Gvermi12111.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12111.t1
Unique NameGvermi12111.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length282
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3444032..3444998 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709020.1
Preferred nameTMBIM4
PFAMsBax1-I
Max annot lvl2759|Eukaryota
KEGG koko:K06890
GOsGO:0000139,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005783,GO:0005789,GO:0005794,GO:0005795,GO:0006915,GO:0006950,GO:0006986,GO:0007154,GO:0007165,GO:0008150,GO:0008219,GO:0009966,GO:0009987,GO:0010033,GO:0010646,GO:0010941,GO:0012501,GO:0012505,GO:0016020,GO:0016021,GO:0019722,GO:0019932,GO:0023051,GO:0023052,GO:0030176,GO:0030968,GO:0031090,GO:0031224,GO:0031227,GO:0031984,GO:0033554,GO:0034620,GO:0034976,GO:0035556,GO:0035966,GO:0035967,GO:0042175,GO:0042221,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0048519,GO:0048523,GO:0048583,GO:0050789,GO:0050794,GO:0050848,GO:0050896,GO:0051716,GO:0060548,GO:0065007,GO:0070887,GO:0071310,GO:0098588,GO:0098791,GO:0098827,GO:1902531
Evalue8.24e-70
EggNOG OGsCOG0670@1|root,KOG2322@2759|Eukaryota
Descriptionnegative regulation of Fas signaling pathway
COG categoryA
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12111Gvermi12111Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3444032..3444998 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12111.t1Gvermi12111.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3444032..3444998 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12111.t1.start1Gvermi12111.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3444032..3444034 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12111.t1.CDS1Gvermi12111.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3444032..3444755 +
Gvermi12111.t1.CDS2Gvermi12111.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3444877..3444998 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12111.t1.exon1Gvermi12111.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3444032..3444755 +
Gvermi12111.t1.exon2Gvermi12111.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3444877..3444998 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12111.t1.intron1Gvermi12111.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 3444756..3444876 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12111.t1.stop1Gvermi12111.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3444996..3444998 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12111.t1 ID=Gvermi12111.t1|Name=Gvermi12111.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=282bp
MSARRESMDTEPMRGLPRGIGDASRSVNREAKAAMSMSNKTGSGEDYAND
FAYGTSVATCEPIIRLGFIRKVYGILAAQLALTVLICAAFMFIKPLRMFA
VNASGFLLIISMIGTFGSLFALLAYKDSHPTNLQLLAAFTAFESFLVGSV
CAQYQQSGLGGLVLEALVITLAVFSGITLYAFVSKKDFSFMGGALYAALI
GLLVASFVNLFMGFTGNKSPLLAMLISYGGALLFSLYILYDTSMIMHHLG
PDDAIMGAIMLYLDLLNLFLYILSILSRNRD*
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spliced messenger RNA

>Gvermi12111.t1 ID=Gvermi12111.t1|Name=Gvermi12111.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=846bp|location=Sequence derived from alignment at ScGOVlb_3404:3444032..3444998+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGCCAGGCGTGAATCCATGGACACAGAACCCATGCGAGGTCTGCC
ACGCGGTATTGGCGACGCCTCCCGCAGCGTCAACCGGGAGGCCAAAGCGG
CGATGTCCATGTCGAACAAGACGGGCTCTGGCGAAGATTACGCAAACGAC
TTCGCCTACGGCACCAGTGTGGCGACATGCGAGCCTATCATCCGTCTGGG
TTTCATTCGCAAGGTTTACGGCATTCTAGCTGCTCAGCTTGCTCTTACCG
TGCTCATTTGTGCCGCTTTCATGTTCATTAAGCCGTTGCGCATGTTTGCC
GTCAACGCCAGTGGCTTTCTTCTAATCATTTCCATGATAGGAACTTTCGG
TTCTCTGTTTGCCCTGCTTGCGTACAAGGATTCACACCCTACCAATTTGC
AACTGCTGGCTGCTTTCACGGCCTTTGAATCCTTCTTGGTCGGTTCTGTT
TGCGCCCAGTATCAGCAGTCTGGCCTAGGAGGGTTAGTGCTCGAAGCTCT
CGTGATCACGTTGGCTGTATTCTCTGGTATTACTCTCTATGCGTTTGTTT
CGAAAAAGGACTTTTCATTCATGGGAGGCGCCTTGTATGCTGCGTTAATT
GGTCTCTTGGTGGCCTCTTTTGTCAACCTTTTCATGGGTTTCACTGGAAA
CAAGAGTCCGTTACTCGCCATGCTTATTTCCTACGGAGGGGCTCTGTTAT
TCAGTCTCTACATTCTCTACGACACGTCGATGATCATGCACCATCTTGGA
CCCGATGATGCCATAATGGGTGCAATCATGCTGTACCTGGATCTTCTGAA
TCTGTTTTTGTACATTCTATCAATCCTATCCAGAAATAGAGACTAA
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protein sequence of Gvermi12111.t1

>Gvermi12111.t1 ID=Gvermi12111.t1|Name=Gvermi12111.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=282bp
MSARRESMDTEPMRGLPRGIGDASRSVNREAKAAMSMSNKTGSGEDYAND
FAYGTSVATCEPIIRLGFIRKVYGILAAQLALTVLICAAFMFIKPLRMFA
VNASGFLLIISMIGTFGSLFALLAYKDSHPTNLQLLAAFTAFESFLVGSV
CAQYQQSGLGGLVLEALVITLAVFSGITLYAFVSKKDFSFMGGALYAALI
GLLVASFVNLFMGFTGNKSPLLAMLISYGGALLFSLYILYDTSMIMHHLG
PDDAIMGAIMLYLDLLNLFLYILSILSRNRD*
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mRNA from alignment at ScGOVlb_3404:3444032..3444998+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12111.t1 ID=Gvermi12111.t1|Name=Gvermi12111.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=967bp|location=Sequence derived from alignment at ScGOVlb_3404:3444032..3444998+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGGCCAGGCGTGAATCCATGGACACAGAACCCATGCGAGGTCTGCC
ACGCGGTATTGGCGACGCCTCCCGCAGCGTCAACCGGGAGGCCAAAGCGG
CGATGTCCATGTCGAACAAGACGGGCTCTGGCGAAGATTACGCAAACGAC
TTCGCCTACGGCACCAGTGTGGCGACATGCGAGCCTATCATCCGTCTGGG
TTTCATTCGCAAGGTTTACGGCATTCTAGCTGCTCAGCTTGCTCTTACCG
TGCTCATTTGTGCCGCTTTCATGTTCATTAAGCCGTTGCGCATGTTTGCC
GTCAACGCCAGTGGCTTTCTTCTAATCATTTCCATGATAGGAACTTTCGG
TTCTCTGTTTGCCCTGCTTGCGTACAAGGATTCACACCCTACCAATTTGC
AACTGCTGGCTGCTTTCACGGCCTTTGAATCCTTCTTGGTCGGTTCTGTT
TGCGCCCAGTATCAGCAGTCTGGCCTAGGAGGGTTAGTGCTCGAAGCTCT
CGTGATCACGTTGGCTGTATTCTCTGGTATTACTCTCTATGCGTTTGTTT
CGAAAAAGGACTTTTCATTCATGGGAGGCGCCTTGTATGCTGCGTTAATT
GGTCTCTTGGTGGCCTCTTTTGTCAACCTTTTCATGGGTTTCACTGGAAA
CAAGAGTCCGTTACTCGCCATGCTTATTTCCTACGGAGGGGCTCTGTTAT
TCAGTCTCTACATTCTCTACGACAGTAAGTTGAACACAAGTCAAAACGAA
ACTACTCGCGATTTCCAAAGCATTGTCACAATACTTAAGAAATGCAACGT
TTCTAACATGTTTTCATTGTGACTCTTTTTGTCTGATTTGAACAGCGTCG
ATGATCATGCACCATCTTGGACCCGATGATGCCATAATGGGTGCAATCAT
GCTGTACCTGGATCTTCTGAATCTGTTTTTGTACATTCTATCAATCCTAT
CCAGAAATAGAGACTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:3444032..3444998+

>Gvermi12111.t1 ID=Gvermi12111.t1|Name=Gvermi12111.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=846bp|location=Sequence derived from alignment at ScGOVlb_3404:3444032..3444998+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGGCCAGGCGTGAATCCATGGACACAGAACCCATGCGAGGTCTGCC
ACGCGGTATTGGCGACGCCTCCCGCAGCGTCAACCGGGAGGCCAAAGCGG
CGATGTCCATGTCGAACAAGACGGGCTCTGGCGAAGATTACGCAAACGAC
TTCGCCTACGGCACCAGTGTGGCGACATGCGAGCCTATCATCCGTCTGGG
TTTCATTCGCAAGGTTTACGGCATTCTAGCTGCTCAGCTTGCTCTTACCG
TGCTCATTTGTGCCGCTTTCATGTTCATTAAGCCGTTGCGCATGTTTGCC
GTCAACGCCAGTGGCTTTCTTCTAATCATTTCCATGATAGGAACTTTCGG
TTCTCTGTTTGCCCTGCTTGCGTACAAGGATTCACACCCTACCAATTTGC
AACTGCTGGCTGCTTTCACGGCCTTTGAATCCTTCTTGGTCGGTTCTGTT
TGCGCCCAGTATCAGCAGTCTGGCCTAGGAGGGTTAGTGCTCGAAGCTCT
CGTGATCACGTTGGCTGTATTCTCTGGTATTACTCTCTATGCGTTTGTTT
CGAAAAAGGACTTTTCATTCATGGGAGGCGCCTTGTATGCTGCGTTAATT
GGTCTCTTGGTGGCCTCTTTTGTCAACCTTTTCATGGGTTTCACTGGAAA
CAAGAGTCCGTTACTCGCCATGCTTATTTCCTACGGAGGGGCTCTGTTAT
TCAGTCTCTACATTCTCTACGACACGTCGATGATCATGCACCATCTTGGA
CCCGATGATGCCATAATGGGTGCAATCATGCTGTACCTGGATCTTCTGAA
TCTGTTTTTGTACATTCTATCAATCCTATCCAGAAATAGAGACTAA
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