Gvermi12193.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12193.t1
Unique Name	Gvermi12193.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	637

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:3801306..3803216 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703843.1
Preferred name	SLC9A8
PFAMs	Na_H_Exchanger
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K14724
KEGG TC	2.A.36.1.12,2.A.36.1.9
GOs	GO:0000139,GO:0001667,GO:0003365,GO:0003674,GO:0005215,GO:0005451,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0006814,GO:0006873,GO:0006885,GO:0006928,GO:0006935,GO:0006996,GO:0007010,GO:0007015,GO:0007163,GO:0008064,GO:0008104,GO:0008150,GO:0008154,GO:0008324,GO:0009605,GO:0009987,GO:0010035,GO:0010038,GO:0010638,GO:0012505,GO:0015075,GO:0015077,GO:0015078,GO:0015079,GO:0015081,GO:0015291,GO:0015297,GO:0015298,GO:0015299,GO:0015318,GO:0015385,GO:0015386,GO:0015491,GO:0015672,GO:0016020,GO:0016043,GO:0016477,GO:0019725,GO:0022607,GO:0022804,GO:0022821,GO:0022857,GO:0022890,GO:0030001,GO:0030003,GO:0030004,GO:0030010,GO:0030029,GO:0030036,GO:0030041,GO:0030641,GO:0030832,GO:0030833,GO:0030838,GO:0031090,GO:0031252,GO:0031256,GO:0031334,GO:0031984,GO:0032101,GO:0032271,GO:0032273,GO:0032535,GO:0032956,GO:0032970,GO:0033036,GO:0033043,GO:0034220,GO:0034613,GO:0034622,GO:0035725,GO:0035864,GO:0035865,GO:0036051,GO:0040011,GO:0040012,GO:0042221,GO:0042330,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043254,GO:0043327,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0046873,GO:0048518,GO:0048522,GO:0048583,GO:0048870,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0050920,GO:0050926,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051258,GO:0051453,GO:0051493,GO:0051495,GO:0051592,GO:0051641,GO:0051674,GO:0051716,GO:0055067,GO:0055080,GO:0055082,GO:0055085,GO:0061118,GO:0061572,GO:0065003,GO:0065007,GO:0065008,GO:0070650,GO:0070727,GO:0070887,GO:0071241,GO:0071248,GO:0071804,GO:0071805,GO:0071840,GO:0071944,GO:0090066,GO:0097230,GO:0097435,GO:0098588,GO:0098655,GO:0098657,GO:0098659,GO:0098660,GO:0098662,GO:0098719,GO:0098739,GO:0098771,GO:0098791,GO:0099516,GO:0099587,GO:0110053,GO:1902600,GO:1902903,GO:1902905
Evalue	3.31e-180
EggNOG OGs	COG0025@1\|root,KOG1965@2759\|Eukaryota
Description	potassium:proton antiporter activity
COG category	P
BRITE	ko00000,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12193	Gvermi12193	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 3801306..3803216 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12193.t1.start1	Gvermi12193.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 3801306..3801308 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12193.t1.CDS1	Gvermi12193.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 3801306..3803216 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12193.t1.exon1	Gvermi12193.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 3801306..3803216 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12193.t1.stop1	Gvermi12193.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 3803214..3803216 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12193.t1	Gvermi12193.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 3801306..3803216 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:3801306..3803216+
coding sequence from alignment at ScGOVlb_3404:3801306..3803216+

mRNA sequence

>Gvermi12193.t1 ID=Gvermi12193.t1|Name=Gvermi12193.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=637bp
MSTETPEASRPSDPNSTNQNFPSLSEFLHQATLSESQSRRKAWLYFGGTI
IAFAIIVTMWSTSSASHRAMQCPDCNCGADGGAPPVSYEGAEAALGVGLS
IFTIQLTLCIFAAYILVQNRLIFLPSCIAYVLLGILVGSIVRVSGAANAL
GFSLPNQEQFFTFILPPIILEAGYSLNKADFYAEGLGILLLAVPGTLISA
LAFGIGMYVAGILGISYFFSFWEAMTFGALLSAVDPVATIAIFSALKVNK
TLHFLVFGESVLNDAVAIVLYRTFSRLIGYAVTSWYGPLFKFVYIFFGSL
MVGALLAAITALVLKHINLYRNPSLEFSFYLLMAYLPYPFCDGIGMSGIL
GILTSSVVLAHYAHYNLSKITQISSQQVFRSLAFLAETFVFIYLGTALTT
FNHSWHIATIVWGIIFTLVSRAANIYPLTHLLNKYRSDKISKKTQLIMWF
SGSLRGAIAWALSLSLPSRNGSDDTRRVVISSTLAIVLFTVIVLGGGMLP
LLRLVRIEDEANEVQNNDSQDSREGSEELPNGTTFQESPSLASLFAQRLS
RLDETWLRPTLVASSTRSMIATNRTLQTLAVSAVERLTPHQLGSLLDSSA
APDLSSVGEPLAECNREEEDVELAVVSVNKDQLTFE*

spliced messenger RNA

>Gvermi12193.t1 ID=Gvermi12193.t1|Name=Gvermi12193.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1911bp|location=Sequence derived from alignment at ScGOVlb_3404:3801306..3803216+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCACAGAAACCCCTGAGGCGAGCAGGCCAAGCGACCCAAACTCTAC
AAATCAGAATTTTCCTTCTCTTTCTGAGTTTCTGCATCAGGCCACACTTT
CGGAATCTCAATCTCGTCGAAAAGCATGGCTCTACTTTGGCGGCACCATC
ATAGCGTTTGCTATTATTGTCACAATGTGGTCCACAAGCTCTGCTTCCCA
CAGAGCTATGCAATGCCCAGATTGTAATTGTGGAGCAGACGGGGGCGCAC
CACCAGTTTCTTACGAGGGTGCGGAAGCCGCGCTTGGAGTTGGTTTGTCT
ATCTTCACTATACAGTTGACATTGTGTATATTTGCTGCTTACATTCTTGT
GCAGAATCGCCTCATATTTTTACCGTCTTGCATTGCGTATGTGCTCCTTG
GCATCTTGGTTGGCAGTATAGTGCGAGTTAGTGGTGCAGCAAATGCACTT
GGATTCAGCCTACCGAATCAAGAGCAGTTTTTCACTTTCATTCTTCCACC
GATCATTCTCGAAGCTGGGTACTCTTTGAACAAGGCTGACTTTTATGCTG
AAGGCCTTGGTATTCTTTTACTGGCAGTTCCGGGAACTTTAATATCTGCA
TTAGCTTTTGGAATAGGAATGTATGTTGCTGGAATATTAGGAATAAGTTA
CTTTTTTTCTTTCTGGGAAGCTATGACATTCGGGGCACTGCTCTCGGCTG
TTGATCCCGTTGCTACCATTGCAATATTCTCTGCTCTGAAAGTTAACAAG
ACACTCCACTTTCTTGTTTTTGGTGAATCAGTTCTCAACGATGCAGTAGC
TATTGTCTTATATCGCACGTTCTCCCGATTAATTGGTTACGCAGTCACGA
GTTGGTACGGTCCATTGTTCAAATTTGTCTACATTTTCTTCGGTTCTTTG
ATGGTGGGAGCCTTGTTGGCAGCGATCACAGCGCTCGTGCTCAAACATAT
TAATCTCTATCGGAATCCGTCGTTGGAATTTTCGTTTTATCTTCTTATGG
CATATCTTCCGTACCCTTTTTGTGACGGGATTGGCATGAGTGGCATCTTA
GGAATTCTGACGAGCTCCGTCGTCTTGGCCCATTACGCTCATTACAATCT
ATCCAAAATCACACAAATATCCTCACAGCAAGTTTTCCGATCACTCGCAT
TTCTTGCCGAAACCTTCGTGTTTATTTACCTGGGAACGGCATTGACCACG
TTCAATCATTCTTGGCATATAGCTACAATCGTGTGGGGTATCATATTCAC
TCTAGTATCTCGCGCAGCGAATATCTATCCTCTGACGCACTTATTGAACA
AGTATCGGAGTGACAAGATATCAAAGAAGACTCAACTGATTATGTGGTTT
AGTGGCTCCTTGCGTGGCGCAATTGCCTGGGCACTTTCCCTGAGTCTGCC
CAGCCGCAACGGCTCAGATGACACTCGAAGGGTGGTCATTTCTTCAACAT
TAGCAATAGTTCTTTTCACAGTAATTGTGTTGGGTGGAGGCATGCTTCCT
TTACTGAGATTGGTCCGAATCGAAGATGAAGCCAATGAAGTGCAAAATAA
TGACAGCCAGGACAGCAGAGAGGGCTCTGAAGAACTACCAAATGGAACCA
CATTTCAGGAATCCCCATCTCTCGCGAGTTTGTTTGCCCAACGGTTGAGC
CGATTAGATGAAACTTGGCTCAGACCAACGCTCGTTGCATCATCGACTCG
AAGCATGATCGCGACCAACAGAACTCTGCAGACCCTGGCCGTTTCAGCAG
TTGAGCGTCTTACACCACATCAACTTGGTTCGTTGCTTGATTCATCGGCA
GCACCGGATTTATCATCCGTAGGCGAGCCACTGGCTGAGTGCAACCGAGA
AGAAGAGGATGTAGAACTCGCCGTTGTAAGCGTGAACAAAGACCAGCTTA
CTTTTGAATGA

protein sequence of Gvermi12193.t1

>Gvermi12193.t1 ID=Gvermi12193.t1|Name=Gvermi12193.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=637bp
MSTETPEASRPSDPNSTNQNFPSLSEFLHQATLSESQSRRKAWLYFGGTI
IAFAIIVTMWSTSSASHRAMQCPDCNCGADGGAPPVSYEGAEAALGVGLS
IFTIQLTLCIFAAYILVQNRLIFLPSCIAYVLLGILVGSIVRVSGAANAL
GFSLPNQEQFFTFILPPIILEAGYSLNKADFYAEGLGILLLAVPGTLISA
LAFGIGMYVAGILGISYFFSFWEAMTFGALLSAVDPVATIAIFSALKVNK
TLHFLVFGESVLNDAVAIVLYRTFSRLIGYAVTSWYGPLFKFVYIFFGSL
MVGALLAAITALVLKHINLYRNPSLEFSFYLLMAYLPYPFCDGIGMSGIL
GILTSSVVLAHYAHYNLSKITQISSQQVFRSLAFLAETFVFIYLGTALTT
FNHSWHIATIVWGIIFTLVSRAANIYPLTHLLNKYRSDKISKKTQLIMWF
SGSLRGAIAWALSLSLPSRNGSDDTRRVVISSTLAIVLFTVIVLGGGMLP
LLRLVRIEDEANEVQNNDSQDSREGSEELPNGTTFQESPSLASLFAQRLS
RLDETWLRPTLVASSTRSMIATNRTLQTLAVSAVERLTPHQLGSLLDSSA
APDLSSVGEPLAECNREEEDVELAVVSVNKDQLTFE*

mRNA from alignment at ScGOVlb_3404:3801306..3803216+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12193.t1 ID=Gvermi12193.t1|Name=Gvermi12193.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1911bp|location=Sequence derived from alignment at ScGOVlb_3404:3801306..3803216+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCCACAGAAACCCCTGAGGCGAGCAGGCCAAGCGACCCAAACTCTAC
AAATCAGAATTTTCCTTCTCTTTCTGAGTTTCTGCATCAGGCCACACTTT
CGGAATCTCAATCTCGTCGAAAAGCATGGCTCTACTTTGGCGGCACCATC
ATAGCGTTTGCTATTATTGTCACAATGTGGTCCACAAGCTCTGCTTCCCA
CAGAGCTATGCAATGCCCAGATTGTAATTGTGGAGCAGACGGGGGCGCAC
CACCAGTTTCTTACGAGGGTGCGGAAGCCGCGCTTGGAGTTGGTTTGTCT
ATCTTCACTATACAGTTGACATTGTGTATATTTGCTGCTTACATTCTTGT
GCAGAATCGCCTCATATTTTTACCGTCTTGCATTGCGTATGTGCTCCTTG
GCATCTTGGTTGGCAGTATAGTGCGAGTTAGTGGTGCAGCAAATGCACTT
GGATTCAGCCTACCGAATCAAGAGCAGTTTTTCACTTTCATTCTTCCACC
GATCATTCTCGAAGCTGGGTACTCTTTGAACAAGGCTGACTTTTATGCTG
AAGGCCTTGGTATTCTTTTACTGGCAGTTCCGGGAACTTTAATATCTGCA
TTAGCTTTTGGAATAGGAATGTATGTTGCTGGAATATTAGGAATAAGTTA
CTTTTTTTCTTTCTGGGAAGCTATGACATTCGGGGCACTGCTCTCGGCTG
TTGATCCCGTTGCTACCATTGCAATATTCTCTGCTCTGAAAGTTAACAAG
ACACTCCACTTTCTTGTTTTTGGTGAATCAGTTCTCAACGATGCAGTAGC
TATTGTCTTATATCGCACGTTCTCCCGATTAATTGGTTACGCAGTCACGA
GTTGGTACGGTCCATTGTTCAAATTTGTCTACATTTTCTTCGGTTCTTTG
ATGGTGGGAGCCTTGTTGGCAGCGATCACAGCGCTCGTGCTCAAACATAT
TAATCTCTATCGGAATCCGTCGTTGGAATTTTCGTTTTATCTTCTTATGG
CATATCTTCCGTACCCTTTTTGTGACGGGATTGGCATGAGTGGCATCTTA
GGAATTCTGACGAGCTCCGTCGTCTTGGCCCATTACGCTCATTACAATCT
ATCCAAAATCACACAAATATCCTCACAGCAAGTTTTCCGATCACTCGCAT
TTCTTGCCGAAACCTTCGTGTTTATTTACCTGGGAACGGCATTGACCACG
TTCAATCATTCTTGGCATATAGCTACAATCGTGTGGGGTATCATATTCAC
TCTAGTATCTCGCGCAGCGAATATCTATCCTCTGACGCACTTATTGAACA
AGTATCGGAGTGACAAGATATCAAAGAAGACTCAACTGATTATGTGGTTT
AGTGGCTCCTTGCGTGGCGCAATTGCCTGGGCACTTTCCCTGAGTCTGCC
CAGCCGCAACGGCTCAGATGACACTCGAAGGGTGGTCATTTCTTCAACAT
TAGCAATAGTTCTTTTCACAGTAATTGTGTTGGGTGGAGGCATGCTTCCT
TTACTGAGATTGGTCCGAATCGAAGATGAAGCCAATGAAGTGCAAAATAA
TGACAGCCAGGACAGCAGAGAGGGCTCTGAAGAACTACCAAATGGAACCA
CATTTCAGGAATCCCCATCTCTCGCGAGTTTGTTTGCCCAACGGTTGAGC
CGATTAGATGAAACTTGGCTCAGACCAACGCTCGTTGCATCATCGACTCG
AAGCATGATCGCGACCAACAGAACTCTGCAGACCCTGGCCGTTTCAGCAG
TTGAGCGTCTTACACCACATCAACTTGGTTCGTTGCTTGATTCATCGGCA
GCACCGGATTTATCATCCGTAGGCGAGCCACTGGCTGAGTGCAACCGAGA
AGAAGAGGATGTAGAACTCGCCGTTGTAAGCGTGAACAAAGACCAGCTTA
CTTTTGAATGA

Coding sequence (CDS) from alignment at ScGOVlb_3404:3801306..3803216+

>Gvermi12193.t1 ID=Gvermi12193.t1|Name=Gvermi12193.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1911bp|location=Sequence derived from alignment at ScGOVlb_3404:3801306..3803216+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCCACAGAAACCCCTGAGGCGAGCAGGCCAAGCGACCCAAACTCTAC
AAATCAGAATTTTCCTTCTCTTTCTGAGTTTCTGCATCAGGCCACACTTT
CGGAATCTCAATCTCGTCGAAAAGCATGGCTCTACTTTGGCGGCACCATC
ATAGCGTTTGCTATTATTGTCACAATGTGGTCCACAAGCTCTGCTTCCCA
CAGAGCTATGCAATGCCCAGATTGTAATTGTGGAGCAGACGGGGGCGCAC
CACCAGTTTCTTACGAGGGTGCGGAAGCCGCGCTTGGAGTTGGTTTGTCT
ATCTTCACTATACAGTTGACATTGTGTATATTTGCTGCTTACATTCTTGT
GCAGAATCGCCTCATATTTTTACCGTCTTGCATTGCGTATGTGCTCCTTG
GCATCTTGGTTGGCAGTATAGTGCGAGTTAGTGGTGCAGCAAATGCACTT
GGATTCAGCCTACCGAATCAAGAGCAGTTTTTCACTTTCATTCTTCCACC
GATCATTCTCGAAGCTGGGTACTCTTTGAACAAGGCTGACTTTTATGCTG
AAGGCCTTGGTATTCTTTTACTGGCAGTTCCGGGAACTTTAATATCTGCA
TTAGCTTTTGGAATAGGAATGTATGTTGCTGGAATATTAGGAATAAGTTA
CTTTTTTTCTTTCTGGGAAGCTATGACATTCGGGGCACTGCTCTCGGCTG
TTGATCCCGTTGCTACCATTGCAATATTCTCTGCTCTGAAAGTTAACAAG
ACACTCCACTTTCTTGTTTTTGGTGAATCAGTTCTCAACGATGCAGTAGC
TATTGTCTTATATCGCACGTTCTCCCGATTAATTGGTTACGCAGTCACGA
GTTGGTACGGTCCATTGTTCAAATTTGTCTACATTTTCTTCGGTTCTTTG
ATGGTGGGAGCCTTGTTGGCAGCGATCACAGCGCTCGTGCTCAAACATAT
TAATCTCTATCGGAATCCGTCGTTGGAATTTTCGTTTTATCTTCTTATGG
CATATCTTCCGTACCCTTTTTGTGACGGGATTGGCATGAGTGGCATCTTA
GGAATTCTGACGAGCTCCGTCGTCTTGGCCCATTACGCTCATTACAATCT
ATCCAAAATCACACAAATATCCTCACAGCAAGTTTTCCGATCACTCGCAT
TTCTTGCCGAAACCTTCGTGTTTATTTACCTGGGAACGGCATTGACCACG
TTCAATCATTCTTGGCATATAGCTACAATCGTGTGGGGTATCATATTCAC
TCTAGTATCTCGCGCAGCGAATATCTATCCTCTGACGCACTTATTGAACA
AGTATCGGAGTGACAAGATATCAAAGAAGACTCAACTGATTATGTGGTTT
AGTGGCTCCTTGCGTGGCGCAATTGCCTGGGCACTTTCCCTGAGTCTGCC
CAGCCGCAACGGCTCAGATGACACTCGAAGGGTGGTCATTTCTTCAACAT
TAGCAATAGTTCTTTTCACAGTAATTGTGTTGGGTGGAGGCATGCTTCCT
TTACTGAGATTGGTCCGAATCGAAGATGAAGCCAATGAAGTGCAAAATAA
TGACAGCCAGGACAGCAGAGAGGGCTCTGAAGAACTACCAAATGGAACCA
CATTTCAGGAATCCCCATCTCTCGCGAGTTTGTTTGCCCAACGGTTGAGC
CGATTAGATGAAACTTGGCTCAGACCAACGCTCGTTGCATCATCGACTCG
AAGCATGATCGCGACCAACAGAACTCTGCAGACCCTGGCCGTTTCAGCAG
TTGAGCGTCTTACACCACATCAACTTGGTTCGTTGCTTGATTCATCGGCA
GCACCGGATTTATCATCCGTAGGCGAGCCACTGGCTGAGTGCAACCGAGA
AGAAGAGGATGTAGAACTCGCCGTTGTAAGCGTGAACAAAGACCAGCTTA
CTTTTGAATGA