Gvermi12204.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12204.t1
Unique NameGvermi12204.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length453
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3841153..3842511 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog35128.Thaps31394
PFAMsAminotran_1_2
Max annot lvl2836|Bacillariophyta
KEGG rclassRC00006,RC01847
KEGG koko:K10206
KEGG ReactionR07613
KEGG Pathwayko00300,ko01100,ko01110,ko01130,ko01230,map00300,map01100,map01110,map01130,map01230
KEGG ModuleM00527
Evalue3.23e-200
EggNOG OGsCOG0436@1|root,KOG0257@2759|Eukaryota,2XBP7@2836|Bacillariophyta
EC2.6.1.83
DescriptionAminotransferase class I and II
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000,ko01007
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12204Gvermi12204Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3841153..3842511 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12204.t1.stop1Gvermi12204.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3841153..3841155 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12204.t1.CDS1Gvermi12204.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3841153..3842511 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12204.t1.exon1Gvermi12204.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3841153..3842511 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12204.t1.start1Gvermi12204.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3842509..3842511 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12204.t1Gvermi12204.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3841153..3842511 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12204.t1 ID=Gvermi12204.t1|Name=Gvermi12204.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=453bp
MAFVTLTSSFFAAPVRPRAARVAPPPRAPRARPPPPRALPPAASAVQRNR
NFSKLQAGYLFPEIGRRTKAYLARNPHATVISLGVGDTTMPIPAHICGAL
TDAASKLGTADGYSGYGAEQGMPQLRHSISSVLYRGTVAPEEVFVSDGAK
CDISRLQQVFGPNATVAVQDPSYPVYVDTAVMQGQTAHFDRATSQFDAIV
YMRCDASNAFFPDLAAVPRTDLIFFCSPNNPTGAAATREQLTQLVQFATK
NGSIIIFDAAYAPFINDPNVPTSIFEIDGARQVAIEVNSFSKYAGFTGVR
LGWVVVPNELTFADGSPVRADFNRVMTTCFNGASNISQHGGLACLDEQGR
SEIQQLIDYYLANAAMLRTTMTELGFDVYGGTDAPYIWVRFPGKNSWDVF
SQILEEAQVVTIPGAGFGPGGEGYLRLSAFAPRHACEEACKRLRAMYASV
AA*
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spliced messenger RNA

>Gvermi12204.t1 ID=Gvermi12204.t1|Name=Gvermi12204.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1359bp|location=Sequence derived from alignment at ScGOVlb_3404:3841153..3842511- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTTCGTCACCCTCACCTCCTCCTTTTTCGCCGCCCCAGTGCGCCC
GCGCGCCGCGCGCGTCGCCCCGCCGCCGCGCGCGCCGCGCGCGCGCCCGC
CGCCGCCCCGCGCGCTCCCCCCCGCCGCCTCCGCCGTGCAGCGCAACCGC
AACTTCTCCAAGCTGCAGGCCGGCTACTTGTTCCCGGAGATCGGCCGCCG
CACAAAGGCCTACCTCGCCCGCAACCCGCATGCCACCGTCATTTCGCTCG
GTGTGGGCGACACCACCATGCCCATTCCCGCCCACATCTGCGGCGCCCTC
ACCGACGCCGCCTCCAAGCTGGGCACCGCCGACGGCTACTCCGGCTACGG
CGCCGAGCAGGGCATGCCCCAGCTGCGCCACAGCATCTCCTCCGTCCTGT
ACCGCGGCACCGTGGCCCCCGAGGAAGTGTTCGTTTCCGACGGTGCCAAA
TGCGACATCTCACGACTGCAGCAGGTCTTTGGACCCAACGCCACCGTAGC
CGTCCAGGATCCGAGCTACCCGGTGTACGTTGACACCGCCGTCATGCAGG
GCCAGACCGCGCACTTTGACCGCGCCACCTCGCAGTTTGACGCCATTGTG
TACATGCGCTGCGACGCCTCCAACGCCTTCTTCCCCGATCTCGCCGCCGT
TCCGCGCACCGATCTCATCTTCTTTTGCAGCCCCAACAACCCCACCGGCG
CCGCCGCCACCCGCGAGCAACTCACCCAGCTCGTGCAGTTTGCCACCAAA
AACGGCAGCATCATCATTTTCGACGCTGCCTACGCCCCGTTCATCAACGA
CCCCAACGTGCCCACGAGCATTTTTGAAATCGACGGCGCTCGCCAGGTGG
CCATCGAGGTCAATTCCTTCTCAAAGTATGCGGGCTTCACGGGTGTGCGT
CTGGGCTGGGTTGTCGTCCCCAACGAGCTCACCTTTGCCGATGGCAGTCC
TGTGCGCGCTGACTTCAATCGCGTCATGACCACGTGCTTCAACGGCGCCA
GCAACATCTCTCAGCACGGAGGGCTCGCGTGCTTGGACGAGCAAGGCAGG
AGCGAGATCCAGCAACTCATCGACTACTACCTGGCCAACGCCGCAATGCT
ACGAACTACCATGACCGAGCTCGGCTTCGACGTCTACGGCGGCACAGATG
CCCCCTACATTTGGGTTCGATTCCCGGGAAAGAACAGCTGGGATGTTTTC
AGCCAAATCTTGGAAGAGGCGCAGGTGGTCACCATTCCGGGCGCGGGCTT
TGGGCCCGGGGGCGAGGGATATCTTCGCCTCAGCGCTTTCGCTCCGCGAC
ACGCCTGTGAGGAAGCATGCAAGCGACTCCGCGCCATGTACGCCAGCGTG
GCAGCGTAG
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protein sequence of Gvermi12204.t1

>Gvermi12204.t1 ID=Gvermi12204.t1|Name=Gvermi12204.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=453bp
MAFVTLTSSFFAAPVRPRAARVAPPPRAPRARPPPPRALPPAASAVQRNR
NFSKLQAGYLFPEIGRRTKAYLARNPHATVISLGVGDTTMPIPAHICGAL
TDAASKLGTADGYSGYGAEQGMPQLRHSISSVLYRGTVAPEEVFVSDGAK
CDISRLQQVFGPNATVAVQDPSYPVYVDTAVMQGQTAHFDRATSQFDAIV
YMRCDASNAFFPDLAAVPRTDLIFFCSPNNPTGAAATREQLTQLVQFATK
NGSIIIFDAAYAPFINDPNVPTSIFEIDGARQVAIEVNSFSKYAGFTGVR
LGWVVVPNELTFADGSPVRADFNRVMTTCFNGASNISQHGGLACLDEQGR
SEIQQLIDYYLANAAMLRTTMTELGFDVYGGTDAPYIWVRFPGKNSWDVF
SQILEEAQVVTIPGAGFGPGGEGYLRLSAFAPRHACEEACKRLRAMYASV
AA*
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mRNA from alignment at ScGOVlb_3404:3841153..3842511-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12204.t1 ID=Gvermi12204.t1|Name=Gvermi12204.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1359bp|location=Sequence derived from alignment at ScGOVlb_3404:3841153..3842511- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCTTCGTCACCCTCACCTCCTCCTTTTTCGCCGCCCCAGTGCGCCC
GCGCGCCGCGCGCGTCGCCCCGCCGCCGCGCGCGCCGCGCGCGCGCCCGC
CGCCGCCCCGCGCGCTCCCCCCCGCCGCCTCCGCCGTGCAGCGCAACCGC
AACTTCTCCAAGCTGCAGGCCGGCTACTTGTTCCCGGAGATCGGCCGCCG
CACAAAGGCCTACCTCGCCCGCAACCCGCATGCCACCGTCATTTCGCTCG
GTGTGGGCGACACCACCATGCCCATTCCCGCCCACATCTGCGGCGCCCTC
ACCGACGCCGCCTCCAAGCTGGGCACCGCCGACGGCTACTCCGGCTACGG
CGCCGAGCAGGGCATGCCCCAGCTGCGCCACAGCATCTCCTCCGTCCTGT
ACCGCGGCACCGTGGCCCCCGAGGAAGTGTTCGTTTCCGACGGTGCCAAA
TGCGACATCTCACGACTGCAGCAGGTCTTTGGACCCAACGCCACCGTAGC
CGTCCAGGATCCGAGCTACCCGGTGTACGTTGACACCGCCGTCATGCAGG
GCCAGACCGCGCACTTTGACCGCGCCACCTCGCAGTTTGACGCCATTGTG
TACATGCGCTGCGACGCCTCCAACGCCTTCTTCCCCGATCTCGCCGCCGT
TCCGCGCACCGATCTCATCTTCTTTTGCAGCCCCAACAACCCCACCGGCG
CCGCCGCCACCCGCGAGCAACTCACCCAGCTCGTGCAGTTTGCCACCAAA
AACGGCAGCATCATCATTTTCGACGCTGCCTACGCCCCGTTCATCAACGA
CCCCAACGTGCCCACGAGCATTTTTGAAATCGACGGCGCTCGCCAGGTGG
CCATCGAGGTCAATTCCTTCTCAAAGTATGCGGGCTTCACGGGTGTGCGT
CTGGGCTGGGTTGTCGTCCCCAACGAGCTCACCTTTGCCGATGGCAGTCC
TGTGCGCGCTGACTTCAATCGCGTCATGACCACGTGCTTCAACGGCGCCA
GCAACATCTCTCAGCACGGAGGGCTCGCGTGCTTGGACGAGCAAGGCAGG
AGCGAGATCCAGCAACTCATCGACTACTACCTGGCCAACGCCGCAATGCT
ACGAACTACCATGACCGAGCTCGGCTTCGACGTCTACGGCGGCACAGATG
CCCCCTACATTTGGGTTCGATTCCCGGGAAAGAACAGCTGGGATGTTTTC
AGCCAAATCTTGGAAGAGGCGCAGGTGGTCACCATTCCGGGCGCGGGCTT
TGGGCCCGGGGGCGAGGGATATCTTCGCCTCAGCGCTTTCGCTCCGCGAC
ACGCCTGTGAGGAAGCATGCAAGCGACTCCGCGCCATGTACGCCAGCGTG
GCAGCGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:3841153..3842511-

>Gvermi12204.t1 ID=Gvermi12204.t1|Name=Gvermi12204.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1359bp|location=Sequence derived from alignment at ScGOVlb_3404:3841153..3842511- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCTTCGTCACCCTCACCTCCTCCTTTTTCGCCGCCCCAGTGCGCCC
GCGCGCCGCGCGCGTCGCCCCGCCGCCGCGCGCGCCGCGCGCGCGCCCGC
CGCCGCCCCGCGCGCTCCCCCCCGCCGCCTCCGCCGTGCAGCGCAACCGC
AACTTCTCCAAGCTGCAGGCCGGCTACTTGTTCCCGGAGATCGGCCGCCG
CACAAAGGCCTACCTCGCCCGCAACCCGCATGCCACCGTCATTTCGCTCG
GTGTGGGCGACACCACCATGCCCATTCCCGCCCACATCTGCGGCGCCCTC
ACCGACGCCGCCTCCAAGCTGGGCACCGCCGACGGCTACTCCGGCTACGG
CGCCGAGCAGGGCATGCCCCAGCTGCGCCACAGCATCTCCTCCGTCCTGT
ACCGCGGCACCGTGGCCCCCGAGGAAGTGTTCGTTTCCGACGGTGCCAAA
TGCGACATCTCACGACTGCAGCAGGTCTTTGGACCCAACGCCACCGTAGC
CGTCCAGGATCCGAGCTACCCGGTGTACGTTGACACCGCCGTCATGCAGG
GCCAGACCGCGCACTTTGACCGCGCCACCTCGCAGTTTGACGCCATTGTG
TACATGCGCTGCGACGCCTCCAACGCCTTCTTCCCCGATCTCGCCGCCGT
TCCGCGCACCGATCTCATCTTCTTTTGCAGCCCCAACAACCCCACCGGCG
CCGCCGCCACCCGCGAGCAACTCACCCAGCTCGTGCAGTTTGCCACCAAA
AACGGCAGCATCATCATTTTCGACGCTGCCTACGCCCCGTTCATCAACGA
CCCCAACGTGCCCACGAGCATTTTTGAAATCGACGGCGCTCGCCAGGTGG
CCATCGAGGTCAATTCCTTCTCAAAGTATGCGGGCTTCACGGGTGTGCGT
CTGGGCTGGGTTGTCGTCCCCAACGAGCTCACCTTTGCCGATGGCAGTCC
TGTGCGCGCTGACTTCAATCGCGTCATGACCACGTGCTTCAACGGCGCCA
GCAACATCTCTCAGCACGGAGGGCTCGCGTGCTTGGACGAGCAAGGCAGG
AGCGAGATCCAGCAACTCATCGACTACTACCTGGCCAACGCCGCAATGCT
ACGAACTACCATGACCGAGCTCGGCTTCGACGTCTACGGCGGCACAGATG
CCCCCTACATTTGGGTTCGATTCCCGGGAAAGAACAGCTGGGATGTTTTC
AGCCAAATCTTGGAAGAGGCGCAGGTGGTCACCATTCCGGGCGCGGGCTT
TGGGCCCGGGGGCGAGGGATATCTTCGCCTCAGCGCTTTCGCTCCGCGAC
ACGCCTGTGAGGAAGCATGCAAGCGACTCCGCGCCATGTACGCCAGCGTG
GCAGCGTAG
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