Gvermi12149.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12149.t1
Unique NameGvermi12149.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length520
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3578883..3580442 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12149Gvermi12149Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3578883..3580442 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12149.t1.start1Gvermi12149.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3578883..3578885 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12149.t1.CDS1Gvermi12149.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3578883..3580442 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12149.t1.exon1Gvermi12149.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3578883..3580442 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12149.t1.stop1Gvermi12149.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3580440..3580442 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12149.t1Gvermi12149.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3578883..3580442 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12149.t1 ID=Gvermi12149.t1|Name=Gvermi12149.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=520bp
MYSQIEDLRKSTPHRVENRALVQAVQRISRSLVRRAGLKYGDTPYAILLS
EIWGQSQYATIEVLARKRQESGSRVRKPRDRSPKSVIAENLLETVSALSE
EVVRNEDEQERAEQMKKLSAARDRLVRILKRVKDDTLSVNERRLTIQIIG
RPGELDVDALRRLWGVPRVVFEVADLYHYFAKHGNQESIGGFYDTHLWGA
QQDTRIFNILYWKESLRSDQVGKGCVCPSRRVRTITQGIIRKVVKLLLTR
RRSPLFEKNIDTATEVVLYALHPDGHVVTFRESALKEAGFFQGLQAYEYS
RSFTASLQNLHLAKLNRMLKDLGVVKQMESERRGGKEPVEFLSLCTLRRY
CKERDTLTERALHAVVDRYIRREKCEMCNIDRLPISFGSFIRMYLALVGS
STDAGLKYWFSVLDQDGDGWISIGDVAHFYSERKSQSEKKNGIKLTNVQS
LWVRLCAMSHVLPSGKGINLNSLKELGKEEREFVMCALLVRRADDGNLTD
VAATIAESNGSKEGSIDIN*
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spliced messenger RNA

>Gvermi12149.t1 ID=Gvermi12149.t1|Name=Gvermi12149.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1560bp|location=Sequence derived from alignment at ScGOVlb_3404:3578883..3580442+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACTCTCAGATTGAAGATCTGCGTAAATCAACACCTCATCGTGTTGA
AAACCGTGCTTTGGTCCAAGCAGTTCAACGTATCAGCAGAAGCTTAGTCC
GTCGGGCTGGTCTGAAATATGGAGACACGCCATACGCAATTCTTCTTTCC
GAAATATGGGGACAAAGCCAATACGCTACAATAGAGGTGCTGGCTAGAAA
GCGGCAGGAGAGCGGCAGCCGTGTCCGCAAACCTCGTGATAGAAGCCCCA
AATCTGTCATTGCTGAAAATTTGCTAGAAACGGTTTCTGCGCTATCTGAA
GAGGTTGTCAGAAATGAAGATGAGCAAGAAAGAGCGGAACAGATGAAAAA
GCTCAGCGCTGCACGCGATAGACTTGTAAGAATCTTGAAGAGAGTAAAGG
ATGACACATTATCGGTGAATGAAAGACGACTCACAATACAAATTATTGGC
AGACCTGGGGAGCTCGATGTTGACGCACTGCGCCGGTTGTGGGGTGTTCC
GAGGGTTGTTTTTGAAGTTGCTGATCTCTATCACTATTTTGCAAAGCACG
GGAATCAGGAGTCCATTGGTGGATTCTATGATACACACCTGTGGGGCGCA
CAACAGGATACGAGAATATTTAATATTCTTTACTGGAAAGAGTCTCTTCG
CAGCGACCAGGTTGGCAAGGGTTGCGTCTGCCCGTCTCGACGCGTGCGAA
CAATAACACAGGGGATTATTCGAAAAGTTGTCAAGCTTTTGCTAACTAGA
AGACGTTCCCCGTTGTTTGAGAAGAATATTGATACTGCAACCGAAGTGGT
GTTGTATGCACTTCACCCTGATGGGCATGTTGTTACATTTCGGGAGTCGG
CTTTGAAGGAAGCTGGTTTCTTCCAAGGACTCCAAGCATATGAATATTCT
CGCTCGTTTACAGCGTCGTTGCAGAATCTACATCTTGCAAAGCTCAATCG
AATGCTCAAAGATTTGGGAGTCGTGAAGCAGATGGAGAGTGAGAGGAGAG
GTGGAAAGGAACCTGTTGAATTTCTGTCATTGTGTACTCTTCGTCGATAT
TGCAAGGAACGCGACACACTTACTGAACGGGCTCTTCACGCTGTTGTTGA
TCGGTACATACGGCGGGAAAAATGTGAAATGTGTAACATTGACAGGTTAC
CGATAAGTTTTGGTTCATTTATTCGAATGTATCTGGCCTTAGTGGGGAGC
TCAACTGATGCAGGTCTCAAGTACTGGTTTTCAGTTCTAGACCAAGATGG
GGATGGGTGGATAAGCATTGGAGATGTTGCTCATTTCTATTCAGAAAGAA
AGTCGCAGAGTGAAAAGAAGAATGGTATCAAGCTCACCAATGTGCAAAGC
CTGTGGGTTCGTTTGTGTGCGATGAGTCATGTTTTGCCCTCTGGGAAGGG
GATTAACTTGAATTCTCTCAAAGAGTTGGGAAAAGAGGAACGCGAGTTTG
TAATGTGTGCACTGCTTGTCAGACGAGCTGACGATGGAAATCTAACTGAC
GTTGCCGCTACTATTGCGGAATCAAATGGAAGCAAAGAAGGTTCCATAGA
TATAAACTAA
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protein sequence of Gvermi12149.t1

>Gvermi12149.t1 ID=Gvermi12149.t1|Name=Gvermi12149.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=520bp
MYSQIEDLRKSTPHRVENRALVQAVQRISRSLVRRAGLKYGDTPYAILLS
EIWGQSQYATIEVLARKRQESGSRVRKPRDRSPKSVIAENLLETVSALSE
EVVRNEDEQERAEQMKKLSAARDRLVRILKRVKDDTLSVNERRLTIQIIG
RPGELDVDALRRLWGVPRVVFEVADLYHYFAKHGNQESIGGFYDTHLWGA
QQDTRIFNILYWKESLRSDQVGKGCVCPSRRVRTITQGIIRKVVKLLLTR
RRSPLFEKNIDTATEVVLYALHPDGHVVTFRESALKEAGFFQGLQAYEYS
RSFTASLQNLHLAKLNRMLKDLGVVKQMESERRGGKEPVEFLSLCTLRRY
CKERDTLTERALHAVVDRYIRREKCEMCNIDRLPISFGSFIRMYLALVGS
STDAGLKYWFSVLDQDGDGWISIGDVAHFYSERKSQSEKKNGIKLTNVQS
LWVRLCAMSHVLPSGKGINLNSLKELGKEEREFVMCALLVRRADDGNLTD
VAATIAESNGSKEGSIDIN*
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mRNA from alignment at ScGOVlb_3404:3578883..3580442+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12149.t1 ID=Gvermi12149.t1|Name=Gvermi12149.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1560bp|location=Sequence derived from alignment at ScGOVlb_3404:3578883..3580442+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTACTCTCAGATTGAAGATCTGCGTAAATCAACACCTCATCGTGTTGA
AAACCGTGCTTTGGTCCAAGCAGTTCAACGTATCAGCAGAAGCTTAGTCC
GTCGGGCTGGTCTGAAATATGGAGACACGCCATACGCAATTCTTCTTTCC
GAAATATGGGGACAAAGCCAATACGCTACAATAGAGGTGCTGGCTAGAAA
GCGGCAGGAGAGCGGCAGCCGTGTCCGCAAACCTCGTGATAGAAGCCCCA
AATCTGTCATTGCTGAAAATTTGCTAGAAACGGTTTCTGCGCTATCTGAA
GAGGTTGTCAGAAATGAAGATGAGCAAGAAAGAGCGGAACAGATGAAAAA
GCTCAGCGCTGCACGCGATAGACTTGTAAGAATCTTGAAGAGAGTAAAGG
ATGACACATTATCGGTGAATGAAAGACGACTCACAATACAAATTATTGGC
AGACCTGGGGAGCTCGATGTTGACGCACTGCGCCGGTTGTGGGGTGTTCC
GAGGGTTGTTTTTGAAGTTGCTGATCTCTATCACTATTTTGCAAAGCACG
GGAATCAGGAGTCCATTGGTGGATTCTATGATACACACCTGTGGGGCGCA
CAACAGGATACGAGAATATTTAATATTCTTTACTGGAAAGAGTCTCTTCG
CAGCGACCAGGTTGGCAAGGGTTGCGTCTGCCCGTCTCGACGCGTGCGAA
CAATAACACAGGGGATTATTCGAAAAGTTGTCAAGCTTTTGCTAACTAGA
AGACGTTCCCCGTTGTTTGAGAAGAATATTGATACTGCAACCGAAGTGGT
GTTGTATGCACTTCACCCTGATGGGCATGTTGTTACATTTCGGGAGTCGG
CTTTGAAGGAAGCTGGTTTCTTCCAAGGACTCCAAGCATATGAATATTCT
CGCTCGTTTACAGCGTCGTTGCAGAATCTACATCTTGCAAAGCTCAATCG
AATGCTCAAAGATTTGGGAGTCGTGAAGCAGATGGAGAGTGAGAGGAGAG
GTGGAAAGGAACCTGTTGAATTTCTGTCATTGTGTACTCTTCGTCGATAT
TGCAAGGAACGCGACACACTTACTGAACGGGCTCTTCACGCTGTTGTTGA
TCGGTACATACGGCGGGAAAAATGTGAAATGTGTAACATTGACAGGTTAC
CGATAAGTTTTGGTTCATTTATTCGAATGTATCTGGCCTTAGTGGGGAGC
TCAACTGATGCAGGTCTCAAGTACTGGTTTTCAGTTCTAGACCAAGATGG
GGATGGGTGGATAAGCATTGGAGATGTTGCTCATTTCTATTCAGAAAGAA
AGTCGCAGAGTGAAAAGAAGAATGGTATCAAGCTCACCAATGTGCAAAGC
CTGTGGGTTCGTTTGTGTGCGATGAGTCATGTTTTGCCCTCTGGGAAGGG
GATTAACTTGAATTCTCTCAAAGAGTTGGGAAAAGAGGAACGCGAGTTTG
TAATGTGTGCACTGCTTGTCAGACGAGCTGACGATGGAAATCTAACTGAC
GTTGCCGCTACTATTGCGGAATCAAATGGAAGCAAAGAAGGTTCCATAGA
TATAAACTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:3578883..3580442+

>Gvermi12149.t1 ID=Gvermi12149.t1|Name=Gvermi12149.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1560bp|location=Sequence derived from alignment at ScGOVlb_3404:3578883..3580442+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTACTCTCAGATTGAAGATCTGCGTAAATCAACACCTCATCGTGTTGA
AAACCGTGCTTTGGTCCAAGCAGTTCAACGTATCAGCAGAAGCTTAGTCC
GTCGGGCTGGTCTGAAATATGGAGACACGCCATACGCAATTCTTCTTTCC
GAAATATGGGGACAAAGCCAATACGCTACAATAGAGGTGCTGGCTAGAAA
GCGGCAGGAGAGCGGCAGCCGTGTCCGCAAACCTCGTGATAGAAGCCCCA
AATCTGTCATTGCTGAAAATTTGCTAGAAACGGTTTCTGCGCTATCTGAA
GAGGTTGTCAGAAATGAAGATGAGCAAGAAAGAGCGGAACAGATGAAAAA
GCTCAGCGCTGCACGCGATAGACTTGTAAGAATCTTGAAGAGAGTAAAGG
ATGACACATTATCGGTGAATGAAAGACGACTCACAATACAAATTATTGGC
AGACCTGGGGAGCTCGATGTTGACGCACTGCGCCGGTTGTGGGGTGTTCC
GAGGGTTGTTTTTGAAGTTGCTGATCTCTATCACTATTTTGCAAAGCACG
GGAATCAGGAGTCCATTGGTGGATTCTATGATACACACCTGTGGGGCGCA
CAACAGGATACGAGAATATTTAATATTCTTTACTGGAAAGAGTCTCTTCG
CAGCGACCAGGTTGGCAAGGGTTGCGTCTGCCCGTCTCGACGCGTGCGAA
CAATAACACAGGGGATTATTCGAAAAGTTGTCAAGCTTTTGCTAACTAGA
AGACGTTCCCCGTTGTTTGAGAAGAATATTGATACTGCAACCGAAGTGGT
GTTGTATGCACTTCACCCTGATGGGCATGTTGTTACATTTCGGGAGTCGG
CTTTGAAGGAAGCTGGTTTCTTCCAAGGACTCCAAGCATATGAATATTCT
CGCTCGTTTACAGCGTCGTTGCAGAATCTACATCTTGCAAAGCTCAATCG
AATGCTCAAAGATTTGGGAGTCGTGAAGCAGATGGAGAGTGAGAGGAGAG
GTGGAAAGGAACCTGTTGAATTTCTGTCATTGTGTACTCTTCGTCGATAT
TGCAAGGAACGCGACACACTTACTGAACGGGCTCTTCACGCTGTTGTTGA
TCGGTACATACGGCGGGAAAAATGTGAAATGTGTAACATTGACAGGTTAC
CGATAAGTTTTGGTTCATTTATTCGAATGTATCTGGCCTTAGTGGGGAGC
TCAACTGATGCAGGTCTCAAGTACTGGTTTTCAGTTCTAGACCAAGATGG
GGATGGGTGGATAAGCATTGGAGATGTTGCTCATTTCTATTCAGAAAGAA
AGTCGCAGAGTGAAAAGAAGAATGGTATCAAGCTCACCAATGTGCAAAGC
CTGTGGGTTCGTTTGTGTGCGATGAGTCATGTTTTGCCCTCTGGGAAGGG
GATTAACTTGAATTCTCTCAAAGAGTTGGGAAAAGAGGAACGCGAGTTTG
TAATGTGTGCACTGCTTGTCAGACGAGCTGACGATGGAAATCTAACTGAC
GTTGCCGCTACTATTGCGGAATCAAATGGAAGCAAAGAAGGTTCCATAGA
TATAAACTAA
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