Gvermi12206.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12206.t1
Unique NameGvermi12206.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length550
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3846237..3847886 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1170562.Cal6303_5059
Preferred namecrtQ
PFAMsAmino_oxidase
Max annot lvl1117|Cyanobacteria
KEGG rclassRC01214,RC01959
KEGG koko:K00514
KEGG ReactionR04798,R04800,R07511,R09656,R09658
KEGG Pathwayko00906,ko01100,ko01110,map00906,map01100,map01110
KEGG ModuleM00097
Evalue2.43e-225
EggNOG OGsCOG3349@1|root,COG3349@2|Bacteria,1G09Q@1117|Cyanobacteria,1HKFZ@1161|Nostocales
EC1.3.5.6
DescriptionCatalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12206Gvermi12206Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3846237..3847886 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12206.t1.start1Gvermi12206.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3846237..3846239 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12206.t1.CDS1Gvermi12206.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3846237..3847886 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12206.t1.exon1Gvermi12206.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3846237..3847886 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12206.t1.stop1Gvermi12206.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3847884..3847886 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12206.t1Gvermi12206.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3846237..3847886 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12206.t1 ID=Gvermi12206.t1|Name=Gvermi12206.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=550bp
MRRRPAFASAAALPLRAARAPSAAQPLPPRARRAARAARAPRLSLAADVW
NVNAVPRADASGASVAVVGAGLAGLITAMELVDAGCRVSLYDTRPFAGGK
VGSWVDRRGNHIEMGLHVFFGCYYNLFDVMAKVGALKHLLLKEHTHQFIN
AGAIVGELDFRLGTVGAPFNGLKAFSATSQLGIVDKVRNALALGSSVIVR
GLLDFDGAMHQIRALDNISFSDWFISKGGTRASIQRMWDPIAYALGFISC
DNMSARCMLTIFQLFAARSEASVLRMLEGSPDKFLTAPIVKYIEQRGATV
NLRTKVRQVLYDTDDHGQTRVTGLLVADASRDELVQADYYVAACDVAGAK
RLIPEEWRQRYDLFQKMYQLDAVPVVTVQLRFDGWVTELQDDEKRMRVGS
GRAYGINNLLYSPDADFSCFADLALTSPTDYYKEGEGSLMQVVLTPGDPY
ISKSDQQIVAAVLEQLRTLFPSARQLTCTWSSVVKLVESLYREEPGKDRF
RPSQKTPVENFFLAGSYTYQDYIDSMEGAVKSGKLAATALLETIGAKAC*
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spliced messenger RNA

>Gvermi12206.t1 ID=Gvermi12206.t1|Name=Gvermi12206.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1650bp|location=Sequence derived from alignment at ScGOVlb_3404:3846237..3847886+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
atgcgccgccgccctgcgttcgcgtccgccgccgcgctcccgctacgcgc
cgcgcgcgccccgagcgccgcgcagccgctgccgccgcgcgcgcgccgcg
ccgcgcgcgccgcgcgcgcgccgcgccTGTCGCTGGCCGCCGACGTGTGG
AACGTCAACGCCGTGCCGCGCGCCGACGCCAGCGGCGCCTCCGTCGCCGT
CGTCGGCGCCGGCCTGGCCGGCCTCATCACCGCCATGGAGCTCGTCGACG
CCGGCTGCCGCGTCTCGCTGTACGACACGCGCCCGTTTGCGGGCGGCAAG
GTGGGCAGCTGGGTCGACCGCCGCGGCAACCACATCGAGATGGGCCTGCA
CGTCTTCTTCGGCTGCTACTACAACCTGTTCGACGTCATGGCCAAGGTCG
GCGCCCTCAAGCACCTGCTGCTCAAGGAGCACACGCACCAGTTCATCAAC
GCCGGTGCCATCGTGGGCGAGCTCGACTTCCGCCTGGGCACCGTGGGTGC
CCCGTTCAACGGGCTCAAGGCCTTTAGCGCCACCTCGCAGCTCGGCATTG
TCGACAAGGTGCGCAACGCCCTCGCCCTGGGCAGCTCTGTCATTGTGCGC
GGCCTGCTTGACTTTGACGGCGCCATGCACCAAATCCGAGCCTTGGACAA
CATTTCCTTCTCCGACTGGTTCATTTCCAAGGGCGGCACCCGCGCCTCCA
TCCAACGCATGTGGGACCCCATTGCGTACGCCCTGGGCTTCATCAGCTGC
GACAACATGTCCGCCAGATGCATGCTCACCATTTTCCAGCTCTTCGCCGC
CAGGTCCGAGGCCTCCGTCCTCAGGATGCTGGAAGGCAGCCCGGACAAGT
TCCTCACCGCCCCTATCGTCAAGTACATTGAGCAGCGCGGCGCCACAGTC
AACCTGCGCACCAAGGTACGCCAAGTTTTGTACGACACCGATGACCACGG
CCAAACGCGAGTGACGGGGCTGCTCGTGGCAGACGCCTCGCGCGACGAGC
TGGTGCAAGCCGATTACTACGTGGCCGCCTGCGACGTTGCCGGCGCAAAA
CGGCTCATCCCCGAAGAGTGGCGCCAGCGTTACGACCTGTTCCAAAAGAT
GTACCAATTGGACGCCGTCCCGGTCGTCACCGTGCAGCTGCGCTTTGACG
GCTGGGTCACAGAACTGCAGGACGACGAGAAGCGAATGCGCGTGGGCAGT
GGCCGCGCGTACGGAATCAACAACCTGCTCTACTCTCCAGATGCTGACTT
TTCGTGCTTTGCGGACCTGGCGCTCACGTCGCCCACTGACTACTACAAGG
AGGGCGAGGGCAGTCTCATGCAGGTGGTGCTCACGCCGGGAGACCCCTAC
ATAAGCAAGAGCGACCAGCAGATCGTGGCGGCCGTGCTAGAACAGCTCAG
GACGCTGTTCCCCAGTGCGCGCCAGCTCACGTGCACGTGGAGTTCAGTTG
TGAAGCTGGTGGAGAGTCTGTACAGAGAAGAGCCTGGTAAGGACCGCTTC
CGACCGTCGCAGAAGACGCCCGTCGAAAACTTTTTCCTGGCTGGCAGCTA
CACATATCAGGACTACATCGACTCGATGGAGGGCGCGGTGAAGAGCGGCA
AACTGGCCGCAACGGCGCTGCTCGAGACAATCGGCGCCAAGGCTTGTTGA
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protein sequence of Gvermi12206.t1

>Gvermi12206.t1 ID=Gvermi12206.t1|Name=Gvermi12206.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=550bp
MRRRPAFASAAALPLRAARAPSAAQPLPPRARRAARAARAPRLSLAADVW
NVNAVPRADASGASVAVVGAGLAGLITAMELVDAGCRVSLYDTRPFAGGK
VGSWVDRRGNHIEMGLHVFFGCYYNLFDVMAKVGALKHLLLKEHTHQFIN
AGAIVGELDFRLGTVGAPFNGLKAFSATSQLGIVDKVRNALALGSSVIVR
GLLDFDGAMHQIRALDNISFSDWFISKGGTRASIQRMWDPIAYALGFISC
DNMSARCMLTIFQLFAARSEASVLRMLEGSPDKFLTAPIVKYIEQRGATV
NLRTKVRQVLYDTDDHGQTRVTGLLVADASRDELVQADYYVAACDVAGAK
RLIPEEWRQRYDLFQKMYQLDAVPVVTVQLRFDGWVTELQDDEKRMRVGS
GRAYGINNLLYSPDADFSCFADLALTSPTDYYKEGEGSLMQVVLTPGDPY
ISKSDQQIVAAVLEQLRTLFPSARQLTCTWSSVVKLVESLYREEPGKDRF
RPSQKTPVENFFLAGSYTYQDYIDSMEGAVKSGKLAATALLETIGAKAC*
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mRNA from alignment at ScGOVlb_3404:3846237..3847886+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12206.t1 ID=Gvermi12206.t1|Name=Gvermi12206.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1650bp|location=Sequence derived from alignment at ScGOVlb_3404:3846237..3847886+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
atgcgccgccgccctgcgttcgcgtccgccgccgcgctcccgctacgcgc
cgcgcgcgccccgagcgccgcgcagccgctgccgccgcgcgcgcgccgcg
ccgcgcgcgccgcgcgcgcgccgcgccTGTCGCTGGCCGCCGACGTGTGG
AACGTCAACGCCGTGCCGCGCGCCGACGCCAGCGGCGCCTCCGTCGCCGT
CGTCGGCGCCGGCCTGGCCGGCCTCATCACCGCCATGGAGCTCGTCGACG
CCGGCTGCCGCGTCTCGCTGTACGACACGCGCCCGTTTGCGGGCGGCAAG
GTGGGCAGCTGGGTCGACCGCCGCGGCAACCACATCGAGATGGGCCTGCA
CGTCTTCTTCGGCTGCTACTACAACCTGTTCGACGTCATGGCCAAGGTCG
GCGCCCTCAAGCACCTGCTGCTCAAGGAGCACACGCACCAGTTCATCAAC
GCCGGTGCCATCGTGGGCGAGCTCGACTTCCGCCTGGGCACCGTGGGTGC
CCCGTTCAACGGGCTCAAGGCCTTTAGCGCCACCTCGCAGCTCGGCATTG
TCGACAAGGTGCGCAACGCCCTCGCCCTGGGCAGCTCTGTCATTGTGCGC
GGCCTGCTTGACTTTGACGGCGCCATGCACCAAATCCGAGCCTTGGACAA
CATTTCCTTCTCCGACTGGTTCATTTCCAAGGGCGGCACCCGCGCCTCCA
TCCAACGCATGTGGGACCCCATTGCGTACGCCCTGGGCTTCATCAGCTGC
GACAACATGTCCGCCAGATGCATGCTCACCATTTTCCAGCTCTTCGCCGC
CAGGTCCGAGGCCTCCGTCCTCAGGATGCTGGAAGGCAGCCCGGACAAGT
TCCTCACCGCCCCTATCGTCAAGTACATTGAGCAGCGCGGCGCCACAGTC
AACCTGCGCACCAAGGTACGCCAAGTTTTGTACGACACCGATGACCACGG
CCAAACGCGAGTGACGGGGCTGCTCGTGGCAGACGCCTCGCGCGACGAGC
TGGTGCAAGCCGATTACTACGTGGCCGCCTGCGACGTTGCCGGCGCAAAA
CGGCTCATCCCCGAAGAGTGGCGCCAGCGTTACGACCTGTTCCAAAAGAT
GTACCAATTGGACGCCGTCCCGGTCGTCACCGTGCAGCTGCGCTTTGACG
GCTGGGTCACAGAACTGCAGGACGACGAGAAGCGAATGCGCGTGGGCAGT
GGCCGCGCGTACGGAATCAACAACCTGCTCTACTCTCCAGATGCTGACTT
TTCGTGCTTTGCGGACCTGGCGCTCACGTCGCCCACTGACTACTACAAGG
AGGGCGAGGGCAGTCTCATGCAGGTGGTGCTCACGCCGGGAGACCCCTAC
ATAAGCAAGAGCGACCAGCAGATCGTGGCGGCCGTGCTAGAACAGCTCAG
GACGCTGTTCCCCAGTGCGCGCCAGCTCACGTGCACGTGGAGTTCAGTTG
TGAAGCTGGTGGAGAGTCTGTACAGAGAAGAGCCTGGTAAGGACCGCTTC
CGACCGTCGCAGAAGACGCCCGTCGAAAACTTTTTCCTGGCTGGCAGCTA
CACATATCAGGACTACATCGACTCGATGGAGGGCGCGGTGAAGAGCGGCA
AACTGGCCGCAACGGCGCTGCTCGAGACAATCGGCGCCAAGGCTTGTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:3846237..3847886+

>Gvermi12206.t1 ID=Gvermi12206.t1|Name=Gvermi12206.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1650bp|location=Sequence derived from alignment at ScGOVlb_3404:3846237..3847886+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
atgcgccgccgccctgcgttcgcgtccgccgccgcgctcccgctacgcgc
cgcgcgcgccccgagcgccgcgcagccgctgccgccgcgcgcgcgccgcg
ccgcgcgcgccgcgcgcgcgccgcgccTGTCGCTGGCCGCCGACGTGTGG
AACGTCAACGCCGTGCCGCGCGCCGACGCCAGCGGCGCCTCCGTCGCCGT
CGTCGGCGCCGGCCTGGCCGGCCTCATCACCGCCATGGAGCTCGTCGACG
CCGGCTGCCGCGTCTCGCTGTACGACACGCGCCCGTTTGCGGGCGGCAAG
GTGGGCAGCTGGGTCGACCGCCGCGGCAACCACATCGAGATGGGCCTGCA
CGTCTTCTTCGGCTGCTACTACAACCTGTTCGACGTCATGGCCAAGGTCG
GCGCCCTCAAGCACCTGCTGCTCAAGGAGCACACGCACCAGTTCATCAAC
GCCGGTGCCATCGTGGGCGAGCTCGACTTCCGCCTGGGCACCGTGGGTGC
CCCGTTCAACGGGCTCAAGGCCTTTAGCGCCACCTCGCAGCTCGGCATTG
TCGACAAGGTGCGCAACGCCCTCGCCCTGGGCAGCTCTGTCATTGTGCGC
GGCCTGCTTGACTTTGACGGCGCCATGCACCAAATCCGAGCCTTGGACAA
CATTTCCTTCTCCGACTGGTTCATTTCCAAGGGCGGCACCCGCGCCTCCA
TCCAACGCATGTGGGACCCCATTGCGTACGCCCTGGGCTTCATCAGCTGC
GACAACATGTCCGCCAGATGCATGCTCACCATTTTCCAGCTCTTCGCCGC
CAGGTCCGAGGCCTCCGTCCTCAGGATGCTGGAAGGCAGCCCGGACAAGT
TCCTCACCGCCCCTATCGTCAAGTACATTGAGCAGCGCGGCGCCACAGTC
AACCTGCGCACCAAGGTACGCCAAGTTTTGTACGACACCGATGACCACGG
CCAAACGCGAGTGACGGGGCTGCTCGTGGCAGACGCCTCGCGCGACGAGC
TGGTGCAAGCCGATTACTACGTGGCCGCCTGCGACGTTGCCGGCGCAAAA
CGGCTCATCCCCGAAGAGTGGCGCCAGCGTTACGACCTGTTCCAAAAGAT
GTACCAATTGGACGCCGTCCCGGTCGTCACCGTGCAGCTGCGCTTTGACG
GCTGGGTCACAGAACTGCAGGACGACGAGAAGCGAATGCGCGTGGGCAGT
GGCCGCGCGTACGGAATCAACAACCTGCTCTACTCTCCAGATGCTGACTT
TTCGTGCTTTGCGGACCTGGCGCTCACGTCGCCCACTGACTACTACAAGG
AGGGCGAGGGCAGTCTCATGCAGGTGGTGCTCACGCCGGGAGACCCCTAC
ATAAGCAAGAGCGACCAGCAGATCGTGGCGGCCGTGCTAGAACAGCTCAG
GACGCTGTTCCCCAGTGCGCGCCAGCTCACGTGCACGTGGAGTTCAGTTG
TGAAGCTGGTGGAGAGTCTGTACAGAGAAGAGCCTGGTAAGGACCGCTTC
CGACCGTCGCAGAAGACGCCCGTCGAAAACTTTTTCCTGGCTGGCAGCTA
CACATATCAGGACTACATCGACTCGATGGAGGGCGCGGTGAAGAGCGGCA
AACTGGCCGCAACGGCGCTGCTCGAGACAATCGGCGCCAAGGCTTGTTGA
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