Gvermi12040.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12040.t1
Unique NameGvermi12040.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length381
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3086552..3087694 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12040Gvermi12040Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3086552..3087694 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12040.t1.start1Gvermi12040.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3086552..3086554 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12040.t1.CDS1Gvermi12040.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3086552..3087694 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12040.t1.exon1Gvermi12040.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3086552..3087694 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12040.t1.stop1Gvermi12040.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3087692..3087694 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12040.t1Gvermi12040.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3086552..3087694 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12040.t1 ID=Gvermi12040.t1|Name=Gvermi12040.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=381bp
MPPSPEPDRKRARTSSLAKDELNLSDIDVSRVDDCPTRPPQAERKRELER
NRRNLVNIRFVELEKELIRSGPCAVDPSERGSASSSEFVAKGKRIDKEAV
LKEAAQRIAALRKEVDSQASHIASITDEISHLRAEKIELRDDKNYLRGEL
DNARNETRRLRADNIGLWEALRKQSVVKNYLAPDLAKIPVDLFARKQQSM
ASSAAPSASNAPFSQGIQAQPPSTALPSASQPQQAMYPTSSISASRPRTI
DPETSNEPNPPMLRGDAILMHQTSEELSDLFATYIPGVMTPSQRASAQNL
GPLPELSQPTSLPLCQLRNSQLQLSQLLSSAQSNENQSVVSPSLKRQGPT
QANNLNSPDGGNSRRESTNEDPLSDIAFCV*
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spliced messenger RNA

>Gvermi12040.t1 ID=Gvermi12040.t1|Name=Gvermi12040.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1143bp|location=Sequence derived from alignment at ScGOVlb_3404:3086552..3087694+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCCGTCGCCCGAGCCGGACCGCAAACGCGCTCGCACATCCTCCTT
GGCAAAGGACGAGCTCAATCTCTCAGACATCGACGTATCACGCGTCGACG
ACTGTCCAACACGTCCGCCGCAGGCGGAGCGCAAGCGAGAGTTGGAACGA
AACCGCCGCAATCTGGTTAACATTCGCTTCGTGGAGCTCGAAAAGGAGCT
CATCCGCTCGGGTCCCTGCGCCGTAGACCCTTCGGAACGCGGATCTGCGT
CCTCGTCCGAGTTTGTTGCCAAGGGTAAACGCATAGATAAGGAGGCTGTT
CTGAAGGAGGCCGCCCAGCGTATTGCAGCCTTGCGGAAAGAAGTCGACTC
ACAGGCCTCACATATCGCCAGCATAACCGACGAGATTTCTCATTTGCGCG
CCGAAAAGATAGAACTTCGCGATGATAAAAACTATTTGCGTGGCGAGTTG
GACAACGCACGCAACGAAACAAGGCGTTTGCGAGCTGACAATATCGGCTT
GTGGGAAGCGCTCAGAAAGCAGTCCGTTGTCAAGAACTACCTCGCTCCGG
ACCTCGCCAAGATTCCAGTTGACTTGTTTGCTCGCAAACAGCAAAGTATG
GCATCGTCTGCCGCACCGTCCGCAAGTAATGCACCTTTTTCGCAAGGCAT
ACAAGCACAGCCACCTTCCACGGCACTCCCATCAGCTTCACAACCTCAGC
AGGCCATGTATCCCACTTCGAGTATCAGTGCATCTCGCCCGCGAACCATA
GATCCGGAAACTTCAAATGAACCTAATCCACCTATGCTGCGCGGTGATGC
AATTCTTATGCATCAGACTTCGGAAGAGCTTAGTGATCTTTTCGCTACCT
ATATTCCGGGTGTTATGACGCCCTCTCAGAGAGCATCTGCTCAGAATCTT
GGACCACTTCCGGAGTTGTCTCAGCCGACCTCCCTCCCCCTTTGTCAACT
TCGCAATTCACAGCTTCAGTTATCCCAGCTCCTGTCGTCCGCCCAGTCAA
ACGAGAATCAATCCGTTGTTTCACCCAGTTTAAAGCGTCAGGGACCAACA
CAAGCTAACAACCTAAACTCTCCGGATGGCGGCAATTCACGGAGAGAAAG
CACCAACGAGGATCCTTTGTCGGACATTGCGTTTTGTGTATAA
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protein sequence of Gvermi12040.t1

>Gvermi12040.t1 ID=Gvermi12040.t1|Name=Gvermi12040.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=381bp
MPPSPEPDRKRARTSSLAKDELNLSDIDVSRVDDCPTRPPQAERKRELER
NRRNLVNIRFVELEKELIRSGPCAVDPSERGSASSSEFVAKGKRIDKEAV
LKEAAQRIAALRKEVDSQASHIASITDEISHLRAEKIELRDDKNYLRGEL
DNARNETRRLRADNIGLWEALRKQSVVKNYLAPDLAKIPVDLFARKQQSM
ASSAAPSASNAPFSQGIQAQPPSTALPSASQPQQAMYPTSSISASRPRTI
DPETSNEPNPPMLRGDAILMHQTSEELSDLFATYIPGVMTPSQRASAQNL
GPLPELSQPTSLPLCQLRNSQLQLSQLLSSAQSNENQSVVSPSLKRQGPT
QANNLNSPDGGNSRRESTNEDPLSDIAFCV*
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mRNA from alignment at ScGOVlb_3404:3086552..3087694+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12040.t1 ID=Gvermi12040.t1|Name=Gvermi12040.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1143bp|location=Sequence derived from alignment at ScGOVlb_3404:3086552..3087694+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCGCCGTCGCCCGAGCCGGACCGCAAACGCGCTCGCACATCCTCCTT
GGCAAAGGACGAGCTCAATCTCTCAGACATCGACGTATCACGCGTCGACG
ACTGTCCAACACGTCCGCCGCAGGCGGAGCGCAAGCGAGAGTTGGAACGA
AACCGCCGCAATCTGGTTAACATTCGCTTCGTGGAGCTCGAAAAGGAGCT
CATCCGCTCGGGTCCCTGCGCCGTAGACCCTTCGGAACGCGGATCTGCGT
CCTCGTCCGAGTTTGTTGCCAAGGGTAAACGCATAGATAAGGAGGCTGTT
CTGAAGGAGGCCGCCCAGCGTATTGCAGCCTTGCGGAAAGAAGTCGACTC
ACAGGCCTCACATATCGCCAGCATAACCGACGAGATTTCTCATTTGCGCG
CCGAAAAGATAGAACTTCGCGATGATAAAAACTATTTGCGTGGCGAGTTG
GACAACGCACGCAACGAAACAAGGCGTTTGCGAGCTGACAATATCGGCTT
GTGGGAAGCGCTCAGAAAGCAGTCCGTTGTCAAGAACTACCTCGCTCCGG
ACCTCGCCAAGATTCCAGTTGACTTGTTTGCTCGCAAACAGCAAAGTATG
GCATCGTCTGCCGCACCGTCCGCAAGTAATGCACCTTTTTCGCAAGGCAT
ACAAGCACAGCCACCTTCCACGGCACTCCCATCAGCTTCACAACCTCAGC
AGGCCATGTATCCCACTTCGAGTATCAGTGCATCTCGCCCGCGAACCATA
GATCCGGAAACTTCAAATGAACCTAATCCACCTATGCTGCGCGGTGATGC
AATTCTTATGCATCAGACTTCGGAAGAGCTTAGTGATCTTTTCGCTACCT
ATATTCCGGGTGTTATGACGCCCTCTCAGAGAGCATCTGCTCAGAATCTT
GGACCACTTCCGGAGTTGTCTCAGCCGACCTCCCTCCCCCTTTGTCAACT
TCGCAATTCACAGCTTCAGTTATCCCAGCTCCTGTCGTCCGCCCAGTCAA
ACGAGAATCAATCCGTTGTTTCACCCAGTTTAAAGCGTCAGGGACCAACA
CAAGCTAACAACCTAAACTCTCCGGATGGCGGCAATTCACGGAGAGAAAG
CACCAACGAGGATCCTTTGTCGGACATTGCGTTTTGTGTATAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:3086552..3087694+

>Gvermi12040.t1 ID=Gvermi12040.t1|Name=Gvermi12040.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1143bp|location=Sequence derived from alignment at ScGOVlb_3404:3086552..3087694+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCGCCGTCGCCCGAGCCGGACCGCAAACGCGCTCGCACATCCTCCTT
GGCAAAGGACGAGCTCAATCTCTCAGACATCGACGTATCACGCGTCGACG
ACTGTCCAACACGTCCGCCGCAGGCGGAGCGCAAGCGAGAGTTGGAACGA
AACCGCCGCAATCTGGTTAACATTCGCTTCGTGGAGCTCGAAAAGGAGCT
CATCCGCTCGGGTCCCTGCGCCGTAGACCCTTCGGAACGCGGATCTGCGT
CCTCGTCCGAGTTTGTTGCCAAGGGTAAACGCATAGATAAGGAGGCTGTT
CTGAAGGAGGCCGCCCAGCGTATTGCAGCCTTGCGGAAAGAAGTCGACTC
ACAGGCCTCACATATCGCCAGCATAACCGACGAGATTTCTCATTTGCGCG
CCGAAAAGATAGAACTTCGCGATGATAAAAACTATTTGCGTGGCGAGTTG
GACAACGCACGCAACGAAACAAGGCGTTTGCGAGCTGACAATATCGGCTT
GTGGGAAGCGCTCAGAAAGCAGTCCGTTGTCAAGAACTACCTCGCTCCGG
ACCTCGCCAAGATTCCAGTTGACTTGTTTGCTCGCAAACAGCAAAGTATG
GCATCGTCTGCCGCACCGTCCGCAAGTAATGCACCTTTTTCGCAAGGCAT
ACAAGCACAGCCACCTTCCACGGCACTCCCATCAGCTTCACAACCTCAGC
AGGCCATGTATCCCACTTCGAGTATCAGTGCATCTCGCCCGCGAACCATA
GATCCGGAAACTTCAAATGAACCTAATCCACCTATGCTGCGCGGTGATGC
AATTCTTATGCATCAGACTTCGGAAGAGCTTAGTGATCTTTTCGCTACCT
ATATTCCGGGTGTTATGACGCCCTCTCAGAGAGCATCTGCTCAGAATCTT
GGACCACTTCCGGAGTTGTCTCAGCCGACCTCCCTCCCCCTTTGTCAACT
TCGCAATTCACAGCTTCAGTTATCCCAGCTCCTGTCGTCCGCCCAGTCAA
ACGAGAATCAATCCGTTGTTTCACCCAGTTTAAAGCGTCAGGGACCAACA
CAAGCTAACAACCTAAACTCTCCGGATGGCGGCAATTCACGGAGAGAAAG
CACCAACGAGGATCCTTTGTCGGACATTGCGTTTTGTGTATAA
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