Gvermi12159.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12159.t1
Unique Name	Gvermi12159.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	447

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:3626391..3627731 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2903.EOD30651
PFAMs	GDA1_CD39
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00002
KEGG ko	ko:K01510,ko:K01511
KEGG Reaction	R00086,R00122,R00155,R00159,R00328,R00335,R00514,R00569,R00719,R00961,R02092,R02095
KEGG Pathway	ko00230,ko00240,ko05169,map00230,map00240,map05169
Evalue	3.07e-56
EggNOG OGs	COG5371@1\|root,KOG1386@2759\|Eukaryota
EC	3.6.1.5,3.6.1.6
Description	8-oxo-dGTP phosphohydrolase activity
COG category	GO
BRITE	ko00000,ko00001,ko01000,ko04090

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12159	Gvermi12159	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 3626391..3627731 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12159.t1.start1	Gvermi12159.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 3626391..3626393 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12159.t1.CDS1	Gvermi12159.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 3626391..3627731 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12159.t1.exon1	Gvermi12159.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 3626391..3627731 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12159.t1.stop1	Gvermi12159.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 3627729..3627731 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12159.t1	Gvermi12159.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 3626391..3627731 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:3626391..3627731+
coding sequence from alignment at ScGOVlb_3404:3626391..3627731+

mRNA sequence

>Gvermi12159.t1 ID=Gvermi12159.t1|Name=Gvermi12159.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=447bp
MASKFAKSYEPLSRPTTSSPLSARGRLVKLAAAVVLTVFAVSALRSLYSP
SDYVYGLMIDAGSTGSRIHTFKFRKNPATAKLNVLDEDFHAIRPGLSAYK
QNANDAALSLEPLIQRAKSRVPIALRPQTPVVLRATAGLRMVGEQMADSI
LSEVRAYLRTSGFRFDEDSWASILSGNEEGIYSWITVNYLLDREPYDTVG
TLEMGGGSSQVAYVPRDKALNSASSNCSTSEENLDFKGEMLDLYTTSHLG
FGLQKGRATALKMFKEKNLLQDNPCLNAGAPVDIAIPFEENEKITMTGTG
DYTACRKLLDEHFMDPSMGQCKCDLCTYHGSAQPPPIPEYVAIAFYRGRT
VEIGLDTTLTVKDLRQKGEEICAMNVEQVTAKYPDVPQGVATDLCLDLAF
ITLHLEHGHGITEESGTTLMLMEKINDFELGWCLGAMQQTMAKLGM*

spliced messenger RNA

>Gvermi12159.t1 ID=Gvermi12159.t1|Name=Gvermi12159.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1341bp|location=Sequence derived from alignment at ScGOVlb_3404:3626391..3627731+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTCCAAGTTTGCCAAGTCGTACGAGCCGCTCAGCCGACCGACCAC
GTCGTCCCCGCTTTCCGCGCGCGGCCGCCTCGTCAAGCTCGCCGCCGCCG
TCGTGCTCACCGTTTTCGCCGTCTCTGCATTGCGCTCCCTCTACTCACCG
TCCGACTATGTGTACGGGTTGATGATTGACGCCGGGTCAACAGGATCTCG
AATCCACACCTTCAAATTCCGCAAGAACCCGGCCACGGCCAAGCTGAACG
TGCTCGACGAGGACTTCCACGCCATCAGGCCGGGCTTGTCGGCGTACAAG
CAGAATGCAAACGACGCTGCCCTGTCGCTGGAACCGCTCATACAGCGCGC
CAAGTCCCGAGTTCCCATTGCGCTGCGGCCCCAAACCCCCGTCGTGCTGC
GCGCCACCGCCGGGCTGAGGATGGTGGGAGAGCAAATGGCCGACTCCATT
CTGAGCGAGGTGCGCGCGTACCTCAGGACATCCGGCTTTCGCTTCGACGA
GGACTCGTGGGCATCCATTCTGTCGGGCAATGAGGAAGGCATTTACTCCT
GGATCACCGTCAACTATCTTCTCGACCGCGAACCGTACGACACCGTGGGC
ACGCTCGAAATGGGTGGCGGCTCGTCCCAAGTCGCATACGTACCGCGCGA
CAAAGCCCTAAACTCTGCGTCGTCCAACTGCTCCACCTCCGAAGAAAATC
TCGACTTTAAGGGCGAAATGCTCGATCTGTACACCACCTCTCACCTCGGT
TTTGGTTTACAAAAGGGTCGTGCCACAGCGCTCAAGATGTTCAAGGAGAA
GAATTTGTTACAAGACAACCCTTGTCTCAATGCCGGCGCCCCTGTGGATA
TCGCGATACCGTTTGAAGAAAATGAAAAGATAACGATGACAGGCACGGGC
GATTACACTGCCTGTCGCAAACTTCTTGACGAGCACTTCATGGACCCCTC
CATGGGACAATGCAAGTGCGACCTTTGCACATACCATGGCTCAGCCCAAC
CCCCCCCGATTCCGGAATATGTTGCCATTGCCTTCTATCGCGGACGAACC
GTAGAAATCGGCCTGGATACGACGCTAACTGTGAAAGATTTGAGACAAAA
GGGCGAGGAGATCTGCGCAATGAATGTAGAACAAGTCACCGCAAAATATC
CTGACGTTCCGCAAGGTGTCGCCACAGACCTTTGCCTCGACCTTGCATTC
ATTACTCTGCACCTTGAACACGGTCACGGTATAACCGAAGAGAGCGGTAC
CACTCTGATGCTTATGGAGAAGATCAACGATTTTGAGTTGGGGTGGTGCC
TCGGTGCCATGCAACAAACCATGGCAAAGCTCGGAATGTGA

protein sequence of Gvermi12159.t1

>Gvermi12159.t1 ID=Gvermi12159.t1|Name=Gvermi12159.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=447bp
MASKFAKSYEPLSRPTTSSPLSARGRLVKLAAAVVLTVFAVSALRSLYSP
SDYVYGLMIDAGSTGSRIHTFKFRKNPATAKLNVLDEDFHAIRPGLSAYK
QNANDAALSLEPLIQRAKSRVPIALRPQTPVVLRATAGLRMVGEQMADSI
LSEVRAYLRTSGFRFDEDSWASILSGNEEGIYSWITVNYLLDREPYDTVG
TLEMGGGSSQVAYVPRDKALNSASSNCSTSEENLDFKGEMLDLYTTSHLG
FGLQKGRATALKMFKEKNLLQDNPCLNAGAPVDIAIPFEENEKITMTGTG
DYTACRKLLDEHFMDPSMGQCKCDLCTYHGSAQPPPIPEYVAIAFYRGRT
VEIGLDTTLTVKDLRQKGEEICAMNVEQVTAKYPDVPQGVATDLCLDLAF
ITLHLEHGHGITEESGTTLMLMEKINDFELGWCLGAMQQTMAKLGM*

mRNA from alignment at ScGOVlb_3404:3626391..3627731+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12159.t1 ID=Gvermi12159.t1|Name=Gvermi12159.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1341bp|location=Sequence derived from alignment at ScGOVlb_3404:3626391..3627731+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTTCCAAGTTTGCCAAGTCGTACGAGCCGCTCAGCCGACCGACCAC
GTCGTCCCCGCTTTCCGCGCGCGGCCGCCTCGTCAAGCTCGCCGCCGCCG
TCGTGCTCACCGTTTTCGCCGTCTCTGCATTGCGCTCCCTCTACTCACCG
TCCGACTATGTGTACGGGTTGATGATTGACGCCGGGTCAACAGGATCTCG
AATCCACACCTTCAAATTCCGCAAGAACCCGGCCACGGCCAAGCTGAACG
TGCTCGACGAGGACTTCCACGCCATCAGGCCGGGCTTGTCGGCGTACAAG
CAGAATGCAAACGACGCTGCCCTGTCGCTGGAACCGCTCATACAGCGCGC
CAAGTCCCGAGTTCCCATTGCGCTGCGGCCCCAAACCCCCGTCGTGCTGC
GCGCCACCGCCGGGCTGAGGATGGTGGGAGAGCAAATGGCCGACTCCATT
CTGAGCGAGGTGCGCGCGTACCTCAGGACATCCGGCTTTCGCTTCGACGA
GGACTCGTGGGCATCCATTCTGTCGGGCAATGAGGAAGGCATTTACTCCT
GGATCACCGTCAACTATCTTCTCGACCGCGAACCGTACGACACCGTGGGC
ACGCTCGAAATGGGTGGCGGCTCGTCCCAAGTCGCATACGTACCGCGCGA
CAAAGCCCTAAACTCTGCGTCGTCCAACTGCTCCACCTCCGAAGAAAATC
TCGACTTTAAGGGCGAAATGCTCGATCTGTACACCACCTCTCACCTCGGT
TTTGGTTTACAAAAGGGTCGTGCCACAGCGCTCAAGATGTTCAAGGAGAA
GAATTTGTTACAAGACAACCCTTGTCTCAATGCCGGCGCCCCTGTGGATA
TCGCGATACCGTTTGAAGAAAATGAAAAGATAACGATGACAGGCACGGGC
GATTACACTGCCTGTCGCAAACTTCTTGACGAGCACTTCATGGACCCCTC
CATGGGACAATGCAAGTGCGACCTTTGCACATACCATGGCTCAGCCCAAC
CCCCCCCGATTCCGGAATATGTTGCCATTGCCTTCTATCGCGGACGAACC
GTAGAAATCGGCCTGGATACGACGCTAACTGTGAAAGATTTGAGACAAAA
GGGCGAGGAGATCTGCGCAATGAATGTAGAACAAGTCACCGCAAAATATC
CTGACGTTCCGCAAGGTGTCGCCACAGACCTTTGCCTCGACCTTGCATTC
ATTACTCTGCACCTTGAACACGGTCACGGTATAACCGAAGAGAGCGGTAC
CACTCTGATGCTTATGGAGAAGATCAACGATTTTGAGTTGGGGTGGTGCC
TCGGTGCCATGCAACAAACCATGGCAAAGCTCGGAATGTGA

Coding sequence (CDS) from alignment at ScGOVlb_3404:3626391..3627731+

>Gvermi12159.t1 ID=Gvermi12159.t1|Name=Gvermi12159.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1341bp|location=Sequence derived from alignment at ScGOVlb_3404:3626391..3627731+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTTCCAAGTTTGCCAAGTCGTACGAGCCGCTCAGCCGACCGACCAC
GTCGTCCCCGCTTTCCGCGCGCGGCCGCCTCGTCAAGCTCGCCGCCGCCG
TCGTGCTCACCGTTTTCGCCGTCTCTGCATTGCGCTCCCTCTACTCACCG
TCCGACTATGTGTACGGGTTGATGATTGACGCCGGGTCAACAGGATCTCG
AATCCACACCTTCAAATTCCGCAAGAACCCGGCCACGGCCAAGCTGAACG
TGCTCGACGAGGACTTCCACGCCATCAGGCCGGGCTTGTCGGCGTACAAG
CAGAATGCAAACGACGCTGCCCTGTCGCTGGAACCGCTCATACAGCGCGC
CAAGTCCCGAGTTCCCATTGCGCTGCGGCCCCAAACCCCCGTCGTGCTGC
GCGCCACCGCCGGGCTGAGGATGGTGGGAGAGCAAATGGCCGACTCCATT
CTGAGCGAGGTGCGCGCGTACCTCAGGACATCCGGCTTTCGCTTCGACGA
GGACTCGTGGGCATCCATTCTGTCGGGCAATGAGGAAGGCATTTACTCCT
GGATCACCGTCAACTATCTTCTCGACCGCGAACCGTACGACACCGTGGGC
ACGCTCGAAATGGGTGGCGGCTCGTCCCAAGTCGCATACGTACCGCGCGA
CAAAGCCCTAAACTCTGCGTCGTCCAACTGCTCCACCTCCGAAGAAAATC
TCGACTTTAAGGGCGAAATGCTCGATCTGTACACCACCTCTCACCTCGGT
TTTGGTTTACAAAAGGGTCGTGCCACAGCGCTCAAGATGTTCAAGGAGAA
GAATTTGTTACAAGACAACCCTTGTCTCAATGCCGGCGCCCCTGTGGATA
TCGCGATACCGTTTGAAGAAAATGAAAAGATAACGATGACAGGCACGGGC
GATTACACTGCCTGTCGCAAACTTCTTGACGAGCACTTCATGGACCCCTC
CATGGGACAATGCAAGTGCGACCTTTGCACATACCATGGCTCAGCCCAAC
CCCCCCCGATTCCGGAATATGTTGCCATTGCCTTCTATCGCGGACGAACC
GTAGAAATCGGCCTGGATACGACGCTAACTGTGAAAGATTTGAGACAAAA
GGGCGAGGAGATCTGCGCAATGAATGTAGAACAAGTCACCGCAAAATATC
CTGACGTTCCGCAAGGTGTCGCCACAGACCTTTGCCTCGACCTTGCATTC
ATTACTCTGCACCTTGAACACGGTCACGGTATAACCGAAGAGAGCGGTAC
CACTCTGATGCTTATGGAGAAGATCAACGATTTTGAGTTGGGGTGGTGCC
TCGGTGCCATGCAACAAACCATGGCAAAGCTCGGAATGTGA