTCGAGCTGCGATAGAGTCT
CCGCTGAATGGACTCAACGTTCCCTTGCGAAGATCAGTAAAACTATTCTA
CGGGGCCAGATATCCAAATAGAATGGCTTTTATGGAGAGATTCGCAATGT
GGCAAGTGGACGGTGTAGAAATTATCCCGGTTATGTCTAGACCTCAAGAC
GCGTTTGATAAGTGGGATGGGGAAACAGGCTATGTTCAGGATGTACTAAA
AAAGGTAGGCGTCGACAAGCCAAAGCAAACCGCTGCTTTACTTTGTGGGG
TGAAAGGAATGCAAGAGGATGTCACGAAGATACTCATTGAGGCTGGTGTT
CCCGCGGACCGAATTCTTCTCAACTTCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:3865177..3866106-

>Gvermi12213.t1 ID=Gvermi12213.t1|Name=Gvermi12213.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=930bp|location=Sequence derived from alignment at ScGOVlb_3404:3865177..3866106- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCATAAGGCTCAGAACGCATTTGTTGCATCCACTCCCCTCGCGCTCAG
AAAGCGTCCCTTCTCGCTATGCCGAGCTCTGCGACCACAATCGCAACCAG
CAACACACCCCTCAACCCGCCCTCAAACCACGCTTCCTTTGCATCACTTG
AAGCCGATCGCTTCAGCCAGGCCTCAGCAAGAAACTCCTTGGAATCGTGT
CAAAATAGTTGAAAACTCTTTTCACTGCGAGGGTCATCGCTACATTGTCG
TCAATGTTGGCGTAAGTGGAGAAAAAGGTACGCTTGTCGACTCGTATCGA
GTGCCGGGTATGTTTGTGCAAATGCGAGCTTCCGCGGATGATAAGCCTGC
CTTCTTTGCTATGTCATGTGCACCAAACCTAGAAGGATATTTCGAGTTTC
TCATCAAGGAATCTGAGCAGTCGGAACGCATTTGCAAATTGAAGGAAGGG
AGCATGGTGGAAATGACTCCAGTCATGGGAAACGGGTTTCCCATGTCTAA
ACTAAAGATGGCTGACTACGACGAAGATGTGAAACCGAGAGATATACTAC
TATTCGCAACGGGAACGGGCATTGCACCAATTCGAGCTGCGATAGAGTCT
CCGCTGAATGGACTCAACGTTCCCTTGCGAAGATCAGTAAAACTATTCTA
CGGGGCCAGATATCCAAATAGAATGGCTTTTATGGAGAGATTCGCAATGT
GGCAAGTGGACGGTGTAGAAATTATCCCGGTTATGTCTAGACCTCAAGAC
GCGTTTGATAAGTGGGATGGGGAAACAGGCTATGTTCAGGATGTACTAAA
AAAGGTAGGCGTCGACAAGCCAAAGCAAACCGCTGCTTTACTTTGTGGGG
TGAAAGGAATGCAAGAGGATGTCACGAAGATACTCATTGAGGCTGGTGTT
CCCGCGGACCGAATTCTTCTCAACTTCTGA
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