Gvermi12102.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12102.t1
Unique NameGvermi12102.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length617
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3416624..3418474 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12102Gvermi12102Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3416456..3418474 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12102.t1.start1Gvermi12102.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3416624..3416626 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12102.t1.CDS1Gvermi12102.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3416624..3418474 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12102.t1.exon1Gvermi12102.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3416624..3418474 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12102.t1.stop1Gvermi12102.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3418472..3418474 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12102.t1Gvermi12102.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3416624..3418474 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12102.t1 ID=Gvermi12102.t1|Name=Gvermi12102.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=617bp
LPWQPSGTDPQQQSLELEFGGETLNENQTLSHYHIPEVYDHADGFLKTIS
DSGYLDPDKKVEALDKACAVVRGISRGEKDMERLIGAAFDDANDDTPASP
SAQPSLRAMKRSRLSRIPSLNLGALNYLGPEGKPLTKLFSPSAPPTPRQL
IRKLSIMRPDLYDSEAAVKATSSLSLRNIANLANNIPARPSESPNIGSGE
LKRGNTWFHEIMNSMNTSLRDPRKRAVHHETQEEVEGDSEGENGLGTDEG
NVSGDRKDLPFEGQTKIRLRSTQNKMDSSSADVDENETTTAPINDMNVIN
ETLIKPEGDTLTAAKSSTKDQDGSKPETDGGSSTTSVSKKDPEEAEMKKS
TRNQIDVSNTSIQTPPKQVTTSSESHSIVPSRPIVHQDKQVIGLTPERQA
SGEEVRQPRKRGRKRKNPHLTEEERKAQRQAQNRESAKLSRIRRKHLTME
YERRVNTLEGENENLRDTISGLEDRLQMLQNLLTITVQRRSIPQVHPSLI
SSATAAIGQGPQTRLNPTINPHIPMAGQPGAVSQAALVSRALNAQALMGN
PNIMARTGAMPHTGMMHAQNVLSTQRPVNANDSLAGHTQALSASRPLGSK
APSHSNPLTNFPYKNF*
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spliced messenger RNA

>Gvermi12102.t1 ID=Gvermi12102.t1|Name=Gvermi12102.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1851bp|location=Sequence derived from alignment at ScGOVlb_3404:3416624..3418474+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGCCATGGCAACCCTCCGGCACCGACCCGCAGCAACAATCACTTGAGCT
CGAATTCGGAGGGGAAACATTGAATGAAAACCAAACCTTGAGCCACTATC
ATATCCCAGAGGTATATGACCATGCGGATGGCTTCCTGAAAACTATTTCG
GACAGCGGCTACCTAGATCCTGATAAGAAGGTCGAGGCTCTGGATAAGGC
ATGTGCCGTTGTACGAGGCATTTCAAGGGGAGAAAAGGACATGGAGCGTC
TCATTGGCGCTGCATTTGATGACGCCAATGACGATACACCTGCTTCACCG
TCTGCTCAACCTTCGCTTCGCGCCATGAAGCGTTCTCGTCTAAGTCGCAT
ACCTTCCTTGAACTTGGGAGCACTGAACTACCTTGGACCCGAAGGGAAGC
CCTTGACAAAACTTTTCTCTCCGTCAGCGCCACCCACGCCTCGGCAACTC
ATTAGAAAGCTTAGTATCATGCGACCGGACCTTTACGATTCAGAAGCTGC
GGTAAAAGCTACAAGCTCCTTGTCACTGAGGAATATCGCAAACTTGGCAA
ATAACATACCTGCTCGCCCAAGTGAATCTCCGAATATCGGGAGTGGAGAA
CTTAAGAGAGGGAACACATGGTTTCACGAAATTATGAATTCCATGAACAC
CTCCCTGCGAGATCCGAGAAAACGTGCAGTCCATCATGAGACCCAAGAAG
AAGTAGAGGGTGATAGTGAAGGTGAAAATGGCCTGGGAACGGACGAAGGA
AACGTATCTGGTGACCGGAAGGATCTACCTTTCGAGGGGCAAACAAAAAT
TCGGCTTCGATCCACCCAAAACAAAATGGACTCGTCCTCAGCTGATGTAG
ATGAAAACGAAACAACGACAGCCCCGATAAACGATATGAACGTCATCAAC
GAAACGTTAATCAAGCCAGAAGGGGATACATTGACTGCTGCGAAATCGTC
GACAAAGGATCAAGATGGATCTAAGCCAGAAACAGATGGTGGCTCGTCGA
CTACATCTGTATCAAAGAAGGATCCGGAAGAGGCAGAAATGAAGAAAAGC
ACTCGGAACCAGATAGATGTATCAAATACGAGCATCCAAACGCCTCCGAA
ACAGGTAACAACGTCGAGCGAATCGCACTCTATAGTGCCATCTCGACCGA
TAGTGCATCAAGACAAACAAGTTATTGGCTTGACTCCGGAACGCCAAGCT
AGCGGGGAGGAGGTGAGACAGCCGAGGAAACGAGGAAGGAAACGAAAAAA
CCCGCATCTCACGGAAGAGGAAAGGAAGGCACAAAGGCAAGCGCAGAATA
GAGAAAGTGCCAAGCTCTCTCGAATCCGTCGGAAGCACTTGACTATGGAA
TACGAAAGGAGAGTGAACACTCTAGAAGGCGAGAACGAAAATCTACGAGA
CACCATCAGTGGACTGGAGGATCGTCTTCAAATGCTACAGAATTTGCTTA
CCATCACTGTGCAACGGAGAAGCATCCCGCAAGTTCACCCTTCATTAATA
TCATCGGCCACTGCAGCCATTGGCCAAGGGCCACAAACCCGACTCAATCC
AACAATAAACCCTCATATACCCATGGCAGGCCAGCCGGGCGCTGTCTCAC
AAGCTGCGCTTGTTTCACGGGCCCTCAACGCACAGGCTTTGATGGGAAAC
CCGAACATAATGGCTCGAACTGGTGCAATGCCGCACACGGGTATGATGCA
TGCACAAAACGTGTTGAGCACGCAGCGCCCCGTCAACGCTAACGACTCTC
TTGCAGGACACACTCAAGCACTTTCAGCGTCAAGGCCTCTAGGATCCAAG
GCTCCGTCGCATTCAAATCCGTTGACAAACTTTCCGTACAAAAACTTTTG
A
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protein sequence of Gvermi12102.t1

>Gvermi12102.t1 ID=Gvermi12102.t1|Name=Gvermi12102.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=617bp
LPWQPSGTDPQQQSLELEFGGETLNENQTLSHYHIPEVYDHADGFLKTIS
DSGYLDPDKKVEALDKACAVVRGISRGEKDMERLIGAAFDDANDDTPASP
SAQPSLRAMKRSRLSRIPSLNLGALNYLGPEGKPLTKLFSPSAPPTPRQL
IRKLSIMRPDLYDSEAAVKATSSLSLRNIANLANNIPARPSESPNIGSGE
LKRGNTWFHEIMNSMNTSLRDPRKRAVHHETQEEVEGDSEGENGLGTDEG
NVSGDRKDLPFEGQTKIRLRSTQNKMDSSSADVDENETTTAPINDMNVIN
ETLIKPEGDTLTAAKSSTKDQDGSKPETDGGSSTTSVSKKDPEEAEMKKS
TRNQIDVSNTSIQTPPKQVTTSSESHSIVPSRPIVHQDKQVIGLTPERQA
SGEEVRQPRKRGRKRKNPHLTEEERKAQRQAQNRESAKLSRIRRKHLTME
YERRVNTLEGENENLRDTISGLEDRLQMLQNLLTITVQRRSIPQVHPSLI
SSATAAIGQGPQTRLNPTINPHIPMAGQPGAVSQAALVSRALNAQALMGN
PNIMARTGAMPHTGMMHAQNVLSTQRPVNANDSLAGHTQALSASRPLGSK
APSHSNPLTNFPYKNF*
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mRNA from alignment at ScGOVlb_3404:3416624..3418474+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12102.t1 ID=Gvermi12102.t1|Name=Gvermi12102.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1851bp|location=Sequence derived from alignment at ScGOVlb_3404:3416624..3418474+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGCCATGGCAACCCTCCGGCACCGACCCGCAGCAACAATCACTTGAGCT
CGAATTCGGAGGGGAAACATTGAATGAAAACCAAACCTTGAGCCACTATC
ATATCCCAGAGGTATATGACCATGCGGATGGCTTCCTGAAAACTATTTCG
GACAGCGGCTACCTAGATCCTGATAAGAAGGTCGAGGCTCTGGATAAGGC
ATGTGCCGTTGTACGAGGCATTTCAAGGGGAGAAAAGGACATGGAGCGTC
TCATTGGCGCTGCATTTGATGACGCCAATGACGATACACCTGCTTCACCG
TCTGCTCAACCTTCGCTTCGCGCCATGAAGCGTTCTCGTCTAAGTCGCAT
ACCTTCCTTGAACTTGGGAGCACTGAACTACCTTGGACCCGAAGGGAAGC
CCTTGACAAAACTTTTCTCTCCGTCAGCGCCACCCACGCCTCGGCAACTC
ATTAGAAAGCTTAGTATCATGCGACCGGACCTTTACGATTCAGAAGCTGC
GGTAAAAGCTACAAGCTCCTTGTCACTGAGGAATATCGCAAACTTGGCAA
ATAACATACCTGCTCGCCCAAGTGAATCTCCGAATATCGGGAGTGGAGAA
CTTAAGAGAGGGAACACATGGTTTCACGAAATTATGAATTCCATGAACAC
CTCCCTGCGAGATCCGAGAAAACGTGCAGTCCATCATGAGACCCAAGAAG
AAGTAGAGGGTGATAGTGAAGGTGAAAATGGCCTGGGAACGGACGAAGGA
AACGTATCTGGTGACCGGAAGGATCTACCTTTCGAGGGGCAAACAAAAAT
TCGGCTTCGATCCACCCAAAACAAAATGGACTCGTCCTCAGCTGATGTAG
ATGAAAACGAAACAACGACAGCCCCGATAAACGATATGAACGTCATCAAC
GAAACGTTAATCAAGCCAGAAGGGGATACATTGACTGCTGCGAAATCGTC
GACAAAGGATCAAGATGGATCTAAGCCAGAAACAGATGGTGGCTCGTCGA
CTACATCTGTATCAAAGAAGGATCCGGAAGAGGCAGAAATGAAGAAAAGC
ACTCGGAACCAGATAGATGTATCAAATACGAGCATCCAAACGCCTCCGAA
ACAGGTAACAACGTCGAGCGAATCGCACTCTATAGTGCCATCTCGACCGA
TAGTGCATCAAGACAAACAAGTTATTGGCTTGACTCCGGAACGCCAAGCT
AGCGGGGAGGAGGTGAGACAGCCGAGGAAACGAGGAAGGAAACGAAAAAA
CCCGCATCTCACGGAAGAGGAAAGGAAGGCACAAAGGCAAGCGCAGAATA
GAGAAAGTGCCAAGCTCTCTCGAATCCGTCGGAAGCACTTGACTATGGAA
TACGAAAGGAGAGTGAACACTCTAGAAGGCGAGAACGAAAATCTACGAGA
CACCATCAGTGGACTGGAGGATCGTCTTCAAATGCTACAGAATTTGCTTA
CCATCACTGTGCAACGGAGAAGCATCCCGCAAGTTCACCCTTCATTAATA
TCATCGGCCACTGCAGCCATTGGCCAAGGGCCACAAACCCGACTCAATCC
AACAATAAACCCTCATATACCCATGGCAGGCCAGCCGGGCGCTGTCTCAC
AAGCTGCGCTTGTTTCACGGGCCCTCAACGCACAGGCTTTGATGGGAAAC
CCGAACATAATGGCTCGAACTGGTGCAATGCCGCACACGGGTATGATGCA
TGCACAAAACGTGTTGAGCACGCAGCGCCCCGTCAACGCTAACGACTCTC
TTGCAGGACACACTCAAGCACTTTCAGCGTCAAGGCCTCTAGGATCCAAG
GCTCCGTCGCATTCAAATCCGTTGACAAACTTTCCGTACAAAAACTTTTG
A
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Coding sequence (CDS) from alignment at ScGOVlb_3404:3416624..3418474+

>Gvermi12102.t1 ID=Gvermi12102.t1|Name=Gvermi12102.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1851bp|location=Sequence derived from alignment at ScGOVlb_3404:3416624..3418474+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGCCATGGCAACCCTCCGGCACCGACCCGCAGCAACAATCACTTGAGCT
CGAATTCGGAGGGGAAACATTGAATGAAAACCAAACCTTGAGCCACTATC
ATATCCCAGAGGTATATGACCATGCGGATGGCTTCCTGAAAACTATTTCG
GACAGCGGCTACCTAGATCCTGATAAGAAGGTCGAGGCTCTGGATAAGGC
ATGTGCCGTTGTACGAGGCATTTCAAGGGGAGAAAAGGACATGGAGCGTC
TCATTGGCGCTGCATTTGATGACGCCAATGACGATACACCTGCTTCACCG
TCTGCTCAACCTTCGCTTCGCGCCATGAAGCGTTCTCGTCTAAGTCGCAT
ACCTTCCTTGAACTTGGGAGCACTGAACTACCTTGGACCCGAAGGGAAGC
CCTTGACAAAACTTTTCTCTCCGTCAGCGCCACCCACGCCTCGGCAACTC
ATTAGAAAGCTTAGTATCATGCGACCGGACCTTTACGATTCAGAAGCTGC
GGTAAAAGCTACAAGCTCCTTGTCACTGAGGAATATCGCAAACTTGGCAA
ATAACATACCTGCTCGCCCAAGTGAATCTCCGAATATCGGGAGTGGAGAA
CTTAAGAGAGGGAACACATGGTTTCACGAAATTATGAATTCCATGAACAC
CTCCCTGCGAGATCCGAGAAAACGTGCAGTCCATCATGAGACCCAAGAAG
AAGTAGAGGGTGATAGTGAAGGTGAAAATGGCCTGGGAACGGACGAAGGA
AACGTATCTGGTGACCGGAAGGATCTACCTTTCGAGGGGCAAACAAAAAT
TCGGCTTCGATCCACCCAAAACAAAATGGACTCGTCCTCAGCTGATGTAG
ATGAAAACGAAACAACGACAGCCCCGATAAACGATATGAACGTCATCAAC
GAAACGTTAATCAAGCCAGAAGGGGATACATTGACTGCTGCGAAATCGTC
GACAAAGGATCAAGATGGATCTAAGCCAGAAACAGATGGTGGCTCGTCGA
CTACATCTGTATCAAAGAAGGATCCGGAAGAGGCAGAAATGAAGAAAAGC
ACTCGGAACCAGATAGATGTATCAAATACGAGCATCCAAACGCCTCCGAA
ACAGGTAACAACGTCGAGCGAATCGCACTCTATAGTGCCATCTCGACCGA
TAGTGCATCAAGACAAACAAGTTATTGGCTTGACTCCGGAACGCCAAGCT
AGCGGGGAGGAGGTGAGACAGCCGAGGAAACGAGGAAGGAAACGAAAAAA
CCCGCATCTCACGGAAGAGGAAAGGAAGGCACAAAGGCAAGCGCAGAATA
GAGAAAGTGCCAAGCTCTCTCGAATCCGTCGGAAGCACTTGACTATGGAA
TACGAAAGGAGAGTGAACACTCTAGAAGGCGAGAACGAAAATCTACGAGA
CACCATCAGTGGACTGGAGGATCGTCTTCAAATGCTACAGAATTTGCTTA
CCATCACTGTGCAACGGAGAAGCATCCCGCAAGTTCACCCTTCATTAATA
TCATCGGCCACTGCAGCCATTGGCCAAGGGCCACAAACCCGACTCAATCC
AACAATAAACCCTCATATACCCATGGCAGGCCAGCCGGGCGCTGTCTCAC
AAGCTGCGCTTGTTTCACGGGCCCTCAACGCACAGGCTTTGATGGGAAAC
CCGAACATAATGGCTCGAACTGGTGCAATGCCGCACACGGGTATGATGCA
TGCACAAAACGTGTTGAGCACGCAGCGCCCCGTCAACGCTAACGACTCTC
TTGCAGGACACACTCAAGCACTTTCAGCGTCAAGGCCTCTAGGATCCAAG
GCTCCGTCGCATTCAAATCCGTTGACAAACTTTCCGTACAAAAACTTTTG
A
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