Gvermi12039.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12039.t1
Unique NameGvermi12039.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length348
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3083259..3084471 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog72019.SARC_04198T0
Preferred nameAOX2
PFAMsAOX
Max annot lvl33154|Opisthokonta
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0016020,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464
Evalue3.2e-81
EggNOG OGs28JWX@1|root,2QSB5@2759|Eukaryota,38J5S@33154|Opisthokonta
Descriptionalternative oxidase activity
COG categoryQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12039Gvermi12039Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3083259..3084471 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12039.t1Gvermi12039.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3083259..3084471 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12039.t1.start1Gvermi12039.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3083259..3083261 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12039.t1.CDS1Gvermi12039.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3083259..3083561 +
Gvermi12039.t1.CDS2Gvermi12039.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3083653..3083968 +
Gvermi12039.t1.CDS3Gvermi12039.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3084047..3084471 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12039.t1.exon1Gvermi12039.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3083259..3083561 +
Gvermi12039.t1.exon2Gvermi12039.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3083653..3083968 +
Gvermi12039.t1.exon3Gvermi12039.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3084047..3084471 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12039.t1.intron1Gvermi12039.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 3083562..3083652 +
Gvermi12039.t1.intron2Gvermi12039.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 3083969..3084046 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12039.t1.stop1Gvermi12039.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3084469..3084471 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12039.t1 ID=Gvermi12039.t1|Name=Gvermi12039.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=348bp
MFHAFKHFPRTLMLVEARQSHSIPLYFDKLGQRNTLTIRGFHSHAFKPQT
GRDVSQLHGGLGNSFRPGILSHQLSTKVHAGVSDSQTGNGATQNRYDWID
REATELIEKAYQRHKALADKSKSFPPSLSVQDLEKIGTPVHYSPKDFVDR
VALNAMKFLRVFVHAFFREKYDHHAVCLETVAAVPGLVGSFHRHLRSLRR
MKRDHGWITVMQEEAENERMHLLIFMKVTNPSALERGLVVLAQGLYLSFY
SVLYLTMPRGAHRLTGYLEEEAHRAYTEYIECIDNGKLKNKPAPEIAKNY
YHLAHNATMRDVILHVRADEAMHRDVNHHFGNMYRDGDTDSPAHEVK*
back to top

spliced messenger RNA

>Gvermi12039.t1 ID=Gvermi12039.t1|Name=Gvermi12039.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1044bp|location=Sequence derived from alignment at ScGOVlb_3404:3083259..3084471+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCCACGCTTTCAAACATTTTCCTCGAACGTTGATGCTTGTGGAAGC
AAGACAAAGTCACTCTATTCCGCTTTATTTTGATAAGCTTGGTCAGCGTA
ATACCCTCACTATCCGCGGATTCCATTCCCATGCTTTCAAACCGCAAACG
GGTCGTGATGTATCTCAGCTGCATGGGGGATTGGGGAATTCTTTCCGTCC
CGGTATACTCTCACACCAACTCTCCACAAAGGTACACGCAGGTGTGAGTG
ATAGTCAAACTGGCAATGGTGCTACGCAGAATCGCTACGACTGGATAGAC
CGAGAAGCCACTGAATTGATAGAGAAGGCTTACCAACGTCACAAGGCTCT
TGCAGATAAGTCGAAATCATTTCCCCCCAGTTTATCAGTTCAAGACCTGG
AGAAAATCGGAACTCCGGTTCACTATTCACCCAAAGACTTTGTGGATCGC
GTTGCTCTCAATGCAATGAAATTCCTCCGTGTTTTTGTACACGCATTCTT
CCGAGAAAAATATGACCATCATGCAGTTTGCCTTGAAACCGTTGCTGCAG
TGCCTGGCCTTGTTGGAAGTTTTCACCGCCATCTACGCTCTCTGAGGAGG
ATGAAGCGTGATCATGGATGGATAACTGTTATGCAAGAGGAAGCTGAAAA
CGAACGAATGCATCTTTTAATTTTCATGAAGGTGACTAACCCTTCAGCTC
TTGAACGAGGATTGGTGGTGTTGGCGCAAGGGTTGTATCTCTCATTCTAC
TCGGTTTTGTACCTCACCATGCCACGTGGAGCGCATCGTCTCACGGGATA
CTTGGAGGAGGAAGCACATCGTGCCTACACAGAATATATCGAGTGCATTG
ACAACGGAAAACTCAAGAACAAGCCAGCTCCGGAGATCGCGAAGAACTAC
TATCATCTAGCCCACAACGCGACCATGCGTGATGTGATTCTCCATGTTAG
AGCTGATGAAGCGATGCATCGTGATGTGAACCATCACTTTGGAAACATGT
ACCGAGACGGTGATACAGACTCCCCCGCACATGAGGTAAAGTAG
back to top

protein sequence of Gvermi12039.t1

>Gvermi12039.t1 ID=Gvermi12039.t1|Name=Gvermi12039.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=348bp
MFHAFKHFPRTLMLVEARQSHSIPLYFDKLGQRNTLTIRGFHSHAFKPQT
GRDVSQLHGGLGNSFRPGILSHQLSTKVHAGVSDSQTGNGATQNRYDWID
REATELIEKAYQRHKALADKSKSFPPSLSVQDLEKIGTPVHYSPKDFVDR
VALNAMKFLRVFVHAFFREKYDHHAVCLETVAAVPGLVGSFHRHLRSLRR
MKRDHGWITVMQEEAENERMHLLIFMKVTNPSALERGLVVLAQGLYLSFY
SVLYLTMPRGAHRLTGYLEEEAHRAYTEYIECIDNGKLKNKPAPEIAKNY
YHLAHNATMRDVILHVRADEAMHRDVNHHFGNMYRDGDTDSPAHEVK*
back to top

mRNA from alignment at ScGOVlb_3404:3083259..3084471+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12039.t1 ID=Gvermi12039.t1|Name=Gvermi12039.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1213bp|location=Sequence derived from alignment at ScGOVlb_3404:3083259..3084471+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTCCACGCTTTCAAACATTTTCCTCGAACGTTGATGCTTGTGGAAGC
AAGACAAAGTCACTCTATTCCGCTTTATTTTGATAAGCTTGGTCAGCGTA
ATACCCTCACTATCCGCGGATTCCATTCCCATGCTTTCAAACCGCAAACG
GGTCGTGATGTATCTCAGCTGCATGGGGGATTGGGGAATTCTTTCCGTCC
CGGTATACTCTCACACCAACTCTCCACAAAGGTACACGCAGGTGTGAGTG
ATAGTCAAACTGGCAATGGTGCTACGCAGAATCGCTACGACTGGATAGAC
CGAGTAAGTATTCCGCCATCCTTCATGTCATTTTGAGTCATTTCTATTCA
GCTTCGATTTCCAGATTCTCATGCATGTATTTCCAATACCATAGGAAGCC
ACTGAATTGATAGAGAAGGCTTACCAACGTCACAAGGCTCTTGCAGATAA
GTCGAAATCATTTCCCCCCAGTTTATCAGTTCAAGACCTGGAGAAAATCG
GAACTCCGGTTCACTATTCACCCAAAGACTTTGTGGATCGCGTTGCTCTC
AATGCAATGAAATTCCTCCGTGTTTTTGTACACGCATTCTTCCGAGAAAA
ATATGACCATCATGCAGTTTGCCTTGAAACCGTTGCTGCAGTGCCTGGCC
TTGTTGGAAGTTTTCACCGCCATCTACGCTCTCTGAGGAGGATGAAGCGT
GATCATGGATGTAAGGAAGAAATTTTTCTTTCCAGAGTTCGAAACGAGAT
ATTCTAACCTATTTTGTATGGCTTGTCTTGCCAACCAGGGATAACTGTTA
TGCAAGAGGAAGCTGAAAACGAACGAATGCATCTTTTAATTTTCATGAAG
GTGACTAACCCTTCAGCTCTTGAACGAGGATTGGTGGTGTTGGCGCAAGG
GTTGTATCTCTCATTCTACTCGGTTTTGTACCTCACCATGCCACGTGGAG
CGCATCGTCTCACGGGATACTTGGAGGAGGAAGCACATCGTGCCTACACA
GAATATATCGAGTGCATTGACAACGGAAAACTCAAGAACAAGCCAGCTCC
GGAGATCGCGAAGAACTACTATCATCTAGCCCACAACGCGACCATGCGTG
ATGTGATTCTCCATGTTAGAGCTGATGAAGCGATGCATCGTGATGTGAAC
CATCACTTTGGAAACATGTACCGAGACGGTGATACAGACTCCCCCGCACA
TGAGGTAAAGTAG
back to top

Coding sequence (CDS) from alignment at ScGOVlb_3404:3083259..3084471+

>Gvermi12039.t1 ID=Gvermi12039.t1|Name=Gvermi12039.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1044bp|location=Sequence derived from alignment at ScGOVlb_3404:3083259..3084471+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTCCACGCTTTCAAACATTTTCCTCGAACGTTGATGCTTGTGGAAGC
AAGACAAAGTCACTCTATTCCGCTTTATTTTGATAAGCTTGGTCAGCGTA
ATACCCTCACTATCCGCGGATTCCATTCCCATGCTTTCAAACCGCAAACG
GGTCGTGATGTATCTCAGCTGCATGGGGGATTGGGGAATTCTTTCCGTCC
CGGTATACTCTCACACCAACTCTCCACAAAGGTACACGCAGGTGTGAGTG
ATAGTCAAACTGGCAATGGTGCTACGCAGAATCGCTACGACTGGATAGAC
CGAGAAGCCACTGAATTGATAGAGAAGGCTTACCAACGTCACAAGGCTCT
TGCAGATAAGTCGAAATCATTTCCCCCCAGTTTATCAGTTCAAGACCTGG
AGAAAATCGGAACTCCGGTTCACTATTCACCCAAAGACTTTGTGGATCGC
GTTGCTCTCAATGCAATGAAATTCCTCCGTGTTTTTGTACACGCATTCTT
CCGAGAAAAATATGACCATCATGCAGTTTGCCTTGAAACCGTTGCTGCAG
TGCCTGGCCTTGTTGGAAGTTTTCACCGCCATCTACGCTCTCTGAGGAGG
ATGAAGCGTGATCATGGATGGATAACTGTTATGCAAGAGGAAGCTGAAAA
CGAACGAATGCATCTTTTAATTTTCATGAAGGTGACTAACCCTTCAGCTC
TTGAACGAGGATTGGTGGTGTTGGCGCAAGGGTTGTATCTCTCATTCTAC
TCGGTTTTGTACCTCACCATGCCACGTGGAGCGCATCGTCTCACGGGATA
CTTGGAGGAGGAAGCACATCGTGCCTACACAGAATATATCGAGTGCATTG
ACAACGGAAAACTCAAGAACAAGCCAGCTCCGGAGATCGCGAAGAACTAC
TATCATCTAGCCCACAACGCGACCATGCGTGATGTGATTCTCCATGTTAG
AGCTGATGAAGCGATGCATCGTGATGTGAACCATCACTTTGGAAACATGT
ACCGAGACGGTGATACAGACTCCCCCGCACATGAGGTAAAGTAG
back to top